G1519751


Basic Information

Item Value
gene id G1519751
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14911596 ~ 14921517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1739856
CAATACAGGagaagagtcatatcaatagaggagaaggagtcatatcaatacaggacaaagagtcatatcaatacaagagaaagagtcatatcaatacaggagaaagagtcatatcaatacaagaGAGGGAGTCacatcaatacaggagaaagagtcatatcaatacagtaaAAGATTCATATCaataaaggagagagagtcatatcaatacaggagaaggGTCATATCaatagaggagaaggagtcatatcaatacaggacaaagagtcatatcaatacaggagtaagagtcatatcaatacaggagtaagagtcatatcaatacaggagagtcACAATAAAGttaaagagtcatatcaatacaggagaaagattcatatcaatacaggaggaagattcatatcaatataggagaaagagtcatatcaatacaggaggaagattcatatcaatacaggaggaagattcatatcaatacaggaggaagattcatatcaatacaggagaaagagtcatatcaatacaggaggaagattcatatcaatacaggagaaagattcatatcaatacaggagaaagagtcatatcaatacaggaggaagattcatatcaatacaggaggaagattcatatcaatacaggagagtcATATCAATAAAGTAAAatagtcatatcaatacaggagaaagagtcatatcaatacaagaGAAGAGTCAtgtcaatacaggagaaagagtcatatcaatacaggagaaagagtcatatcaatacaggagaaagagtcatatcagtACAGGagaagagtcatatcaatacaggagaaagagtcatatcagtACAGGagaagagtcatatcaatagagGAGAAAgtgtcatatcaatacaggagaaagattaATATCAATACAGTAAaagattcatatcaatacaggagagtcATATCAATAAAGTAAAatagtcatatcaatacaggagtaagagtcaTATCAATACaggagagtcatatcaatacaggagagtcACAATAAAgtaaaagagtcatatcaatacaggagaaagagtcatatcaatacaggagaagaGTCAtgtcaatacaggagaaagagtcatatcaatacaggagaaagagtcatatcaatactggagaaagagtcatatcagtACAGGagaagagtcatatcaatagagGAGAAAgtgtcatatcaatacaggagaaagattaATATCAATACAGTAAaagattcatatcaatacaggagagtcATATCAATAAAGTAAAatagtcatatcaatacaggagtaagagtcatatcaatacaggagagtcatatcaatacaagaGAGTCACAATAAAGttaaagagtcatatcaatacaggagaaagattcatatcaatacaggagagtcatatcaatacaggataaatattcatatcaatacaggagaaagagtcatatcaatacaggaggaagattcatatcaatacaggaggaagattcatatcaatacaggagaaagagtcatatcaatacaggaggaagattcatatcaatacaggagagtcATGTCAATAAAgtaaaagagtcatatcaatacaggagaaagagtcatatcaatataggagaaagagtcatatcaatacaggagaaagagtcatatcaatacaggagtgGGAGTCATACctatacaggagaaagagtcatatcaatacaggagaaggagtcatatcaatacaggataAtcATATCAATAAAGTAAAATAGtaatatcaatacaggagaaagagtccatatcaatacaggagagtcatatcaataaagtaaaagagtcatatcaatacaggagaaagagtcatatcaatataggagaaagagtcatatcaatacaggagaaatagtcatatcaatacaggagaaagagtcatatcaatacaggagaaagagtcatatcagtACAGGAGAAGAGCCATATCAATAGAGGAGAAAGTGTCATATCAATataggagaaagagtcatatcaatacaggagaaataGTCAAATCAATACAGGAGTGGGAGTCATACctatacaggagaaagagtcatatcaatacaggagaaggagtcatatcaatacaggataATCATATCAATAAAGTAAAATGGtaatatcaatacaggagaaagagtcatattaatacaggagaaagagtcatatcaatacaggagagagagtcatatcaatacaggagagagagtcatatcaatacaggagaaagtgtcatatcaatacaggaggaagattcatatcaatacaggataATCATATCAATAAAgtaaaagagtcatatcaatacaggagaaagagtcatatcaatacaggagaacgAGTCATATCAATATAAGAgagagagtcatatcaatacaggagagggagtcatatcaatacaggagaaagattcatatcaatacaggagagtcatatcaatacaggagaagattcatatcaatacaggagaaagagtcatatcaatacaggaggaagattcatatcaatacaggaggagGATTCATATCAATataggagaaagagtcatatcaatacaggaggaagatttatatcaatacaggaggaagATTCATATCAACACaggagagtcatatcaatacaggagaaagatttatatcaatacaggagaaagagtcatatcaatacaggaggaagattcatatcaatacaggagagtcatatcaataaagtaatagagtcatatcaatacaggagaaagagtcatatcaatacaggagaaagagtcatgtcaatacaggagaaagagtcatatcaatacaggggaaagagtcatatcaatacaggagaaagagtcatatcaatacaggagaaagagtcatatcaatacaggagaaagagtaatgtcaatacaggagaaagagtcatatcaatacaggggaaagagtcatatcaatacaggagaaagagtcatatcaatacaggagaaagagtcatatcaatacaggagaaagagtcatatcaatacaggagaaagagtcatatcagtACAGGagaagagtcatatcaatacaggagaaagagtcatatcagtACAGGagaagagtcatatcaatagagGAGAAAgtgtcatatcaatacaggagaaagattaATATCAATACAGTAAAAGA
>TU1739855
gagtcatatcaatacaggagaaagattcatatcaatacaggagagtcatatcaatacaggataaatattcatatcaatacaggagaaagagtcatatcaatacaggaggaagattcatatcaatACAGGAGAGTCATGTCAATAAAgtaaaagagtcatatcaatacaggagaaagagtcatatcaatataagagagagagtcatatcaatacaggagagggagtcatatcaatacaggagaaatattcatatcaatacagtaaaagagtcatatcaatacagcaGGAAGTTTCTTATCAATACaggagagtcatatcaatacaggagagtcACAATAAAgtaaaagagtcatatcaatacaggagaaagagtcatatcaatacaggagaaagagtcatatcaatacaggaggaagattcatatcaatacaggagagtcatatcaataaagtaaaagagtcatatcaatacaggagaaagagtcatatcaatacaggagaaagagtcatgtcaatacaggacaaagagtcatatcaatacaggagaaagagtcatatcaatacaggagaaagagtcatatcaatacaggagaaagagtcatatcaatacaggagaaagagtcatatcagtACAGGagaagagtcatatcaatacaggagaaagagtcatatcagtACAGGAGAAagggtcatatcaatacaggagaaagagtcatatcaatacaggagaaagagtcatattaatacaggagaaagagtcatatcaatacagtagaagaagtcatatcaatacaggagaaagagtcatatcagtACAGGagaagagtcatatcaatacaggagaaagagtcatatcagtACAGGagaagagtcatatcaatagagGAGAAAgtgtcatatcaatacaggagaaagattaATATCAATACAGTAAAAGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106602093

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1739856 False 3179 lncRNA 0.34 3 14911596 14921517
TU1739855 True 937 lncRNA 0.34 3 14912631 14921517

Neighbor

gene id symbol gene type direction distance location
il8r il8r coding upstream 10242 14898154 ~ 14901354 (+)
LOC118936566 il8r coding upstream 30729 14877692 ~ 14880867 (+)
LOC118941101 il8r coding upstream 49752 14858722 ~ 14861844 (+)
LOC110495453 il8r coding upstream 68711 14835394 ~ 14842885 (+)
zgc:92380 LOC106575639 coding upstream 112285 14792937 ~ 14799311 (+)
LOC110495435 LOC100194500 coding downstream 254884 15176401 ~ 15186345 (+)
LOC110495440 LOC106575601 coding downstream 285838 15207355 ~ 15251952 (+)
LOC110495444 LOC106575602 coding downstream 334732 15256249 ~ 15266522 (+)
LOC110496998 LOC106592612 coding downstream 355056 15276573 ~ 15332387 (+)
LOC110495449 LOC106574744 coding downstream 411868 15333385 ~ 15344802 (+)
G1519759 NA non-coding upstream 1902 14909491 ~ 14909694 (+)
G1519750 NA non-coding upstream 14451 14893452 ~ 14897145 (+)
G1519738 NA non-coding upstream 79238 14832159 ~ 14832358 (+)
G1519654 NA non-coding upstream 235891 14672239 ~ 14675705 (+)
LOC110495481 LOC106574739 non-coding upstream 354473 14556326 ~ 14558589 (+)
G1519766 NA non-coding downstream 9310 14930827 ~ 14931038 (+)
G1519770 NA non-coding downstream 20378 14941895 ~ 14942120 (+)
G1519772 NA non-coding downstream 23001 14944518 ~ 14945290 (+)
G1519773 NA non-coding downstream 25522 14947039 ~ 14947515 (+)
G1519776 NA non-coding downstream 36562 14958079 ~ 14958503 (+)
G1519733 NA other upstream 96710 14813982 ~ 14814886 (+)
G1519538 NA other upstream 412459 14498786 ~ 14499137 (+)
G1519096 NA other upstream 475476 14434762 ~ 14436120 (+)
G1520649 NA other downstream 834976 15756493 ~ 15816005 (+)
LOC110495644 LOC106575583 other downstream 874835 15796262 ~ 15801788 (+)
G1520742 NA other downstream 997640 15919157 ~ 15922899 (+)
G1520748 NA other downstream 1016713 15938230 ~ 15938818 (+)

Expression


Co-expression Network