Gene
RNA
| Item | Value |
|---|---|
| gene id | G1520704 |
| gene name | LOC106595378 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 15886342 ~ 15893668 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: runt-related transcription factor 1-like, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1741031 | True | 691 | lncRNA | 0.56 | 3 | 15886342 | 15893668 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110495649 | LOC106574731 | coding | upstream | 21303 | 15852644 ~ 15865039 (+) |
| LOC110495650 | LOC106575578 | coding | upstream | 34085 | 15847368 ~ 15852257 (+) |
| LOC110495648 | LOC106575580 | coding | upstream | 44697 | 15825848 ~ 15841645 (+) |
| LOC110495647 | NA | coding | upstream | 65881 | 15817497 ~ 15820461 (+) |
| LOC110495646 | LOC106575584 | coding | upstream | 77856 | 15804179 ~ 15808486 (+) |
| LOC110495654 | LOC106575575 | coding | downstream | 99945 | 15993613 ~ 15996859 (+) |
| LOC110495655 | LOC106574721 | coding | downstream | 116107 | 16009775 ~ 16021896 (+) |
| LOC110495658 | LOC100136184 | coding | downstream | 153477 | 16047145 ~ 16060945 (+) |
| LOC110495657 | LOC100380633 | coding | downstream | 182324 | 16075992 ~ 16089889 (+) |
| LOC110495667 | LOC106575562 | coding | downstream | 378568 | 16272236 ~ 16277918 (+) |
| G1520697 | NA | non-coding | upstream | 7924 | 15876151 ~ 15878418 (+) |
| G1520691 | NA | non-coding | upstream | 15676 | 15869734 ~ 15870666 (+) |
| G1520677 | NA | non-coding | upstream | 61202 | 15824727 ~ 15825140 (+) |
| LOC110495637 | LOC106575461 | non-coding | upstream | 211680 | 15622187 ~ 15674929 (+) |
| LOC110495451 | fbx36 | non-coding | upstream | 271666 | 15603978 ~ 15615215 (+) |
| G1520737 | NA | non-coding | downstream | 8573 | 15902241 ~ 15906967 (+) |
| G1520738 | NA | non-coding | downstream | 19772 | 15913440 ~ 15916546 (+) |
| G1520739 | NA | non-coding | downstream | 22958 | 15916626 ~ 15917232 (+) |
| G1520743 | NA | non-coding | downstream | 33721 | 15927389 ~ 15927935 (+) |
| G1520744 | NA | non-coding | downstream | 34518 | 15928186 ~ 15928745 (+) |
| G1520649 | NA | other | upstream | 70337 | 15756493 ~ 15816005 (+) |
| LOC110495644 | LOC106575583 | other | upstream | 86461 | 15796262 ~ 15801788 (+) |
| LOC110495440 | LOC106575601 | other | upstream | 670098 | 15207355 ~ 15251952 (+) |
| il8r | il8r | other | upstream | 986170 | 14898154 ~ 14901354 (+) |
| G1519733 | NA | other | upstream | 1071456 | 14813982 ~ 14814886 (+) |
| G1520742 | NA | other | downstream | 25489 | 15919157 ~ 15922899 (+) |
| G1520748 | NA | other | downstream | 44562 | 15938230 ~ 15938818 (+) |
| LOC110495674 | LOC106575504 | other | downstream | 571845 | 16454118 ~ 16468453 (+) |
| LOC110527374 | LOC106592210 | other | downstream | 1730148 | 17623786 ~ 17631132 (+) |
| G1522415 | LOC106575491 | other | downstream | 1872551 | 17766219 ~ 17766694 (+) |
