G1522477


Basic Information

Item Value
gene id G1522477
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17885675 ~ 17889208 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1743128
ctataacactctataacactctcAACACTATatactataacactctatacactataccactctatacactataccactctatacactataacactctctACACAataacactctataacactctatacactgtaacactctataacactctataacaccCTAtaactctataacactctatacactataccaCTCTATACCACTCtctaaactataacactataactctataacactctatacactctatacactataacactctataacactctctacactataacactctataacactctatacactataacactctatgcactataacactctataacactctctacactataac
>TU1743129
actctatacactataacagtccatacactataacactctatacactataacactctatacattataacactctctacactataacactctataacactctatacactataacactctacactctatactctataacaATCTATAACTCTATAACACTCTCTACAATATAACACTCTATaactctataacactctatactctataacactctataacactctataacactcCATACACAATACACTGTAACACtcaatacactataacactctataacactctctacactataacactctatgcactataacactctataacactctctacactataacactctataacactctatacactataacactctatgcACTATAACactctctacactataacactctataacactctatacactataacactctataaaactctatacactataacactctataactctaacactctatacactataacactctataacactctcaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1743128 False 358 lncRNA 0.32 4 17885675 17889208
TU1743129 True 505 lncRNA 0.31 2 17886935 17887769

Neighbor

gene id symbol gene type direction distance location
LOC110528768 LOC106591671 coding upstream 46658 17831450 ~ 17839017 (+)
LOC110519433 NA coding upstream 168756 17715037 ~ 17716919 (+)
LOC118936563 LOC106591654 coding upstream 170639 17705378 ~ 17715036 (+)
LOC110527382 LOC106575451 coding upstream 244885 17638633 ~ 17640790 (+)
LOC110527377 LOC100136320 coding upstream 249091 17631679 ~ 17636584 (+)
LOC110527394 LOC106591034 coding downstream 153525 18042733 ~ 18053825 (+)
LOC110528909 LOC106595470 coding downstream 168494 18057702 ~ 18075184 (+)
LOC110495693 LOC105019803 coding downstream 186992 18076200 ~ 18093990 (+)
atr atr coding downstream 208355 18097563 ~ 18129363 (+)
LOC110495694 LOC106575448 coding downstream 241898 18129571 ~ 18136939 (+)
G1522473 NA non-coding upstream 4866 17880462 ~ 17880809 (+)
G1522472 NA non-coding upstream 8064 17877377 ~ 17877611 (+)
G1522468 NA non-coding upstream 16453 17869002 ~ 17869222 (+)
G1522460 NA non-coding upstream 23755 17860808 ~ 17861920 (+)
G1522439 NA non-coding upstream 29612 17855434 ~ 17856063 (+)
G1522498 LOC106575464 non-coding downstream 30876 17920084 ~ 17921093 (+)
G1522466 LOC100534484 non-coding downstream 32772 17921980 ~ 17933281 (+)
G1522487 NA non-coding downstream 49270 17938478 ~ 17940711 (+)
G1522544 NA non-coding downstream 132850 18022058 ~ 18022281 (+)
G1522438 NA other upstream 25061 17856141 ~ 17860614 (+)
G1522437 LOC106575479 other upstream 41661 17839669 ~ 17844014 (+)
G1522415 LOC106575491 other upstream 118981 17766219 ~ 17766694 (+)
LOC110527374 LOC106592210 other upstream 258031 17623786 ~ 17631132 (+)
LOC110495674 LOC106575504 other upstream 1417252 16454118 ~ 16468453 (+)
G1522684 NA other downstream 489879 18379087 ~ 18380258 (+)
LOC110495728 LOC106574584 other downstream 705126 18594324 ~ 18595682 (+)
LOC118936474 LOC106574488 other downstream 826654 18702289 ~ 18722091 (+)
LOC110495746 LOC106574508 other downstream 1070236 18959384 ~ 18978475 (+)
G1523506 NA other downstream 1132797 19022005 ~ 19022395 (+)

Expression


Co-expression Network