G1520697


Basic Information

Item Value
gene id G1520697
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15876151 ~ 15878418 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1741017
CTGGTTTTATTTTCTTTACAACAATATTTATATTCATAAAGTACAACTAAATGTGAGAAAAGGTGTATTGGATGTTGCTGTGACATACCTTTGTGGGAGGCAATGATGTCATCAAACATGGACAATGTCGTCATTTACATTTAAAGACCATTTACAACTATGAGGTGAACCATGTGGCAATGTAGGCCTTATCtgttccttcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagtacaaccaaaaatgtattgtaagaGAATAAATTAAGGAATCATAAAGAAAATGACCTGTTACACTTTGGTGTGACAGTACAATGTCCATAAGCACTGAACTGGGTACAGCATTCCCTGTAAATTCCTACCCTTAACCATTGTGAATCGAATAACAGTGCTGATTGTAGATCAGTGCAGACAATATCACGGCCATAAACCAATACAAACATGACAGAACAGACACAGATCTTGGCTGGCCATCATTTACATTAACAGCACTCTCTCCATTTTGAACAAGGGGAGAGTgggataagggaggagagggggaggaggtacaAGGGGAGGtgggataagagaggagagggggaggaggtacaAGGGGAGGTGGGATATGGGAGGAGGTACAAGGGGAGGTgggataagggaggagagggggcggAGGTACAAGGGGAGGTgggataagggaggagagggggaggaggtacaAGGGGAGGTgggataagggaggagagggggcggagggacaaGGGGAGGTGGGATAGGAGGGGAGTGCCTGTGGCACATAAAAATCACCCATTGTATTTTTGGCCAAGAGTAATTCATAATACCAACAACAATCATAACCATGGCAAACAATCCTTTTATAAAACAAAGCTGAATTATTTTCAGTTCAGTGCTGCTGCATGCTCCTCGGTgtaaaatggcaccctgtttctGTTCCTTCCTCAATTTGTTCCTTGATCATTCTAATGATCCAATAGGAACGCTCCGTGAAAGCCCCTTCTCCACTCCAATTAGCCAGCAAGTCCGTCAATCATTTGTCAACCCCGCTGCCGTGCTCAATATGGCCGCCATACGGCCTCGGGTACCATATTGGTAGGGGAGCTACTGTGACTTCCCTCCGCTTCCACCCCCACCCCTTCGCTCTGATTTGGCAGAGACGGGTGCAGGAGGGAGGAGCCTGTGGATGCGTTGGTGCAGGGAGGGAATATCCTCGGAGGAGACCGCTCCCCGCCTCCCCCCGCCATCATGGAGAATTGGTAGGACCCAGCTGCCGTGCTATAATACAGGTGATAGGGAGAGGAACCGGCCTGGAACGGTCCACTTTGGCCCTGGGGGGCGTTTGTAGGGTAGGGCGGGGGGAGGTAGGTGTGGTAACGCCCAGCAGGGGTGGTTGCCATGGTCAGTCCGATGGCGCCGTTGGATACAGGGGTAGGGGTGTATGTGAAGGCCCCAGTAGGGTAGTGCATGCGCGGGTCAGGGTAGCGGCTGTCAGGGAGTGAGGTCAGGGAGGAGAACGGGCGATCCAGGGACATACGGGGGTCGCTGAAGGCTGTGAGGTCA

Function

NR:

description
runt-related transcription factor 1-like isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1741017 True 1638 lncRNA 0.51 3 15876151 15878418

Neighbor

gene id symbol gene type direction distance location
LOC110495649 LOC106574731 coding upstream 11112 15852644 ~ 15865039 (+)
LOC110495650 LOC106575578 coding upstream 23894 15847368 ~ 15852257 (+)
LOC110495648 LOC106575580 coding upstream 34506 15825848 ~ 15841645 (+)
LOC110495647 NA coding upstream 55690 15817497 ~ 15820461 (+)
LOC110495646 LOC106575584 coding upstream 67665 15804179 ~ 15808486 (+)
LOC110495654 LOC106575575 coding downstream 115195 15993613 ~ 15996859 (+)
LOC110495655 LOC106574721 coding downstream 131357 16009775 ~ 16021896 (+)
LOC110495658 LOC100136184 coding downstream 168727 16047145 ~ 16060945 (+)
LOC110495657 LOC100380633 coding downstream 197574 16075992 ~ 16089889 (+)
LOC110495667 LOC106575562 coding downstream 393818 16272236 ~ 16277918 (+)
G1520691 NA non-coding upstream 5485 15869734 ~ 15870666 (+)
G1520677 NA non-coding upstream 51011 15824727 ~ 15825140 (+)
LOC110495637 LOC106575461 non-coding upstream 201489 15622187 ~ 15674929 (+)
G1520560 NA non-coding upstream 244066 15577484 ~ 15632085 (+)
G1520704 LOC106595378 non-coding downstream 7924 15886342 ~ 15893668 (+)
G1520705 NA non-coding downstream 8767 15887185 ~ 15887551 (+)
G1520737 NA non-coding downstream 23823 15902241 ~ 15906967 (+)
G1520738 NA non-coding downstream 35022 15913440 ~ 15916546 (+)
G1520739 NA non-coding downstream 38208 15916626 ~ 15917232 (+)
G1520649 NA other upstream 60146 15756493 ~ 15816005 (+)
LOC110495644 LOC106575583 other upstream 76270 15796262 ~ 15801788 (+)
LOC110495440 LOC106575601 other upstream 659907 15207355 ~ 15251952 (+)
il8r il8r other upstream 975979 14898154 ~ 14901354 (+)
G1519733 NA other upstream 1061265 14813982 ~ 14814886 (+)
G1520742 NA other downstream 40739 15919157 ~ 15922899 (+)
G1520748 NA other downstream 59812 15938230 ~ 15938818 (+)
LOC110495674 LOC106575504 other downstream 587095 16454118 ~ 16468453 (+)
LOC110527374 LOC106592210 other downstream 1745398 17623786 ~ 17631132 (+)
G1522415 LOC106575491 other downstream 1887801 17766219 ~ 17766694 (+)

Expression


Co-expression Network