G1520413


Basic Information

Item Value
gene id G1520413
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15493946 ~ 15494848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1740701
GGCTCGATCGAGTGAGCTTTTCTTTATATATTATCTTGTAGTAATGTAGGTGGGCCCTGCCTGTAATTCTTTAAAAACATtgagaaaaaaatatgtattcCATAATAACATCCTTTTGGTGAACTGAATACACGTTGGATATAACAGATAAGGCACTAAGGGCTGAGAACAGTGACTGTTCACTAACATTGGTAAACTACACTCCCCCAACACATCCAACGAAGTGTCATGAGGTCTCGACTCACCTCTAAGTCTCATCTGTCCTTGTGCAGTCGTGTGGAAGCCGTAGCGAGAGATTCCGAGACCGTTTAGACCACTCAAAGTCAGTGTAGGGGGTTTAGGTGTTGATGTAAAGATGACACAATGTTCAAGGGTTAGTTAAAGATTTTGGCAAGGagaccctttatctacttccacacagtcagatgaactcatggataccatttttatgtctctacaTCCAGTATGaaagaagttagaggtagtttcgcgagccaatgcCAACTAGCGTTAGCTAGCGCAACGACAGGAAGTCTACAGGGACAACTTGCATGCTAGCTGTTCcgatagacttccagtcattacgCTAATGGCAGTTAGCAATTtggctaacgctagttagcaaattccttcaaactgcatgcagataCATAAAAATAGTCTCCAcgagttaatctgactctggggaagtagataaagggcttcactGCCAACATTCCAGAATATTCCTTTCAGGCCTTCACGTTGTTCCCATTGGACAGAGGTTCCGTCTCTGAGGGGTTTGATGGTACGGAACATAGCTCAGTGGGCGTGGCCTGGTCTGTGTCCCCTCCCCCTCCTGCCGATTGGTTCCTGTAGTGGCGAATGATGACCAAGGCAGCACAGCCCAGGTAGATAACCGTC

Function

NR:

description
folate transporter 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1740701 True 903 lncRNA 0.45 1 15493946 15494848

Neighbor

gene id symbol gene type direction distance location
LOC110495439 LOC106574706 coding upstream 3747 15419061 ~ 15490199 (+)
LOC110495449 LOC106574744 coding upstream 149144 15333385 ~ 15344802 (+)
LOC110496998 LOC106592612 coding upstream 161559 15276573 ~ 15332387 (+)
LOC110495444 LOC106575602 coding upstream 227424 15256249 ~ 15266522 (+)
LOC110495440 LOC106575601 coding upstream 241994 15207355 ~ 15251952 (+)
LOC110495446 LOC106575524 coding downstream 8166 15503014 ~ 15536810 (+)
LOC110495448 LOC106575529 coding downstream 60011 15554859 ~ 15563239 (+)
LOC110495441 fam171b coding downstream 91060 15585908 ~ 15596051 (+)
LOC110495451 fbx36 coding downstream 112635 15603978 ~ 15615215 (+)
LOC110495637 LOC106575461 coding downstream 127339 15622187 ~ 15674929 (+)
G1520421 NA non-coding upstream 65443 15428174 ~ 15428503 (+)
G1520404 NA non-coding upstream 78232 15415489 ~ 15415714 (+)
G1520402 NA non-coding upstream 80384 15413297 ~ 15413562 (+)
G1519970 NA non-coding upstream 87408 15406062 ~ 15406538 (+)
G1519968 LOC106574694 non-coding upstream 89181 15403331 ~ 15404765 (+)
G1520450 LOC106574707 non-coding downstream 1576 15496424 ~ 15497199 (+)
G1520451 NA non-coding downstream 3259 15498107 ~ 15498333 (+)
G1520456 NA non-coding downstream 7091 15501939 ~ 15502231 (+)
G1520473 NA non-coding downstream 42068 15536916 ~ 15537903 (+)
G1520474 NA non-coding downstream 44817 15539665 ~ 15541328 (+)
il8r il8r other upstream 593774 14898154 ~ 14901354 (+)
G1519733 NA other upstream 679060 14813982 ~ 14814886 (+)
LOC110495481 LOC106574739 other upstream 936600 14556326 ~ 14558589 (+)
G1519538 NA other upstream 994809 14498786 ~ 14499137 (+)
G1520649 NA other downstream 261645 15756493 ~ 15816005 (+)
LOC110495644 LOC106575583 other downstream 301504 15796262 ~ 15801788 (+)
G1520742 NA other downstream 424309 15919157 ~ 15922899 (+)
G1520748 NA other downstream 443382 15938230 ~ 15938818 (+)
LOC110495674 LOC106575504 other downstream 970665 16454118 ~ 16468453 (+)

Expression


Co-expression Network