G1522385


Basic Information

Item Value
gene id G1522385
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17670456 ~ 17671940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1743008
ccttaccctaaccaatCGCTAGCATGCCCAAagctaaccttaccctaaccaatCACTAGCATGCCCAAagctaaccttaccctaaccaatCGCTAGCATGCCCAAagctaaccttaccctaaccaatCGCTAGCATGCCCaaacctaaccttaccctaaccaatCGCTAGCATGCCCaaacctaaccttaccctaaccaatCGCTAGCATGCCCaaacctaaccttaccctaaccaatCGCTAGCATGCCCAAACCTAACCTGTTGCGCTTGCATGTTGCGCAAATCACTCAATCTCAATCAATACAGGAAGAGTGTCTATGTTCTTGCCAGGGTCTGAGACTTGTCCTCCCTTATCCTCTCTGTACAACTTGTGCTCCCCTGAATATGACATCCAAACTAGTGACTTTCATTCTCCTGAATCCACACCTTTATCTTAAGTCCACTGTCTGTTCATTGATGATTGATTACATTGATGAGACATTGTTATTATTtgacatatttctgtatttctatAAATGCTGGCGTTGATGAATTATCAGCCATCTCACGATGACGTCCTCTCTCTATCGATCACACACTATCAGCACAAATAGaaacctcttctctcctccactccacaaTGAGACGCGAAGCCAAATCCAATCTGGGTTTAATGTCGTCTGGGGACCGAACATCCTGACTCCCCTCAGCTCGCTGGGACTGAACTGTCTTCCGTAAGAGATATATTGGTTTGTAACAGTTTCCTCAGGGAGTTGTTTTGGTACTGAACACTTTCTTCAGTGAGACATGTTCCATGCTGAACACTTTCTTCAGTAAGAAATGATGTTTTTGGTGATGAAGGTTCCTCTGTAAGATGATTCAGTACTGACCAGTTTCCCCACGAACAGATTCTGTTTCAGTACTGACCAGTTTCCCCACGAACAGATTCTGTTTCAGTACTGACCAGTTTCCCCACGAACAGATTCTGTTTCAGTACTGACCAGTTTCCCCACGAACAGATTCTGTTTCAGTACTGACCAGTTACTCCAGTAACAGATTCTGTTTTGGTGCTGACCAGTTTCTATCAGGTCCTGAACACCTCCCTTTATTAAGGGAGGTCCATTTGAATATTCTTCAGATGTCCGTTCAGGTCAATAAACCACGACAGGTTAATCGTTTCCTCAGTGAGAGTGGTTGGTTGGGTCCTGTTATTGCTGCTCGTTTTCATCAGAGATCACCAGCTATCACGCTCCTCCCGTCCCAAGTTCCTCTTCTGTCTGTTTCTGCTGATTTGGATGTAAAATCCAATTCGGCTTCATGGTCCACACTCCACAATGTTCTTTACGGATCAACACACAGAGactggcagagacacacacacagactggcagagacacacacagactggcagagagacagaccgacagagtgAATAACGTGGCGATCCTTCCAACAGTCTCTCATGGTGACAACACTCCTCGTGGTGAATCTGATTCTCAGCTCC
>TU1743009
ctaaccaatCACTAGCATGCCCAAagctaaccttaccctaaccaatCGCTAGCATGCCCAAagctaaccttaccctaaccaatCGCTAGCATGCCCaaacctaaccttaccctaaccaatCGCTAGCATGCCCaaacctaaccttaccctaaccaatCGCTAGCATGCCCaaacctaaccttaccctaaccaatCGCTAGCATGCCCAAACCTAACCTGTTGCGCTTGCATGTTGCGCAAATCACTCAATCTCAATCAATACAGGAAGAGTGTCTATGTTCTTGCCAGGGTCTGAGACTTGTCCTCCCTTATCCTCTCTGTACAACTTGTGCTCCCCTGAATATGACATCCAAACTAGTGACTTTCATTCTCCTGAATCCACACCTTTATCTTAAGTCCACTGTCTGTTCATTGATGATTGATTACATTGATGAGACATTGTTATTATTtgacatatttctgtatttctatAAATGCTGGCGTTGATGAATTATCAGCCATCTCACGATGACGTCCTCTCTCTATCGATCACACACTATCAGCACAAATAGaaacctcttctctcctccactccacaaTGAGACGCGAAGCCAAATCCAATCTGGGTTTAATGTCGTCTGGGGACCGAACATCCTGACTCCCCTCAGCTCGCTGGGACTGAACTGTCTTCCGTAAGAGATATATTGGTTTGTAACAGTTTCCTCAGGGAGTTGTTTTGGTACTGAACACTTTCTTCAGTGAGACATGTTCCATGCTGAACACTTTCTTCAGTAAGAAATGATGTTTTTGGTGATGAAGGTTCCTCTGTAAGATGATTCAGTACTGACCAGTTTCCCCACGAACAGATTCTGTTTCAGTACTGACCAGTTTCCCCACGAACAGATTCTGTTTCAGTACTGACCAGTTTCCCCACGAACAGATTCTGTTTCAGTACTGACCAGTTTCCCCACGAACAGATTCTGTTTCAGTACTGACCAGTTACTCCAGTAACAGATTCTGTTTTGGTGCTGACCAGTTTCTATCAGGTCCTGAACACCTCCCTTTATTAAGGGAGGTCCATTTGAATATTCTTCAGATGTCCGTTCAGGTCAATAAACCACGACAGGTTAATCGTTTCCTCAGTGAGAGTGGTTGGTTGGGTCCTGTTATTGCTGCTCGTTTTCATCAGAGATCACCAGCTATCACGCTCCTCCCGTCCCAAGTTCCTCTTCTGTCTGTTTCTGCTGATTTGGATGTAAAATCCAATTCGGCTTCATGGTCCACACTCCACAATGTTCTTTACGGATCAACACACAGAGactggcagagacacacacacagactggcagagacacacacagactggcagagagacagaccgacagagtgAATAACGTGGCGATCCTTCCAACAGTCTCTCATGGTGACAACACTCCTCGTGGTGAATCTGATTCTCAGCTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1743008 False 1485 lncRNA 0.45 1 17670456 17671940
TU1743009 True 1441 lncRNA 0.45 1 17670500 17671940

Neighbor

gene id symbol gene type direction distance location
LOC110527382 LOC106575451 coding upstream 29666 17638633 ~ 17640790 (+)
LOC110527377 LOC100136320 coding upstream 33872 17631679 ~ 17636584 (+)
LOC110527374 LOC106592210 coding upstream 39324 17623786 ~ 17631132 (+)
LOC110527370 LOC106575456 coding upstream 50021 17611532 ~ 17620435 (+)
mrps9 LOC106574616 coding upstream 59581 17592445 ~ 17610875 (+)
LOC118936563 LOC106591654 coding downstream 33438 17705378 ~ 17715036 (+)
LOC110519433 NA coding downstream 43097 17715037 ~ 17716919 (+)
LOC110528768 LOC106591671 coding downstream 159510 17831450 ~ 17839017 (+)
LOC110527394 LOC106591034 coding downstream 370793 18042733 ~ 18053825 (+)
LOC110528909 LOC106595470 coding downstream 385762 18057702 ~ 18075184 (+)
G1522372 NA non-coding upstream 25717 17642830 ~ 17644739 (+)
G1522368 NA non-coding upstream 32283 17637971 ~ 17638173 (+)
G1522364 NA non-coding upstream 48646 17621611 ~ 17621810 (+)
G1522348 LOC106575485 non-coding downstream 3270 17675210 ~ 17684532 (+)
G1522396 NA non-coding downstream 45757 17717697 ~ 17718046 (+)
G1522401 LOC106591655 non-coding downstream 52175 17724115 ~ 17733070 (+)
G1522410 LOC100194703 non-coding downstream 75505 17747445 ~ 17747757 (+)
LOC110495674 LOC106575504 other upstream 1202033 16454118 ~ 16468453 (+)
G1520748 NA other upstream 1731638 15938230 ~ 15938818 (+)
G1520742 NA other upstream 1747557 15919157 ~ 15922899 (+)
LOC110495644 LOC106575583 other upstream 1870575 15796262 ~ 15801788 (+)
G1522415 LOC106575491 other downstream 94279 17766219 ~ 17766694 (+)
G1522437 LOC106575479 other downstream 167729 17839669 ~ 17844014 (+)
G1522438 NA other downstream 184201 17856141 ~ 17860614 (+)
G1522684 NA other downstream 707147 18379087 ~ 18380258 (+)
LOC110495728 LOC106574584 other downstream 922394 18594324 ~ 18595682 (+)

Expression


Co-expression Network