G1520738


Basic Information

Item Value
gene id G1520738
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15913440 ~ 15916546 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1741067
GCAGATGACAGCGCAGAAACAGGTGGACCTAAACTACCCTgatgcgtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagcagaatCACGAAGAGCTAAATCACAACACCTAATTACTCTAGCAGACAtcgtcagtcagacagacatatAAAACCAAGTCACTGTGGCTGGCCCAGATACGAACCCTAACCCAGGGCCGCGTTCACTTACACTTAGTTACATCAGACATGGCATATGGTTGACATGTGACTGACCGGGTATAGAAGCTTGGTCATCCGCTAGATTTATGAgcgtgttagcccactgagctagaGTATTGCTGTTGGGCCTATCACAGAGTTACTAGTCCTCAATGAACCATGATCCAGAAGAGGACGAAGCACAGATGCACGGTATGCATgggtgtgagaatgtgtgtgtgtacgtgactTTGAACTTATCTACATCTGAATCATTTGTCTGACAAATAGATTtccagggacaggagagagagagagagagcgagagagagatagagacagacagaaagagtgagACACATATtgagatagacagagatagagagagcaagcAAGAGGGAGAGGCCAGATCTCTTCATTAGCAGCTTAGAAAATGTAAAGCAGTGTTTTGTGTGTTCTCATAATGCCTCACTATGGGTTACAATGACTCACTGTGCTGTACATTATCTtcctcacacaaacacaaagtGATGTCCGTCTGTTGGGCGACCCTCTTTGTGAGTGCCCTAGTGCCTGTATTGAATAGTGTTGCTGTCCTTGCTGTAATGGTGACCAGATAGAGGAGACAGTGAAGGGGAAGGAAGCAGAGCAGCTGTGTGTGTAAGGAGCCGTTAGGAGACAAGGacgtaatacacacacacacagtcaaaggaCATCTCAGGAAACAGCTCTGTGAAAGtgctctgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtactatgctagtgtgtgagagagaacagaaagatagACAGAGTGAGCCGTCTGTTTTGAATATGGGTTAGCCATTCTGGTTAGCCACAGTCACCTCTCTATGTCACCACCGTCTGTCTACTACTGCTGATACACACAGAACTGCTTTACCCACAGCTTTCCTACCACagagtgttagggctctattacCCACAGCTTTCCTACCACAGCACCACATAGTGTTAGGGCGCTATTAGCCAGAGCTTTTCTACCACAGCACCACagagtgttagggctctattgCCTACAGCTTTACTACCACATCACTACagagtgttagggctctattacCTACAGCTTTACTACCACAGCACCACagagtgttagggctctattacCCACAGCTTTACTACCACAGCACCACagagtgttagggctctattacCCACAGCTTTACTACCACAGAGTGATAGGACTCTATTACCCACAGCTTTACTACCACAGCACCACagagtgttagggctctattacCTACAGCTTTACTACCACAGCACCACAGAGTGTTAGGACTCTATTACCTACAGCTTTACTACCACAGTGCCACagagtgttagggctctattacCCACAGCTTTACTACCACAGCACCACagagtgttagggctctattatCCACAGCTTTACTACCACagagtgttagggctctattacCCACAGCTTTACTACCACAGAGTGTTAGGGCTCTGTTACCCACAGCTTTACTACCACAGCACCACAGAGGGTTAGGGCTCTATTACCTACAGCTTTACTACCACAGCACCACAGAGTGTTAGGACTCTATTACCTACAGCTTTACTACCACAGCACCACAGAGTGTTAGGACTCTATTACCCACAGCTTTACTACCACAGCACCACagagtgttagggctctattacCCACAGCTTTACTACCACAGCACCACagagtgttagggctctattacCCACAGCTTTACTACCACagagtgttagggctctattacCCACAGCTTTACTACCACagagtgttagggctctattacCCACAGCTTTACTACCACAGCACCACagagtgttagggctctattacCCACAGCTTTACTACCACagagtgttagggctctattacCCACAGCTTTACTACCACAGCACCACagagtgttagggctctattacCCACAGCTTTACTACCACAGCACCACagagtgttagggctctattacCCACAGCTTTACTACCACagagtgttagggctctattacCCACAGCTTTACTACCACagagtgttagggctctattacCCACAGCTTTACTACCACAGTACCACagagtgttagggctctattacCCACAGCTTTACTACCACagagtgttagggctctattacCCACAGCTTTACTACCACagagtgttagggctctattacCCACAGCTTTACTACCACagagtgttagggctctattacCCACAGCTTTACTACCACagagtgttagggctctattacCCACAGCTTTACTACCACagagtgttagggctctattacCCACAGCTTTACTGTAACGTTCGCcgtcttcctctgatgaggagtaagagaggtcggaccaatttgcagcaTGGTATGTGTCAATTTtaataagacaaactgaacactacacaaatacaaaataacaaagtaaaACAAACGAAACGGTCCCGTGTGGTAACAAACACTAACACGGAAATTAATCAACCACAACTctaaagtgaaaccaggctacctaaatatggttctcaatcagggacaacgataaacagctgcctctgattgagaaccataccaggccaaacacagaaatcccaaaacatagaaaaaggaacatagacaacccacccaactcacgccctg

Function

NR:

description
uncharacterized protein LOC111196819

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1741067 True 3013 lncRNA 0.46 2 15913440 15916546

Neighbor

gene id symbol gene type direction distance location
LOC110495649 LOC106574731 coding upstream 48401 15852644 ~ 15865039 (+)
LOC110495650 LOC106575578 coding upstream 61183 15847368 ~ 15852257 (+)
LOC110495648 LOC106575580 coding upstream 71795 15825848 ~ 15841645 (+)
LOC110495647 NA coding upstream 92979 15817497 ~ 15820461 (+)
LOC110495646 LOC106575584 coding upstream 104954 15804179 ~ 15808486 (+)
LOC110495654 LOC106575575 coding downstream 77067 15993613 ~ 15996859 (+)
LOC110495655 LOC106574721 coding downstream 93229 16009775 ~ 16021896 (+)
LOC110495658 LOC100136184 coding downstream 130599 16047145 ~ 16060945 (+)
LOC110495657 LOC100380633 coding downstream 159446 16075992 ~ 16089889 (+)
LOC110495667 LOC106575562 coding downstream 355690 16272236 ~ 16277918 (+)
G1520737 NA non-coding upstream 6473 15902241 ~ 15906967 (+)
G1520704 LOC106595378 non-coding upstream 19772 15886342 ~ 15893668 (+)
G1520705 NA non-coding upstream 25889 15887185 ~ 15887551 (+)
G1520697 NA non-coding upstream 35022 15876151 ~ 15878418 (+)
G1520691 NA non-coding upstream 42774 15869734 ~ 15870666 (+)
G1520739 NA non-coding downstream 80 15916626 ~ 15917232 (+)
G1520743 NA non-coding downstream 10843 15927389 ~ 15927935 (+)
G1520744 NA non-coding downstream 11640 15928186 ~ 15928745 (+)
G1520747 NA non-coding downstream 16214 15932760 ~ 15932979 (+)
G1520751 NA non-coding downstream 32280 15948826 ~ 15949093 (+)
G1520649 NA other upstream 97435 15756493 ~ 15816005 (+)
LOC110495644 LOC106575583 other upstream 113559 15796262 ~ 15801788 (+)
LOC110495440 LOC106575601 other upstream 697196 15207355 ~ 15251952 (+)
il8r il8r other upstream 1013268 14898154 ~ 14901354 (+)
G1519733 NA other upstream 1098554 14813982 ~ 14814886 (+)
G1520742 NA other downstream 2611 15919157 ~ 15922899 (+)
G1520748 NA other downstream 21684 15938230 ~ 15938818 (+)
LOC110495674 LOC106575504 other downstream 548967 16454118 ~ 16468453 (+)
LOC110527374 LOC106592210 other downstream 1707270 17623786 ~ 17631132 (+)
G1522415 LOC106575491 other downstream 1849673 17766219 ~ 17766694 (+)

Expression


Co-expression Network