G1520474


Basic Information

Item Value
gene id G1520474
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15539665 ~ 15541328 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1740765
CCTGAATGTCTCACcttgaatgtctcatcttgaATGTCTCATTGAATGTCTCATCCTGATGGTATCATCTTGAATGTCTCAACTTGAATAATCTCATCTTGTATGTCTAGGAAATACCACTAGAGGGCCTAGCTATGCAGGAGAAGAAGATAGTATCCatcaaattcattttttttttgcttttgttTTTAAAAATCTTTGATTTAGAAAGGGGGGCGcaccattgagaccagggtctcattctCAAGGGAGCCCTGtgaacatcaacacaatacaatagaacataaagcaaaataacaacatcaacacaatacattatacagaaaaataacaacatcaatacaatacaatacaacatacagaaaaataacaacatcaatacaatagaacataaagcaaaataacaacatcaatacaatacaatacaacatacagaaaaataacaacatcaatacaatacaatacaacatacagaaaaataacaacatcaatacaatacaacatacagaaaaataacaacatcaatacaatacaatacaacatacagaaaaataacaacatcaacacaatatgatacaacatacagaaaaataacaacatcaacacaatatgatacaacatatagcaaaatatcaacatcaacacaatatgatacaacatatagcaaaatatcaacatcaacacaatatgatacaacatacagaaaaataacaacatcaatacaatatgatacaacatatagcaaaatatcaacatcaacacaatatgatacaacatatagcaaaatatcaacatcaacacaatatgatacaacatacagaaaaataacaacatcaatacaatacaatacaacatatagCAAAatatcaacatcaacacaatatgatacaacatatagcaaaatatcaacatcaacacaatacaacatacaacaaaacaaacacaaccatCACTAGCTGCTGTATGGGATTGAACAGGAGATACgaacatacagtatgtcagtggtgcaaaaagtacccaattgtcatcgttgagtaaaagtaaagataccttaatagaaaatgactcaaataaaagtgaaaatcacccagttaaatactatttgagtaaaagtctaaaagtatttggtttaaaaaatacttaagtatcaaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC106593042

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1740765 True 1152 lncRNA 0.29 3 15539665 15541328

Neighbor

gene id symbol gene type direction distance location
LOC110495446 LOC106575524 coding upstream 2855 15503014 ~ 15536810 (+)
LOC110495439 LOC106574706 coding upstream 49466 15419061 ~ 15490199 (+)
LOC110495449 LOC106574744 coding upstream 194863 15333385 ~ 15344802 (+)
LOC110496998 LOC106592612 coding upstream 207278 15276573 ~ 15332387 (+)
LOC110495444 LOC106575602 coding upstream 273143 15256249 ~ 15266522 (+)
LOC110495448 LOC106575529 coding downstream 13531 15554859 ~ 15563239 (+)
LOC110495441 fam171b coding downstream 44580 15585908 ~ 15596051 (+)
LOC110495451 fbx36 coding downstream 66155 15603978 ~ 15615215 (+)
LOC110495637 LOC106575461 coding downstream 80859 15622187 ~ 15674929 (+)
LOC110495639 LOC106575596 coding downstream 180005 15721333 ~ 15723189 (+)
G1520473 NA non-coding upstream 1762 15536916 ~ 15537903 (+)
G1520456 NA non-coding upstream 37434 15501939 ~ 15502231 (+)
G1520451 NA non-coding upstream 41332 15498107 ~ 15498333 (+)
G1520450 LOC106574707 non-coding upstream 42466 15496424 ~ 15497199 (+)
G1520413 NA non-coding upstream 44817 15493946 ~ 15494848 (+)
G1520529 NA non-coding downstream 133 15541461 ~ 15541662 (+)
G1520533 NA non-coding downstream 2618 15543946 ~ 15544242 (+)
G1520546 NA non-coding downstream 3488 15544816 ~ 15545020 (+)
G1520548 NA non-coding downstream 6619 15547947 ~ 15548389 (+)
LOC110495440 LOC106575601 other upstream 323421 15207355 ~ 15251952 (+)
il8r il8r other upstream 639493 14898154 ~ 14901354 (+)
G1519733 NA other upstream 724779 14813982 ~ 14814886 (+)
LOC110495481 LOC106574739 other upstream 982319 14556326 ~ 14558589 (+)
G1519538 NA other upstream 1040528 14498786 ~ 14499137 (+)
G1520649 NA other downstream 215165 15756493 ~ 15816005 (+)
LOC110495644 LOC106575583 other downstream 255024 15796262 ~ 15801788 (+)
G1520742 NA other downstream 377829 15919157 ~ 15922899 (+)
G1520748 NA other downstream 396902 15938230 ~ 15938818 (+)
LOC110495674 LOC106575504 other downstream 924185 16454118 ~ 16468453 (+)

Expression


Co-expression Network