G1519873 (LOC106575565)


Basic Information

Item Value
gene id G1519873
gene name LOC106575565
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15186831 ~ 15191130 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1740027
AAGTTACCATCCATTTAATCATGTACTTCATCTTATAACAAGACGTTCTTTATCACAAAACAATTCTACATTTCTATTTGTGTTCCTATTAACGAGGAAATCTAAAACGTGTATTTGTGTTTGTAACAACAAGACTTGGTCTATGTGGTTTTCCTACAGTGTATAGAAGACGTATGTGTATTCTAAAGGCTATAGAAGGTAGGTTTCATAGTTTAGGTAGCCTACCAACCTGAAGGCGTAGAACACTGTAATACAAACAAACGGTAGGTGGAGTTGAGTACACAACCACCAAACATTTGACATGTTCACTTCCCAGCACCAGAAAGTAAGACACTTGGGCTGCGTTTACACACGCAGAAAATCTGATCTGACTGGTCAAAAGACGAATCGgtggcaaaatatcagaattgggctaccAGTGTAAACACAGCCATACAAACACTAAGTAAGTAAGACACTAATCCCTTAAAGAGTCAATTCGCCGTTTTGTTTTTTGCTTCACATATTCACCTTTCAAATAAGTCAAATCCTTTTTTCATGACAACATTTCTCTAGATACCCTACAACAGATACATTGAATACAAGAGGTCCATAGCGGTAAATACTAATTGCCAAATGTGCATATAATTGGAATTTATGTGCAAATcgcccattgacatcaatgcttGATTTTTACACAAAAGTCTGAGCTGGACACAGATTTCTAGTTAGAATTCATCCCATAGTAAACATTCTTCTCATTAGATTTTGTTCACCACAGAAAAGCTACGAGAGGAGGGAAAGAAATTGCAAAGAAGAATGGGTTTCATCTTTGTTGCCTGTCACATCCTATGCCCTTGCAGTGGAATTTGTTCTCAAGCCAAGACACATTATGGTGGTTACATTGTACGATATCGCTGAGAATTGATTTAATACAAAACAAAACTatacacagaaacagaaacagacgcACAAACATTGTGATAGCTTACTTAAGTGTTTAGAGTACTGCTTCCTCTGTTGTGTTTTAAGACTCAGGCCGATCAGGGAGAACCAGGGCCGTACTATTTCTGGGCTGAGGCGAGGGTGTCCATCTCTGGCCCTCTAAGGTACTGGCTGCAGTTTGGGTCTCCCCTCACGGTCGGTGCTGATGGGATGGGCCGACCGGTGTGTGGGTTGACGCACCAGCACTCCCCCCTCTGGCCGTGCAGAGACATCTTACACTGTTTGAGGTTATACTGCCCCCTCATATCACAGTTGGGGATGTGCAGGGCATACAGGTCTTCCAGTGGGCCTCGGTTGTCTCTGAAGGGCATCTTAGATATCCTCTCCAGCACCTGGTCCAGCTCCTGCTGACACTGAATCTGCTTGCCGCGGGGAGTTTTGGGGTCCTCTGGCTTGTTACTCTTCATCTTGGTCTTCATCTCCTGTCGGTGCTGGCGCATAGCGTTCTCCTTGGGCCCCAGCCATGGGTTGTCCTTAGTGGCCTTCCTCACCGGGGGGATCTCTGTCAGGCTCGTGTCCAGGATGTCCACCACCTCCCCTGAGGGACagacacgcacgcagacacaggATACatgcacatacgcacac

Function

NR:

description
PREDICTED: insulin-like growth factor-binding protein 2-A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1740027 True 1572 lncRNA 0.45 3 15186831 15191130

Neighbor

gene id symbol gene type direction distance location
LOC110495435 LOC100194500 coding upstream 486 15176401 ~ 15186345 (+)
LOC110495438 tns1 coding upstream 53497 14907954 ~ 15133334 (+)
il8r il8r coding upstream 285477 14898154 ~ 14901354 (+)
LOC118936566 il8r coding upstream 305964 14877692 ~ 14880867 (+)
LOC118941101 il8r coding upstream 324987 14858722 ~ 14861844 (+)
LOC110495440 LOC106575601 coding downstream 16225 15207355 ~ 15251952 (+)
LOC110495444 LOC106575602 coding downstream 65119 15256249 ~ 15266522 (+)
LOC110496998 LOC106592612 coding downstream 85443 15276573 ~ 15332387 (+)
LOC110495449 LOC106574744 coding downstream 142255 15333385 ~ 15344802 (+)
LOC110495439 LOC106574706 coding downstream 227931 15419061 ~ 15490199 (+)
G1519892 NA non-coding upstream 11979 15174631 ~ 15174852 (+)
G1519889 NA non-coding upstream 14643 15171956 ~ 15172188 (+)
G1519888 NA non-coding upstream 15245 15171362 ~ 15171586 (+)
G1519878 NA non-coding upstream 32284 15154310 ~ 15154547 (+)
G1519863 NA non-coding upstream 38650 15147790 ~ 15148181 (+)
G1519904 NA non-coding downstream 32834 15223964 ~ 15224303 (+)
G1519915 NA non-coding downstream 57905 15249035 ~ 15249599 (+)
G1519916 NA non-coding downstream 58527 15249657 ~ 15249945 (+)
G1519917 NA non-coding downstream 58955 15250085 ~ 15250659 (+)
G1519733 NA other upstream 371945 14813982 ~ 14814886 (+)
LOC110495481 LOC106574739 other upstream 629485 14556326 ~ 14558589 (+)
G1519538 NA other upstream 687694 14498786 ~ 14499137 (+)
G1519096 NA other upstream 750711 14434762 ~ 14436120 (+)
G1520649 NA other downstream 565363 15756493 ~ 15816005 (+)
LOC110495644 LOC106575583 other downstream 605222 15796262 ~ 15801788 (+)
G1520742 NA other downstream 728027 15919157 ~ 15922899 (+)
G1520748 NA other downstream 747100 15938230 ~ 15938818 (+)

Expression


Co-expression Network