G1520691


Basic Information

Item Value
gene id G1520691
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15869734 ~ 15870666 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1741007
TCATGTGACAAATTAATTTAATCCAATAAAATGTCACCAGTACAGAGATATAACGTCATTAATATAAAACAATTATGTTGAAATAGAAGCTCTTAAAACAGGAATAAAAAAAATGGTTCAAAACAAAAACATCTTAGGGCAGGGTCTAAAATCATCAGCAAGTCTTTAGCCAAATCCAACTCATTATGGCAAATCCAGGAATTGTACATGTACAAAAACTTCATTTCCCATATGTCATTGGGTTGTAAGTCCAGGGGACAGGGAGTTAGTAAAACTTCAATTGCCAGAATACCAGGAGTTTTTGACAGGCTATTCAGACAGATATTGACAGTAAGTATACAGCAGTGTAGGAATGGTACGGTCCACTAAAGGCAtctaggctgtgtcccaaatggcaccctatttccaatatagtgctctactttattgggctccggtcaaaagcatttcactataaagagaaaagggtgcaatttgggacgtagCCTAGCAGTGCTCTCTGGGCATTCTGATAGAGGCAGGGTGAGTTCCTCTCAGGACTTCCATGTGTAGGAGTAGTTGTTCAAATGGAGCTGTCTGAGGGGAGACTTCCCCAAGGTAGAGGGCTCCTGGAGCTGCTGGATGGTGCTGGAATGAAGACCACATCCATCCAGCTCTACAGCTTGCTcagcct
>TU1741009
TCATGTGACAAATTAATTTAATCCAATAAAATGTCACCAGTACAGAGATATAACGTCATTAATATAAAACAATTATGTTGAAATAGAAGCTCTTAAAACAGGAATAAAAAAAATGGTTCAAAACAAAAACATCTTAGGGCAGGGTCTAAAATCATCAGCAAGTCTTTAGCCAAATCCAACTCATTATGGCAAATCCAGGAATTGTACATGTACAAAAACTTCATTTCCCATATGTCATTGGGTTGTAAGTCCAGGGGACAGGGAGTTAGTAAAACTTCAATTGCCAGAATACCAGGAGTTTTTGACAGGCTATTCAGACAGATATTGACAGTAAGTATACAGCAGTGTAGGAATGGTACGGTCCACTAAAGGCAtctaggctgtgtcccaaatggcaccctatttccaatatagtgctctactttattgggctccggtcaaaagcatttcactataaagagaaaagggtgcaatttgggacgtagCCTAGCAGTGCTCTCTGGGCATTCTGATAGAGGCAGGGTGAGTTCCTCTCAGGACTTCCATGTGTAGGAGTAGTTGTTCAAATGGAGCTGTCTGAGGGGAGACTTCCCCAAGGTAGAGGGCTCCTGGAGCTGCTGGATGGTGCTGGAATGAAGACCACATCCATCCAGCTCTACAGCTTGCTcagcctgggagagggagagaggcagggaggaagagaaggatatAAACAAACAAgtacaaattattttttattgtgattTAACTTTGAATTGTGGAGATCAACTGATGAGGCTTTATACCAGTCCGTTACAGTGTTGTCATGTGTGTTTGGTACGgtggtgggtttgtgtgtgtgtgactgacctgttccctggtggtggtgtgtgttgaGGACAgcggtgggtttgtgtgtgtgtgactgacctgttccctggtggtggtgtgtgt
>TU1741006
AGATATAACGTCATTAATATAAAACAATTATGTTGAAATAGAAGCTCTTAAAACAGGAATAAAAAAAATGGTTCAAAACAAAAACATCTTAGGGCAGGGTCTAAAATCATCAGCAAGTCTTTAGCCAAATCCAACTCATTATGGCAAATCCAGGAATTGTACATGTACAAAAACTTCATTTCCCATATGTCATTGGGTTGTAAGTCCAGGGGACAGGGAGTTAGTAAAACTTCAATTGCCAGAATACCAGGAGTTTTTGACAGGCTATTCAGACAGATATTGACAGTAAGTATACAGCAGTGTAGGAATGGTACGGTCCACTAAAGGCAtctaggctgtgtcccaaatggcaccctatttccaatatagtgctctactttattgggctccggtcaaaagcatttcactataaagagaaaagggtgcaatttgggacgtagCCTAGCAGTGCTCTCTGGGCATTCTGATAGAGGCAGGGTGAGTTCCTCTCAGGACTTCCATGTGTAGGAGTAGTTGTTCAAATGGAGCTGTCTGAGGGGAGACTTCCCCAAGGTAGAGGGCTCCTGGAGCTGCTGGATGGTGCTGGAATGAAGACCACATCCATCCAGCTCTACAGCTTGCTcagcct
>TU1741008
AGATATAACGTCATTAATATAAAACAATTATGTTGAAATAGAAGCTCTTAAAACAGGAATAAAAAAAATGGTTCAAAACAAAAACATCTTAGGGCAGGGTCTAAAATCATCAGCAAGTCTTTAGCCAAATCCAACTCATTATGGCAAATCCAGGAATTGTACATGTACAAAAACTTCATTTCCCATATGTCATTGGGTTGTAAGTCCAGGGGACAGGGAGTTAGTAAAACTTCAATTGCCAGAATACCAGGAGTTTTTGACAGGCTATTCAGACAGATATTGACAGTAAGTATACAGCAGTGTAGGAATGGTACGGTCCACTAAAGGCAtctaggctgtgtcccaaatggcaccctatttccaatatagtgctctactttattgggctccggtcaaaagcatttcactataaagagaaaagggtgcaatttgggacgtagCCTAGCAGTGCTCTCTGGGCATTCTGATAGAGGCAGGGTGAGTTCCTCTCAGGACTTCCATGTGTAGGAGTAGTTGTTCAAATGGAGCTGTCTGAGGGGAGACTTCCCCAAGGTAGAGGGCTCCTGGAGCTGCTGGATGGTGCTGGAATGAAGACCACATCCATCCAGCTCTACAGCTTGCTcagcctgggagagggagagaggcagggaggaagagaaggatatAAACAAACAAgtacaaattattttttattgtgattTAACTTTGAATTGTGGAGATCAACTGATGAGGCTTTATACCAGTCCGTTACAGTGTTGTCATGTGTGTTTGGTACGgtggtgggtttgtgtgtgtgtgactgacctgttccctggtggtggtgtgtgttgaGGACAgcggtgggtttgtgtgtgtgtgactgacctgttccctggtggtggtgtgtgt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1741007 False 673 lncRNA 0.42 1 15869734 15870406
TU1741009 False 933 lncRNA 0.43 1 15869734 15870666
TU1741006 False 628 lncRNA 0.43 1 15869779 15870406
TU1741008 True 888 lncRNA 0.44 1 15869779 15870666

Neighbor

gene id symbol gene type direction distance location
LOC110495649 LOC106574731 coding upstream 4695 15852644 ~ 15865039 (+)
LOC110495650 LOC106575578 coding upstream 17477 15847368 ~ 15852257 (+)
LOC110495648 LOC106575580 coding upstream 28089 15825848 ~ 15841645 (+)
LOC110495647 NA coding upstream 49273 15817497 ~ 15820461 (+)
LOC110495646 LOC106575584 coding upstream 61248 15804179 ~ 15808486 (+)
LOC110495654 LOC106575575 coding downstream 122947 15993613 ~ 15996859 (+)
LOC110495655 LOC106574721 coding downstream 139109 16009775 ~ 16021896 (+)
LOC110495658 LOC100136184 coding downstream 176479 16047145 ~ 16060945 (+)
LOC110495657 LOC100380633 coding downstream 205326 16075992 ~ 16089889 (+)
LOC110495667 LOC106575562 coding downstream 401570 16272236 ~ 16277918 (+)
G1520677 NA non-coding upstream 44594 15824727 ~ 15825140 (+)
LOC110495637 LOC106575461 non-coding upstream 195072 15622187 ~ 15674929 (+)
G1520560 NA non-coding upstream 237649 15577484 ~ 15632085 (+)
LOC110495451 fbx36 non-coding upstream 255058 15603978 ~ 15615215 (+)
G1520565 NA non-coding upstream 262916 15590725 ~ 15606818 (+)
G1520697 NA non-coding downstream 5485 15876151 ~ 15878418 (+)
G1520704 LOC106595378 non-coding downstream 15676 15886342 ~ 15893668 (+)
G1520705 NA non-coding downstream 16519 15887185 ~ 15887551 (+)
G1520737 NA non-coding downstream 31575 15902241 ~ 15906967 (+)
G1520738 NA non-coding downstream 42774 15913440 ~ 15916546 (+)
G1520649 NA other upstream 53729 15756493 ~ 15816005 (+)
LOC110495644 LOC106575583 other upstream 69853 15796262 ~ 15801788 (+)
LOC110495440 LOC106575601 other upstream 653490 15207355 ~ 15251952 (+)
il8r il8r other upstream 969562 14898154 ~ 14901354 (+)
G1519733 NA other upstream 1054848 14813982 ~ 14814886 (+)
G1520742 NA other downstream 48491 15919157 ~ 15922899 (+)
G1520748 NA other downstream 67564 15938230 ~ 15938818 (+)
LOC110495674 LOC106575504 other downstream 594847 16454118 ~ 16468453 (+)
LOC110527374 LOC106592210 other downstream 1753150 17623786 ~ 17631132 (+)
G1522415 LOC106575491 other downstream 1895553 17766219 ~ 17766694 (+)

Expression


Co-expression Network