G1522460


Basic Information

Item Value
gene id G1522460
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17860808 ~ 17861920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1743102
CCTACCCTATCCTTATCCCACCCTACCCTATTCTACCCTATCCTATCCTTATCCAACCCTATCCTTACCTTATCCAACCCTATCCTACCCTATCCTATCCTTACCTTATCCAACCCTATCCTTACCCTATCCGACCCTATCCTATCCTTACCTTATCCAACCCTACCCTATCCTACCCTATCCTGTACCTCCCAACAAATCTGCTCCCAAGAGAGTTTCCCCAACAACACAAGTTCAGGCGCCCTCCCCCCTCCACACGCACGCTATCATCTATAGAAAAAGAGCCTGATTCTTGCAGAGGATAGGCGTGCACATGGGCGTGCACCCTACCCACGCAGACATGATGCTATAAAACGGAtgataagcacacacacacacacaccacacacacacacacacacacacacacacacacagcagaggccTTATATCTATCTAAAGGTCCTTCTATGATAAAATAGCGTTCAGATGAGATGTAGCCTACTACGTGATGATATCAGGCAGATTTCAACATTTACTCTAGCTGTTGATAAACAAATACCTTTATGTCGGGTAATGTAATAACCAAATCgtatcttcctctcctctctctctcctggtgtctACTGCAGCTACAACCGGGATGCGAGCTCCCACCCCCAACGCAGGTGTGACTCAAGAATTAAACATTTTATCATCAAACAACTGCGCGATCAACTGCAGGACACACATACATACCGCGGGTCAAATACGCCattttcacacacacataaaccatgacgacacagacagggagagtgagagtgggacagggatggagagaaaggatgAGAAACAAATTCACTTACGTATTCTACCGTGACCCTGGCAGATTAGAGGATGATCGCCGTCCCCCGGAAAGGCTCGAGCTCCATGTCGGCTGctgttgcagtctctctctctcctctctcgctcgccctttctcgctctctctgcctctctctcctctctctttctcttccctctctctcttctccttttctctcttcagCAGCAGTAGCATCTCGCGCATCACCAGGAGGCGGTGGGAGGCGAG
>TU1743103
ATGATAAAATAGCGTTCAGATGAGATGTAGCCTACTACGTGATGATATCAGGCAGATTTCAACATTTACTCTAGCTGTTGATAAACAAATACCTTTATGTCGGGTAATGTAATAACCAAATCgtatcttcctctcctctctctctcctggtgtctACTGCAGCTACAACCGGGATGCGAGCTCCCACCCCCAACGCAGGTGTGACTCAAGAATTAAACATTTTATCATCAAACAACTGCGCGATCAACTGCAGGACACACATACATACCGCGGGTCAAATACGCCattttcacacacacataaaccatgacgacacagacagggagagtgagagtgggacagggatggagagaaaggatgAGAAACAAATTCACTTACGTATTCTACCGTGACCCTGGCAGATTAGAGGATGATCGCCGTCCCCCGGAAAGGCTCGAGCTCCATGTCGGCTGctgttgcagtctctctctctcctctctcgctcgccctttctcgctctctctgcctctctctcctctctctttctcttccctctctctcttctccttttctctcttcagCAGCAGTAGCATCTCGCGCATCACCAGGAGGCGGTGGGAGGCGAGAGCCTTTTAAATCATTCAGAAGCCTGCTTACACCACGTGACCAGTAATCTATTATTTAG
>TU1743104
ATGATAAAATAGCGTTCAGATGAGATGTAGCCTACTACGTGATGATATCAGGCAGATTTCAACATTTACTCTAGCTGTTGATAAACAAATACCTTTATGTCGGGTAATGTAATAACCAAATCgtatcttcctctcctctctctctcctggtgtctACTGCAGCTACAACCGGGATGCGAGCTCCCACCCCCAACGCAGGTGTGACTCAAGAATTAAACATTTTATCATCAAACAACTGCGCGATCAACTGCAGGACACACATACATACCGCGGGTCAAATACGCCattttcacacacacataaaccatgacgacacagacagggagagtgagagtgggacagggatggagagaaaggatgAGAAACAAATTCACTTACGTATTCTACCGTGACCCTGGCAGATTAGAGGATGATCGCCGTCCCCCGGAAAGGCTCGAGCTCCATGTCGGCTGctgttgcagtctctctctctcctctctcgctcgccctttctcgctctctctgcctctctctcctctctctttctcttccctctctctcttctccttttctctcttcagCAGCAGTAGCATCTCGCGCATCACCAGGAGGCGGTGGGAGGCGAG
>TU1743106
CGTATTCTACCGTGACCCTGGCAGATTAGAGGATGATCGCCGTCCCCCGGAAAGGCTCGAGCTCCATGTCGGCTGctgttgcagtctctctctctcctctctcgctcgccctttctcgctctctctgcctctctctcctctctctttctcttccctctctctcttctccttttctctcttcagCAGCAGTAGCATCTCGCGCATCACCAGGAGGCGGTGGGAGGCGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1743102 False 1054 lncRNA 0.49 1 17860808 17861861
TU1743103 False 664 lncRNA 0.48 1 17861257 17861920
TU1743104 False 605 lncRNA 0.49 1 17861257 17861861
TU1743106 True 228 lncRNA 0.58 1 17861634 17861861

Neighbor

gene id symbol gene type direction distance location
LOC110528768 LOC106591671 coding upstream 21791 17831450 ~ 17839017 (+)
LOC110519433 NA coding upstream 143889 17715037 ~ 17716919 (+)
LOC118936563 LOC106591654 coding upstream 145772 17705378 ~ 17715036 (+)
LOC110527382 LOC106575451 coding upstream 220018 17638633 ~ 17640790 (+)
LOC110527377 LOC100136320 coding upstream 224224 17631679 ~ 17636584 (+)
LOC110527394 LOC106591034 coding downstream 180813 18042733 ~ 18053825 (+)
LOC110528909 LOC106595470 coding downstream 195782 18057702 ~ 18075184 (+)
LOC110495693 LOC105019803 coding downstream 214280 18076200 ~ 18093990 (+)
atr atr coding downstream 235643 18097563 ~ 18129363 (+)
LOC110495694 LOC106575448 coding downstream 269186 18129571 ~ 18136939 (+)
G1522439 NA non-coding upstream 4745 17855434 ~ 17856063 (+)
G1522459 NA non-coding upstream 5436 17855052 ~ 17855372 (+)
G1522458 NA non-coding upstream 6212 17854316 ~ 17854596 (+)
G1522457 LOC107687231 non-coding upstream 7555 17852865 ~ 17853253 (+)
G1522452 LOC106591672 non-coding upstream 12429 17847715 ~ 17848379 (+)
G1522468 NA non-coding downstream 7082 17869002 ~ 17869222 (+)
G1522472 NA non-coding downstream 15457 17877377 ~ 17877611 (+)
G1522473 NA non-coding downstream 18542 17880462 ~ 17880809 (+)
G1522477 NA non-coding downstream 23755 17885675 ~ 17889208 (+)
G1522498 LOC106575464 non-coding downstream 58164 17920084 ~ 17921093 (+)
G1522438 NA other upstream 194 17856141 ~ 17860614 (+)
G1522437 LOC106575479 other upstream 16794 17839669 ~ 17844014 (+)
G1522415 LOC106575491 other upstream 94114 17766219 ~ 17766694 (+)
LOC110527374 LOC106592210 other upstream 233164 17623786 ~ 17631132 (+)
LOC110495674 LOC106575504 other upstream 1392385 16454118 ~ 16468453 (+)
G1522684 NA other downstream 517167 18379087 ~ 18380258 (+)
LOC110495728 LOC106574584 other downstream 732414 18594324 ~ 18595682 (+)
LOC118936474 LOC106574488 other downstream 853942 18702289 ~ 18722091 (+)
LOC110495746 LOC106574508 other downstream 1097524 18959384 ~ 18978475 (+)
G1523506 NA other downstream 1160085 19022005 ~ 19022395 (+)

Expression


Co-expression Network