G1519940


Basic Information

Item Value
gene id G1519940
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15347408 ~ 15348810 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1740098
AATTAATTAAGACCAAATTATTCACCGCAGTCATGAAGTTTAACGGTTTGATGGATtaactgattgattgactgatgtaTCACTAACCCTCTGTGCGTATCTTGATGGTGCTAGTGGGTCGTATCTTGTGTCCATCCTTATACCACTCCCCAGTCACATCTTCCATGGACACCTCACACATGAACACAGCATTCTGGTCCTCCTGGACATACAGGTCCTCCAGCCCATGTAGCACCTCCACTTCAGGCTCTGTGGAGGGAGATTGGAAGATTGGTTCAACACGTTGGAATATAGTAACAGTGTGCAAACGTAACCGTGCCAATGGAAGAGCATTAGTCAGGCAGCCATGACCTCTAGGTGGCAGTAGCACGCAGTACAAGGTTGGCTGTGTTGGCCTGCTTCAGCCTTCCTGTCACTATAACTGAACACTAGAGGTCAACGAAGAGTACCGTTGGTGAGAGTACTGAGATGTTTTACATGCACTTGAAATGAAGACCGTTCTGCAGTGACTTGATAAGGAGAGTGTACAGTATATTACCATAGACCTCCAGGTTACAGGATGTATTGACGTCTCCAACGTCACAGGTGTAGGTGCCTGCATCAGAGAGGCTACACTGCAGCAGCTGACAGAACCTCTTCCTCCCCATGGAGTAAATACGGTACTGGGTCTTCCCTGGCTTCAGCTCTGTCCCATTCTACAGTCAAGAAGAAAGACAGGGGACCAACATTATTACCGTATTCTCAGGGTTAGACAACATTTAATGAGATCAAACTGTTTACTTCCTGTCTGTGCCTATTCTATATAACATGGTAATACACTACTGACACAAATACGGCAGGTCTATTGGTTGTACATCTATTACCTTCAGCCACCTGACCTCCACGTTCTGTCTGGACAGCTCACACTCCAATGTGGCAGGAGAGCCCTGCTCCAGTCTCATGTCTACCAGCTTCTTCATGATAGTCACTGGAGTCTCTGGGAAAGAACAACAACATGGAAGAAATGCTAAGAAATGTTCTTTACTATAACATCCAATCCAGACACAGCTTTCCAGGTTTAAAGACCCCTGTATTAGATAACTGGATATTCATGATGATGTTCGCGACCctcaaccctctccctccctctctatctcagtACCACAAACGCTGTCTCGgcctctgaatgatcggctatgaaaagccaactgacatttactcctgaggtgctgacctgttgcaccctctacattacaaccactgtgattattatttgaccctgctggtcatctatgaacgtttgaacatcttggccatgttctcttataatctccacccagcacagccagaagaggactggctacccctcagagcctggttcctctctaggtttcttcctaggttcctacctttctaaggagttt

Function

NR:

description
PREDICTED: obscurin-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1740098 True 1403 lncRNA 0.46 1 15347408 15348810

Neighbor

gene id symbol gene type direction distance location
LOC110495449 LOC106574744 coding upstream 2606 15333385 ~ 15344802 (+)
LOC110496998 LOC106592612 coding upstream 15021 15276573 ~ 15332387 (+)
LOC110495444 LOC106575602 coding upstream 80886 15256249 ~ 15266522 (+)
LOC110495440 LOC106575601 coding upstream 95456 15207355 ~ 15251952 (+)
LOC110495435 LOC100194500 coding upstream 161063 15176401 ~ 15186345 (+)
LOC110495439 LOC106574706 coding downstream 70251 15419061 ~ 15490199 (+)
LOC110495446 LOC106575524 coding downstream 154204 15503014 ~ 15536810 (+)
LOC110495448 LOC106575529 coding downstream 206049 15554859 ~ 15563239 (+)
LOC110495441 fam171b coding downstream 237098 15585908 ~ 15596051 (+)
LOC110495451 fbx36 coding downstream 258673 15603978 ~ 15615215 (+)
G1519937 NA non-coding upstream 31859 15315337 ~ 15315549 (+)
G1519932 NA non-coding upstream 53797 15293310 ~ 15293611 (+)
G1519929 NA non-coding upstream 60379 15286808 ~ 15287029 (+)
G1519925 NA non-coding upstream 77589 15269521 ~ 15269819 (+)
G1519875 NA non-coding upstream 92573 15254286 ~ 15254835 (+)
G1519942 LOC106574694 non-coding downstream 136 15348946 ~ 15349227 (+)
G1519951 LOC106575610 non-coding downstream 9600 15358410 ~ 15399001 (+)
G1519955 NA non-coding downstream 12101 15360911 ~ 15365587 (+)
G1519959 NA non-coding downstream 25972 15374782 ~ 15387181 (+)
G1519966 NA non-coding downstream 47459 15396269 ~ 15398541 (+)
il8r il8r other upstream 447236 14898154 ~ 14901354 (+)
G1519733 NA other upstream 532522 14813982 ~ 14814886 (+)
LOC110495481 LOC106574739 other upstream 790062 14556326 ~ 14558589 (+)
G1519538 NA other upstream 848271 14498786 ~ 14499137 (+)
G1520649 NA other downstream 407683 15756493 ~ 15816005 (+)
LOC110495644 LOC106575583 other downstream 447542 15796262 ~ 15801788 (+)
G1520742 NA other downstream 570347 15919157 ~ 15922899 (+)
G1520748 NA other downstream 589420 15938230 ~ 15938818 (+)
LOC110495674 LOC106575504 other downstream 1116703 16454118 ~ 16468453 (+)

Expression


Co-expression Network