XLOC_003457 (shisa4)


Basic Information

Item Value
gene id XLOC_003457
gene name shisa4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24877820 ~ 24888595 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006768
ACTACATATTCGGCGTGCGGGCGTGTAGCGTCACGGGCGGCGTGTCATCCACCACAGATCGCATGTTGATCACGAAGCCGCCTGACTGCGAGACGTGGCTCATCTTGTCTTTTAAAGCGCCTTTCAAATAATGCAAATGTAACCATCTTTGTCGGGAATAACGGAAAGTGTTCTGGAAGCAGGATGTCCTTCTACGCTGTCATTATACCGGTTCTCTGTATCATTTTTTCGGCTTGGCAGGTGAGTGCAAATGAGGATTGCTTGTGGTACGTAGACAAAAATGGAACCTGGCACAATGGCTTCGACTGCCCACTCATAACCTTCTGCTGTGGGAACTGTCACCGCCGCTACTGCTGTCTCGATGGCTTCAAGATGATCACAGAAGCGGGACAGAAGCGCTGCATGCTCTTCCATCTCAGCCCATCTACTATAGCTGGCATTGCTTCATCGATCCTGCTCTTTGTGGCTGCAATTGCAACTATGGTCTGTTGCTTCATGTGTTCCTGTTGTTATCTTTACCAGCGACGCCAGCAGCGGGGCAGAACTCCTTATGAAGCCCAGCACATTCCAATGGCCAGCTATCCAGTGGAGCACATGTATGACGCTTATGGTAAACCAATTGGTCATCCGGAATATCCTGGATATCCAATGGTGCCTCAGTATCTGATGATGCCCCAGGGTCCTTACCCTCCTCATCCTCCTGATCCAGGATTCAGTCAAGCAGCTCCTCCACCGTACTCTCCTCCCCAGTACCCTGGGCACTGAAAGAGCTGAAGCCCTCCCTCTGCGAGGAGAAGATAACCTGTACAATGGGTAATGAAGAGGGCCCATGCTTGTTTGGAATCCCTTGTATGAGAATCCGTATAAAAAAGTTGagttatgttatttatttcttaatttaaattaatttgtggAGTGAAGCATGAACTGACCTCGGAATCGCCTCACACGTCGGAGTATTTTCTTGTTTGATGTCTCCTTCCACTTAAACCCAGCAACTCACACACTCAAAAGACTGCTATAGATGTGCCATTATGCTTTTGTCAAACTCTCCAACAAATGGTCCATTAGATATGGCTGTCCTGCAGAAGAGAATTGCTGACAGTTTTGACTCGCCCAGgatgttgttttctgttcaacCAAATAAGAAGCATTTGTCATTCGCACTTTAAGCTGCAATAGACATGCTTAGCTGTCTCTCCCTGCTCGTTTCTTCGAAATGCATTTATTTCTGCATGTCATGTGCATCATAAACATCCGTAGGCTTTAGATGTTTTACAGACATGCTGACATGAGACAGGTATTTTATAGACAGTTCACATGCAGTATGTAAATAAGAGAGAATATAAGAAATGTTAGTGTCGCATAGCATCTTCACAACCAACTGAAACGTCATTGTGTGCGTTTGAAGTTTGTCATTTGTCGTTAGATCAGGCTTCAATTTAAGCCGTGATGTTAACATTCGTTAGATCTGCATGTCTTTAATTGTAACTCAAGCTACCTATAGGCCAGCTATCGAGGAGATCACTGTAATGTTTGCATCCTGTTAGCTGTCTATCTGTTCTTATTCATTTCAAAAAGATCGTTTTCAATCCgtaaaacattatattatattgttactttttaaaaacagtgtCATTtaagcaaagtccctttaagctatgttaATTTCCGCATATTTGTCatcatatttcacccaaaaatgaaaatttgctgttttattagtttactttaaaaagttaaatactcAAGCATTTATAAGAAGATTTTAAGCTGAAATTGAAGCATTTAGTGGATCAAAAATTGCAAGTCAACAGCTATATCAGCTTTTTTGAGAGTCAAAAAGCCATTCAATTTAGTTTTTCCAATGTATACTTTTTACTCTTAAAATGCCGGAAGATTTTGACTTGCATCTTATAAATCACTAATGCCTAGTTTtaggtatttattttatttaatatggtCACcaaggtttcccagagatgggttgctgctggatgggcatccgctgcgtaaaaacgagctgggtaagttggtgattcattccgttgtggcgtttccggattaataaagggactaagccaacaagaaaattaatgaataaatgaatgaatgaatggtcactgagagagcttaacatgctgcaatttaagaaaacatgcaattacaaaaaaacgccagcagatgaagaaaagatcttcatccatttaacagcacacatgctgcaaatccccacaacataaacaaattacaaaaacgtgctgcattttctcacaacaatttcaaaaagaaCTAAACTcagcagaaatgtttcaaggggacccaaaaaggATAACGATAATGGcaggacatttttaaaagaaatctctggtttaaatgtttgaattaagtttattttacctggatatctaaacacatgtttataaacaaaatgagtatgacatgtcttactaaagagcgattttatagacagtttacatttttttgtgtacATGTATGCATCAAAGAATATATATTTCTTGCTACTGTATACCTTGTTTAGCCTTCAGATCacttaaaataagttttgaaaTCACTTTGAAAAAACGTCATTACAAATGTTATCAGCGCTTATTGACAGCAGCTGTTATGGTTGCCTGGTGACGAGATctgtcctctgtaggctagatcAGCTCATTTCAAAACGTTCGGTTCAGCctgtgtggacttcgaaggactCACTTTGGAagtgcagcctctgaaatgagacaaaGCTTATTGCTTAGTGAAGTTGTAgttgatctttgaaaggtgagtatatacttttgagtgtgtgacagaagagtatgcaagctttgggacctACTACTTCCTTGTTAACAGAtagttatgttgcttagttacgagCCCtatcaatcatccacacatcatccacatttctgtcatactTAATTTCCTTCcatattggagaagcagcagcacaATAATCTCCCATTTAAAAGTCTTTCATGCTGAGAAatgtcctcaggtctttggataattctgCATTCAGACGTTAATGTTCAAAGTACACATCTTTATACAatttcagtattgttgttgcagattaaatttaacacagaaaatgtgatttagatattttccagtgggctaaatattaataaacagtcatacaaacatctttaccgaagcttCTCCATTTGATTTCTCTACTTGGTTGGTTTTCGCGCATCCATCatgtttgcagttttttttacacttttcacccacgtttgtagttctaatgtactgtgggcaatatcagcggttagagtatgAAAGCTTCTTTACTTAAAATTTTTACCAGAAATATTAAACCACCCTGgtacctttggcatactcttttcaacatactacgatttgggacacactaattctattttcaaatactattaaggcgaattgggacacagcacataacctaaatagccaggTCTGTCACcctttttgggtccccttgaattATTTCCGCTATGTTCCATCCTATTTTAagatgttgtgagaaaatgcagcgcgatatcataaattgtttgcattgtgagaaaatacagtgtgtttcattaatttgtttgcgttgtaagcAAATGCAGCATTGCAGCTTGtatgctgtcaaacagatgaagatcttgtctcaatttgctggcgttttttttttttttgtaattgcacactttattaaattgcagcatgttaagctctctcggccaccataaCCAAATGTTCTTTTGAAGAGAATGTAATCACAGATGACctgaaagtgagtaaatgaaaagcaaattacatttttggagTTAAATCTACAAACGTGAGTCAAATCTTTAActtcaagacaaaaacaaaaatctggCACTTTTCTTTGTCTATTTAAACTACAAATATGTGGTAATTTACCAGCACACAACATGTTTTCCCAGttgaaatacagtaattaaagtTGAGTACCTTAATTGGGAATTTTGCAAGGAACATTTTCCTGTTacaattttttattgttatgcGACTTAAGATGGCACTTTTATTGCCTGCCAAATTTAGTGTTTTTCAATTAACACAAGCATCATTGTATTGTCTCTGCCTTATTTTCAAAGTTTATCATCAATTACATTTCGTCCAGTGGTCAGTTAGAATGTATTTAAAAAGAATTAGAAACTATCTCATTAGAAAAATTTTGTTCAAAATGATTCATCAGGTACATATGAGGTgcaatttgttttgattttaaatgatttgtgcTTCCTCCTCATTTCACATTAGTTGTGATGCTTTGTCCACTGTTTAAATAACCTGCTAgttatttaaatgaatgtaaaattaaCAGTGTTGTTTTTTGCTATATACAGCATATGCTACAGTTTTGTCACTTTGAAATGTGAAGTACAAACAAAGAGGAATTTTTACAATGTGGAATATTAACATGTATTTCAAGAGGAAAAAAGGGAATTAATAGGCTACTAGTGTTTGAACTTGCACTAATCAATCCTATAAAAGAGCACTAATTGAACAGACTGGAAAAGGAGTATTGCGTAAATctctttttacaataaaaaaagttttgactttgca
>TCONS_00006769
gaaataaaaaaatgtaaaaacgtatttaaattgaattaaaatttaCCTTTTCCCTCAAATTTATTGTTAACATGCTGCTGAACTGAGTCTCTGATCATCTCTGGATCATCTTACTTATTAATTTCATAGAGAGATTTAAGATGCTGAAAACACCACAAGCATCACACccctgatatgtGTGTAGTAAATGAAACCATGTTATTCACTGAACACTTATTGTAAACAAATGTATGAAAGACTAACATGAGTCTGGATTTCAGCCCAGCACATTCCAATGGCCAGCTATCCAGTGGAGCACATGTATGACGCTTATGGTAAACCAATTGGTCATCCGGAATATCCTGGATATCCAATGGTGCCTCAGTATCTGATGATGCCCCAGGGTCCTTACCCTCCTCATCCTCCTGATCCAGGATTCAGTCAAGCAGGTACGCAGATGGCCTAGAAACCAGAGATCACACACTGTAGTGGACTTAAAAAAACGCAGTTGCAATAATATAACACAGAATTAAGCCGCTTTTCCTCTGTTGTGTCAAACCATCCTAAGAACATTCAGGTACGGTTTCAGTTCTATTTCCTCTGCAAGCCTGGTGTAGCACGGGATGGCACTCTAGACAACTGTGCAAAACCATGCTGGACTGGTAGCGGTGCGCATAACATTGTCACTCTATTGCCTGGCTGCCTGTTTCTCCATAGGCAGACACAtgctaataattaataaaacttttgttgttcaacaaataaatataaagataaaagaaaa

Function

symbol description
shisa4 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SHISA4 (shisa family member 4).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-419 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SHISA4 (shisa family member 4).

Ensembl:

ensembl_id ENSDARG00000006307

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006768 False 4581 mRNA 0.37 5 24877820 24888595
TCONS_00006769 True 763 processed_transcript 0.40 2 24881309 24883345

Neighbor

gene id symbol gene type direction distance location
XLOC_003456 ipo9 coding upstream 1199 24851671 ~ 24876621 (+)
XLOC_003455 kdm5ba coding upstream 26356 24819324 ~ 24851464 (+)
XLOC_003454 rabif coding upstream 60183 24815667 ~ 24817637 (+)
XLOC_003453 adipor1a coding upstream 62627 24800156 ~ 24815193 (+)
XLOC_003452 cyb5r1 coding upstream 78145 24786378 ~ 24799675 (+)
XLOC_003458 lmod1b coding downstream 575 24889170 ~ 24894907 (+)
XLOC_003459 timm17a coding downstream 11528 24900123 ~ 24906264 (+)
XLOC_003460 sulf2a coding downstream 18874 24907469 ~ 24993225 (+)
XLOC_003461 zgc:92107 coding downstream 106110 24994705 ~ 25043214 (+)
XLOC_003462 phf20a coding downstream 155487 25044082 ~ 25063586 (+)
XLOC_003369 CR854846.2 misc upstream 8754738 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 12165824 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 12183557 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 12192221 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 12197792 12679732 ~ 12680028 (+)
XLOC_003447 BX072564.1 non-coding upstream 296706 24580579 ~ 24581114 (+)
XLOC_003442 NA non-coding upstream 567175 24120291 ~ 24310645 (+)
XLOC_003444 AL831791.1 non-coding upstream 698882 24178823 ~ 24178938 (+)
XLOC_003443 NA non-coding upstream 700169 24176418 ~ 24177651 (+)
XLOC_003441 FP102969.1 non-coding upstream 726603 24116083 ~ 24151217 (+)
XLOC_003463 NA non-coding downstream 170867 25059462 ~ 25060098 (+)
XLOC_003466 NA non-coding downstream 293262 25181857 ~ 25228195 (+)
XLOC_003467 NA non-coding downstream 368217 25256812 ~ 25266235 (+)
XLOC_003487 NA non-coding downstream 940775 25829370 ~ 25830337 (+)
XLOC_003488 CR318604.1 non-coding downstream 1189352 26077947 ~ 26078061 (+)

Expression


Co-expression Network