G1522278


Basic Information

Item Value
gene id G1522278
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17456742 ~ 17461988 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1742883
acttataactaaataacggtcatcttcaccattatatcagtactacaactaccatcatcatcattactactaccaccaccatcactaaagtgctatcattaccattaccacccataccactactactaccaccatcactaaacttttatcattaccattaccacccataccactaccactactactaccaccaccatcactaaactgtcagtaataccattaccacccataccactactactactactactaccaccatcactaaactgttataaTTACCATTACCAcctataccactactactactactaaaaccatcactaaactgttatcattaccattaccacccataccactactactactactaccaccacatcactaaactgttatcattaccATTATCACCCAttccactattactactactaccaccatcaataaactgttatcattaccattaccacgcataccactactactactactaccaccaccatcacgaaactgtcatcattaccattaccacccataccactactactactactaccaccaacatcactaaactgttatcattaccattaccacccatacccctactactactaccaccaccactaaactgttatcattaccatttcCATccaaaccactactactactaccaccaccatcacgaaactgtcatcattaccattaccacccataccactactactactactacccccaccttcactaaactgttatcactaccattaccacccataccactactactactactactaccaccaccatcactaaactgtcatcattaccattaccacccataccactacctctactactactaccaccacaatcacTAAACGGGTCATCAttatcattaccacccataccactactactactactactaccaccacaatcactaaactgtcatcattaccattaccacctataccactactactactactactaccaccacaatcactaaactgtcatcattaccattaccacccataccaccactactactactactactaccaccaccatcactaaactgctatcattaccattaccacccaaaccactactactactactaccaccatcactaaactgttatcattaccattaccccccataccactactactactactactaccaccatcactaaactgttatcactaccattaccacccataccactactactactactaccaccatcactaaactgttatcattaccattaccacccataccactactactactactactaccaccatcactaaactgttatcattaccattaccacccatacactactactactactactaccaccatcactaaactgttatcactaccattaccacccataccacaactactactactactaccaccaccatcactaaactaaactgtcatcattaccattaccacccataccactacctctactactactaccaccacaatcactaaactgttatcattaccattaccacccatacactactactactactactaccaccatcactaaactgttatcactaccattaccacccataccactactactactactaccaccaccatcactaaactgtcatCATTGCCTTTACCACccatactactactactactactactaccaccatcactaaactgttatcattaccattaccaaccacaccactactactactactactaccaccaccatcacgaAACTGTCATCATTGCCATTACCacccatactactactactactactactactaccaccaccatcactaaactgttatcattaccattaccacccataccactactactactactactaccaccatcactaaactgtcatcattaccattaccacccataccactactactactactactaccaccaccataactaaactgttatcattaccattaccacacataccactacttctactactaccaccaccataacgAAACTgtcatcattaccattaccacccataccactactaccactattaccaccaccaccatcactaaactgttatcattaccattaccaccgataccactactactactactaccaccaccatcattaaactgttatcattaccattaccaccaataccactactattactaataccacaccactaaactgtcagtattaccattaccacccataccactactaccactactaccactaccaccaccatcagtaaactgttatcactaccattaccacccacaccactactactactactactactactaataccaccatcactaaactttCATCATTACCaataccacccataccactactactactactactaccaccatcactaaactggtatcattaccattaccacccataccactactactactaccaccaccatcactaaactggtatcattaccattaccacccatagcactactactactactactactactactacccccatcactaaactgtcatcattaccattaccacccataccactactactactactaccaccaccataactaaactgttatcattaccattaccacccataccactactactactaccaccaccatcactaaactgtcagTATTACCATTatcacccataccactactactactaccaccaccatcactacactgttatcattaccattaccacccataccactactactactaccaccatcactaaactgttatcattaccattaccacccataccactactactactactactaccaccatcactaaactgttatcactaccattaccacccacaccactactactaccaccaccatcactaaactgttatcattaccattaccacccataccactactactactaccaccaccatcactaaactgtcagtattaccattaccacccataccactactactactattactaccaccaccatcactaaactgttatcattaccattaccacccataccactactactactactactaccaccatcactaaactgttatcactaccattaccacccacaccactactactaccaccaccatcactaaactgttatcattaccattaccacccataccactactactactaccaccaccatcactaaactgtcagtattaccattaccacccataccactactcctactactactaccaccgccatcactaaactgttatcattaccattaccacccataccactactactactaccaccaccatcactaaactgtcagtattaccattaccacccataccactactactactattactaccaccaccatcactaaactgttatcattaccattaccacccataccactactactactactactaccaccatcactaaactgttatcactaccattaccacccacaccactactactaccaccaccatcactaaactgtcagtattaccattaccacccataccactactactactattactaccaccatcactaaactgttatcattaccattaccacccataccactactatttggaatgataaacaataacaataatag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1742883 True 3625 lncRNA 0.40 4 17456742 17461988

Neighbor

gene id symbol gene type direction distance location
LOC110495692 tm182 coding upstream 387464 17065877 ~ 17069278 (+)
LOC110495691 LOC106574621 coding upstream 447203 17005029 ~ 17009539 (+)
LOC110495688 LOC106574622 coding upstream 454786 16987740 ~ 17001956 (+)
LOC110497065 LOC106574631 coding upstream 472594 16973083 ~ 16984148 (+)
LOC110495683 LOC106575518 coding upstream 773665 16613649 ~ 16685491 (+)
LOC110527364 LOC105019822 coding downstream 89266 17551254 ~ 17554607 (+)
mrps9 LOC106574616 coding downstream 130457 17592445 ~ 17610875 (+)
LOC110527370 LOC106575456 coding downstream 149544 17611532 ~ 17620435 (+)
LOC110527374 LOC106592210 coding downstream 161798 17623786 ~ 17631132 (+)
LOC110527377 LOC100136320 coding downstream 169691 17631679 ~ 17636584 (+)
G1522233 NA non-coding upstream 64361 17392142 ~ 17392381 (+)
G1522206 NA non-coding upstream 114347 17342167 ~ 17342395 (+)
G1522197 NA non-coding upstream 138934 17317578 ~ 17317808 (+)
G1522196 NA non-coding upstream 139213 17317197 ~ 17317529 (+)
G1522146 NA non-coding upstream 192179 17264052 ~ 17264563 (+)
G1522291 NA non-coding downstream 34547 17496535 ~ 17496866 (+)
G1522295 NA non-coding downstream 38564 17500552 ~ 17500753 (+)
G1522298 NA non-coding downstream 42949 17504937 ~ 17505216 (+)
G1522310 NA non-coding downstream 68414 17530402 ~ 17585619 (+)
G1522336 NA non-coding downstream 115614 17577602 ~ 17578064 (+)
LOC110495674 LOC106575504 other upstream 988319 16454118 ~ 16468453 (+)
G1520748 NA other upstream 1517924 15938230 ~ 15938818 (+)
G1520742 NA other upstream 1533843 15919157 ~ 15922899 (+)
G1520649 NA other upstream 1640737 15756493 ~ 15816005 (+)
G1522415 LOC106575491 other downstream 304231 17766219 ~ 17766694 (+)
G1522437 LOC106575479 other downstream 377681 17839669 ~ 17844014 (+)
G1522438 NA other downstream 394153 17856141 ~ 17860614 (+)
G1522684 NA other downstream 917099 18379087 ~ 18380258 (+)

Expression


Co-expression Network