G1519942 (LOC106574694)


Basic Information

Item Value
gene id G1519942
gene name LOC106574694
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15348946 ~ 15349227 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1740100
tgatgatacctcACCCTTGACAGTGAGCCTGGCAGAGGTCCGGACTCCCTCCGCAGAGAAGACGATGGTGCCCGTGTCCTCCAGGGTAAGGTTGGACAGGGTGAGGCCGTGGACCAGCCCGTTGCAGCTCACCCGCCAGTGGTTGCTGGGTTTGACCCGGATGCCGTCCTTCTGCCAGACGCCCTCCACGCCAGTGTGAGACAGCTCCACCTCGAAGGAGGCCGTCTCCCGCTCAAACGTGCTCGTCTCCACCAGACCCTTACGGATGGCGATCTTACGGGC

Function

NR:

description
obscurin-like protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1740100 True 282 lncRNA 0.63 1 15348946 15349227

Neighbor

gene id symbol gene type direction distance location
LOC110495449 LOC106574744 coding upstream 4144 15333385 ~ 15344802 (+)
LOC110496998 LOC106592612 coding upstream 16559 15276573 ~ 15332387 (+)
LOC110495444 LOC106575602 coding upstream 82424 15256249 ~ 15266522 (+)
LOC110495440 LOC106575601 coding upstream 96994 15207355 ~ 15251952 (+)
LOC110495435 LOC100194500 coding upstream 162601 15176401 ~ 15186345 (+)
LOC110495439 LOC106574706 coding downstream 69834 15419061 ~ 15490199 (+)
LOC110495446 LOC106575524 coding downstream 153787 15503014 ~ 15536810 (+)
LOC110495448 LOC106575529 coding downstream 205632 15554859 ~ 15563239 (+)
LOC110495441 fam171b coding downstream 236681 15585908 ~ 15596051 (+)
LOC110495451 fbx36 coding downstream 258256 15603978 ~ 15615215 (+)
G1519940 NA non-coding upstream 136 15347408 ~ 15348810 (+)
G1519937 NA non-coding upstream 33397 15315337 ~ 15315549 (+)
G1519932 NA non-coding upstream 55335 15293310 ~ 15293611 (+)
G1519929 NA non-coding upstream 61917 15286808 ~ 15287029 (+)
G1519925 NA non-coding upstream 79127 15269521 ~ 15269819 (+)
G1519951 LOC106575610 non-coding downstream 9183 15358410 ~ 15399001 (+)
G1519955 NA non-coding downstream 11684 15360911 ~ 15365587 (+)
G1519959 NA non-coding downstream 25555 15374782 ~ 15387181 (+)
G1519966 NA non-coding downstream 47042 15396269 ~ 15398541 (+)
G1519968 LOC106574694 non-coding downstream 54104 15403331 ~ 15404765 (+)
il8r il8r other upstream 448774 14898154 ~ 14901354 (+)
G1519733 NA other upstream 534060 14813982 ~ 14814886 (+)
LOC110495481 LOC106574739 other upstream 791600 14556326 ~ 14558589 (+)
G1519538 NA other upstream 849809 14498786 ~ 14499137 (+)
G1520649 NA other downstream 407266 15756493 ~ 15816005 (+)
LOC110495644 LOC106575583 other downstream 447125 15796262 ~ 15801788 (+)
G1520742 NA other downstream 569930 15919157 ~ 15922899 (+)
G1520748 NA other downstream 589003 15938230 ~ 15938818 (+)
LOC110495674 LOC106575504 other downstream 1116286 16454118 ~ 16468453 (+)

Expression


Co-expression Network