G1520737


Basic Information

Item Value
gene id G1520737
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15902241 ~ 15906967 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1741066
CTAAAGTAAATCATTCCCCCTTGAATAAAGCATTATAATTCAGTCAATCAAATAAGTCCGTTATAACCACATCCAATGACTCACGTTAGAAAGTATAGTTATATCTCTGTGCAGGTGTGTGTCGTGACGGCAAGGCCCGGGCCAGCCGCCGTTTGAGCATTTGACTGGAAACGCATTTTGTCGCAATTGTTTGTGTTGAAATATATCCGTGCTGAGAGACGGACACAACTAATCTTTACATTTTTAacatttaattaggcaagtcagtaaagaacaaattcttcttacaatgacggactaccggggaacagtgggttgttcaggggcagaacgaacgggcagaacgacagattattactttgtcagctcggggattcaatccggcaacctttcggttactgacctaacgctctaaccactaggctacctgccgccaccgATAATGTTATCTTTTACAATGCAGCACACCACAGCACTTCACGCAGAACCGACCAGCACATGCCAGATGGTCCCTTAACTTTAAACAACAACCAAAGAATAGGGCACAAATTAGGACTACATTTATGTTTGAAATTTAGGacacaaaatatttcaaactgaTGAAGCGGTTCTCAACACATCAGTTTAACAGAGTATAAGAGATACATTTGATTGCAAACGGATCCCACTAAATCTATAATTGGAGATTTAATTTATTATAGCCTATTCTAATATCGTCGTATATACATTTAGGATTTCATTAATAAAACACAAAGCTCAGTTAAAATGTCCCCATGGAGATGTGCTAATTATTAGATCATCgttaaaaacaacaaaacaaagcaTATAGCCTATTTACTCCTATTTGACACATCAAATGAAATAGATTCGATTCTAattaaaacaaatacaatttagTTTTTTCACATGCTAAATAAATGTGATGCAGTATGATTTTTGAAAGCCGTGAAAATGTTGGTTGCCTATAattttgaaataaaaaaaacctaTAGCCTCAAGTTTAAAAAATTCGCGATTTCAATATAATTTAAGGAAATATTTCCTCACAAATGAACCGACTTTATTGTTGCCTAAAGGAAGAACTGCTACTTTgacaggacagacagggagagttcaacaagagagagagcgagaggcttGGATTTCCTCTCGTCCCGTTCACCTCTGAGCAACGGTAATCGGATAGGCGCAAACTGCTTGATCAATAATGTATGTAGTCGGCTATCAAATCTATCGATATGCGTCGCGAGGCTACACGCTGCAGCATGTTTGCGCGATTAACTGGAGGCCGCTTCCATTGCATTGGGAAATAATCAATTCTGGAGAGATGATTGGTTTAAATGACAAGTCATCATCAGCATAAACCACGAATATAGCCCACCCATGAATTTATAGGCCTACAGATTAATATAACCTAAACATTTTTCGAGGTAAAATAAGAAATATCTTGAGCACATCATTCAGTCTTTTGTTCTTTGAGCATCAGTTAACATCAAGTAAGGTGAACCACCCAAACCAAAATACAGCCACAGCACACAGAAATAAAAACTGTTGTATGTTGTATCAATCAAATGTTTCACTCTTGGTTTCTTCACCCCATTCAGGACAACATTGGAAAACAGACTGGAGAAAGAATGAGAGGTGAGAGAAAAGTAAACAAAAGAAGATTTAAAAAGGCTGAGAGGAagctggtgatgatgatgatggtggtggggaTGATGATGAAGATCATGAAGAAATAGCAGTAGGTAAAGATGAGATGAGGAAGATTCAGGGCAAAGGTCTTTCAATTtgacaaacaaaaacaaagacgacagtgatgatgttgatgataatgatgaagaGGAAGGGGTAGACGAAGACGACAGTGGTTGAGAGGCAGAcagtgatgatgttgatgataacGATGAAGAGGAAGGGGTAGACGAAGACGACAGTGGTTGAGAGGCAGAcagtgatgatgttgatgataacGATGAAGAGGAAGGGGTAGACGAAGACGACAGTGGTTGAGAGGCAGAcagtgatgatgttgatgataacGATGAAGAGGAAGGGGTAGACAAAGACCCAGGTGTAGTAATAAAAGCAGGATAGATTACCAAAGAGCCCATTGCCAGTTCGGCCTTTCCTCATCAGGTACATGGCCCAGGACAGGGGACCGGAGTTGGAGAAGGGCCCAGGATTCATGCTTCGTCTCTGGGTACTTGCGGAGCGAACGGTGGGGTGGGTTTTTAAGACCCAGCACAGGAATATGGAAAGCTAGATCCCCCTCACTCTCACCCTCATCCTTTTATACCCACCCACCCTACCCACCTCCCCCCCTCGCCCAAGATATTAGTGAAAAACTGAAaacgagagaaagaaggagagaaaggaggggaaaaCGGATGGCATCCACTCATGCTTAATATATTCCCTCACTAAGCGTAGCCCCGGGGGACTCGGCATCACTCTGCCCTCAGGCAACTCAGACCTGCTAATTTCATTTAGCGACTCAAatgatttttctctctctcctttcctctctccatcgctcccccctccatgtctttctctcacctctccccctcgCTTCTTTTTCTAAAGTTCTGACAAATGGTGAAAATAAAGGCAAAGACTTAAACTTGCGAGAGCAGGGGATTGAGTTGGTCTTAGCCATAAAGACTGGTTTGTGTTTTAAGTAATTGTCATCGAGTTTGTGGATCACATGAAGAAGGACCATTTTCTCAGTGGTTCACGCCTGAGTTTGGGAACCACACGGTCCTTACACTGGAAGATCTGCACACCAGATTCGAACGACGGAGACAGTATGATTTGCCTGTGACAGCTCCTGAGGTGACATGACCACTATGGCTGGTCTCTGGCTTCCTGGAAACCACCTAGCGTGACACGGATCAGTCCTCTGGTCTGGCTGAGGTTGGTGCATGGCCACTGAGGTTTCTGGGTCGTCCTCCACACACACCCCGAATCCACCACTCATAGTCACTATCCCACAGACCTGGGCCCAACGGAACTCTGGGTACACCAGTGGCAGTACCACAGGACaccgaatgtgtgtgtgttgcagggatCTGGTACGCCACAGCAGGTCATGATGGTCTAGTGAAGGCACTACTAGGGACAAGCTTGACAGGATGCGTTACCTCTGTCACCACACTGTATTAGTTGGTTGGAACCTCCTCTTCCACTCTGCCAATCTCTGCAGGTCAGAGTTTCTCTTTGGGGACGTGGATTGAACTGTCCCTCTAATCGTCTTTTTctttatatttgtttatttttatatttttcccTCTCTTAGGGGACTGCTCTCTTTGCCAGGGGCAGTCTTtcccctgctgtctctagagttgGGGCCACCCTGAGGCCAGCACCAGAGCCACACTGAGGATCAATACCCACACACTCGCCCCTCCTCACCACCTTCACCACCTCCCTGAACACGGGATCGATGGAGAGATACAGCCTGGGGAGGAGTCTCATAGAGCTTCAAAGAGCTTCTCATCAGTCACTcatcactcagtcactcagtcactcatcACTCAGTCACTCATCACTCACCTGCTGAAAGTGTTAGCAGATTGTTTTAAGTTTATTGTAGAAGATTTACAGAAGTTGGAATTGAATGTTTCTGTAATCAAACATTGTGAAAGCAGTGATAGTGACTCTCAAGTTAAAATAGAGGGGGGAAAAATTGAGGCTTGCACGTACGCACGTACGCACTATCACCTCCTCTATAATTCATGGGGCTGTATTGTTTGGATGCAGTTAACTGCTACTTAAAAGTAATTAATTGATTTTCTGACATATCAGTTAGCAGCACTGCCAAGTGACAGAACAGAGTGGTCCAGCACCTGGTTAacagacacacaccttcacatagccgcacacacgcacgcacgcaagcacgcacacacacacacactcacactccaggAATGGGACAAACAGCCCACACACACTCAGTCCAGCTGTATTTACATTGCAACTAAGGATAAACTCTTAACCAGtgacacatacaacacaaacacacagcatttCAAAGGAGCAGTTTTTCCCATGGTCCCTTTCCTGTACTCCCCTGCCCCATCTCTGAATCCCCTAGGGCCCAATAGACCCAGTAATGCTAACATGGCTAACACCAGAACTAGTATCATGACAAGATAATCAGGCTAATCTGTCAATCACAACTAAATCAGAATACTACAATGAATTCATCCCTCAATCCAAGTGCTGTTTGATTTGGTCATTTCTGACTGAAGATATGACTCAGTGCATTGAGTTTGTCTGTGTCTGAAACCTGCCAGTCTTCAGAAGggaaggcttgtgtgtgtgtgtgtgttgaataaTTCAGCGTGCTCTCAGATGAGAGAAAACTAGCAGCTCTATGAGGCACTCCTCCTGTGGAACTACTGATTGATTTTCTGACACAAGCTATGAGaagagaatatgagagagagagagaggagaggagaggagaggagagagggtcacATAGCGCTCAACGGTTTGAAGTGATGTATCTGTCTAAACGTTACTGTGACACCCGTTTGTAACCTTGTAATGTTGACACCTATTCCAGTCATAGTATACATCCTATGCACAGTTCAGCTGTCCACACTTCACTTTTCACCTACAGCTTATATCTCAGCACCTCTGTCCTTGCTGTACAGCGCActgagcagggagagagggatggaaggatggaaggagggacggagacagga

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1741066 True 4727 lncRNA 0.44 1 15902241 15906967

Neighbor

gene id symbol gene type direction distance location
LOC110495649 LOC106574731 coding upstream 37202 15852644 ~ 15865039 (+)
LOC110495650 LOC106575578 coding upstream 49984 15847368 ~ 15852257 (+)
LOC110495648 LOC106575580 coding upstream 60596 15825848 ~ 15841645 (+)
LOC110495647 NA coding upstream 81780 15817497 ~ 15820461 (+)
LOC110495646 LOC106575584 coding upstream 93755 15804179 ~ 15808486 (+)
LOC110495654 LOC106575575 coding downstream 86646 15993613 ~ 15996859 (+)
LOC110495655 LOC106574721 coding downstream 102808 16009775 ~ 16021896 (+)
LOC110495658 LOC100136184 coding downstream 140178 16047145 ~ 16060945 (+)
LOC110495657 LOC100380633 coding downstream 169025 16075992 ~ 16089889 (+)
LOC110495667 LOC106575562 coding downstream 365269 16272236 ~ 16277918 (+)
G1520704 LOC106595378 non-coding upstream 8573 15886342 ~ 15893668 (+)
G1520705 NA non-coding upstream 14690 15887185 ~ 15887551 (+)
G1520697 NA non-coding upstream 23823 15876151 ~ 15878418 (+)
G1520691 NA non-coding upstream 31575 15869734 ~ 15870666 (+)
G1520677 NA non-coding upstream 77101 15824727 ~ 15825140 (+)
G1520738 NA non-coding downstream 6473 15913440 ~ 15916546 (+)
G1520739 NA non-coding downstream 9659 15916626 ~ 15917232 (+)
G1520743 NA non-coding downstream 20422 15927389 ~ 15927935 (+)
G1520744 NA non-coding downstream 21219 15928186 ~ 15928745 (+)
G1520747 NA non-coding downstream 25793 15932760 ~ 15932979 (+)
G1520649 NA other upstream 86236 15756493 ~ 15816005 (+)
LOC110495644 LOC106575583 other upstream 102360 15796262 ~ 15801788 (+)
LOC110495440 LOC106575601 other upstream 685997 15207355 ~ 15251952 (+)
il8r il8r other upstream 1002069 14898154 ~ 14901354 (+)
G1519733 NA other upstream 1087355 14813982 ~ 14814886 (+)
G1520742 NA other downstream 12190 15919157 ~ 15922899 (+)
G1520748 NA other downstream 31263 15938230 ~ 15938818 (+)
LOC110495674 LOC106575504 other downstream 558546 16454118 ~ 16468453 (+)
LOC110527374 LOC106592210 other downstream 1716849 17623786 ~ 17631132 (+)
G1522415 LOC106575491 other downstream 1859252 17766219 ~ 17766694 (+)

Expression


Co-expression Network