XLOC_003458 (lmod1b)


Basic Information

Item Value
gene id XLOC_003458
gene name lmod1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24889170 ~ 24894907 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006770
CCGAGCACCACAAACCAGGGCTGATAGTCCATCGCCCTGCTCCTCGAGTTTCTTTCAACATCCAGAAAGGCTTCAATTTGACTCCTTTTTGTCCTCCATCTACTATTTCTATTATATTCACATTTGACTGGTAAAGTAAGTCAAAAACGCACGGATAACGTTATCTTCAGCATATTCTTCTGAAATCTGCGTTAATACTGACAGCGACCATGTCCAGGAGGAAAGTGAAGGGACTCACTAAAACCGGCAGACAGGTGAGTGAGGACCCGGAACTCGACAGTTTACTGTCAAACCTGTCGACTGCAGAAATGGAAGAGTTGGAGAAAGAGGTGTCGGTTGTTCCCGATCCAGATCCGAGTGAAATTATCGTTGTGGACCAAACGGATTTAAAACCAAGCGCTCCGGTTAGAAAGGAATCGCAACTGAGCAGCCAGACCGACGACTTCAAATCCCGCTTCCAGAGAAACCTGTCAACTGAGGTAGAGCCGAAGAAGGAGAGCCGGAAGCAAGAGTATCTGCGTAAAATGGGCCTGAGCCAAGAGAAAAATATCTCTGCGTCTGACAGCAGAGATGGAGGACTTCAGAGGACGTCCTCcacctcttccttccctaaacgtGATAGTAGATTGGAGGACAGGACCCGCAGAGTCACAGAAGGCACCAGAGATGAAAAATTCGGCCCATCTGCTGTTTCCAAGAGAGACGAGGagattgagaaaaaaaatgagaCAAAGGACCAAAACGATGGGAGTAGATTAAGAGACAGAAGAGAGATGAGAGAAAGTAGCAGCAGCAAAACCAAAGAATTAATTTCCAAGCTTCAAGAGAAGAAGGAGGATagtaaagagaaaaataaaaaagaagacagAGGGAAGAGGGAATCTGGAGAAAGTAGAGCAAAGGAGATGATTTCTAGGATACAAGAGAAAGAGGAGAAGGAACGGGAGAAAAAGGAAGAGATTAGAAAGAGAGAGGAGACTAAGAGTAAAGGCTATATATCCAGGTTAGAGGAGAATCAAAATCAGGTTCATGAAGACAAGACGAAAGAAGAGAATAAGCACAGGGATGAAAAACAAATAAGGTCAAGCGAAAAGGTAAAAGAGACTACTGCATTGTctgaaaataaagagaaagaatctgaAAATGTGAAAAGGCTTCAGGAATGCAATGCAAAATCAAGTGACAAAGGAAGAGGGGATGTTCAGAAAcacaatgaaaatgtaaatgaagtTCATAAACCAAAAGAAGAGAAAATTGAAAACTGTGTCTCGGACACTATTTTGAAAGGTAAGACCAAAGAGGAGGAAGAAGATGACGAGTCAGCCAGCATGTTTGATGAAGATCTGGAGAAAGTTCGTCGTAATGACCCAGGCATGACTGATCTCAACGTGAACAATTCTGAGGTCATAAAAACCAAAACTCTTATTCAGTTCTCTGAGGCATTGAAAAACAACACGCACATCAAAGCATTTTCTTTGGCAAACTGTCGCGCTGATGACCATGTGGCTTACGCTATTGCTGACACCTTACGCAACAACAAAAGCATCACTAGCATCAATCTGGACTCCAATCTTCTTACTAGCAAAGGCATCATGTCTCTGATTCAAGCCCTTCAACACAACTCCACACTCACTGAGCTACGTTTCCACAACCAGCGACACATTATCGGAGGAAAATCTGAGATGGAGATGACCAAAATTTTGAAAGAAAATACCACTCTACTAAAACTAGGTTATCACTTTGAGTTAGCTGGACCTCGTATGACCATGACCAATATTCTTAGTCGGAATATGGACCGTCAGCGGCAAAAACGGCTCCAAGAGCAGAAGCAAGCTCAAGCACAAGGAGCTGGAGACAAGAAAGATTCATTAGGAGTTCCAAAACCCAGCTTTGGTAAAGGCTCCCCCAGAGCATCACCAATACCTTCACCCATACCGTCACCTGCTCCGTCACCCAAGTTGACTCATAAGAAAAGGGTAAGTGGGCTTGTTGGTGGACCACCACCTCCTCCACCACCACCTGGAGGACCACCGCCACCTCCACCACCAATGCTAGACGGAGACTTTCTGAAGAACTCCTTAACGCCTGTGTCTCAGAGGAAGCTGGACGACAGGAGTGGAGGAAGAGGAGCAGCTCAAAACACACGGGACCAACTTCTAGCTTCCATTAGGAACAGCAATGTTAAGCAGCTCAAAAAGgTTGCAGTACCAAAGCTTTTGCAGTAAGTGCAAAGAGATAGATGTGGATAAAGAAAAAGCCAGGAATGAAAGGACAGACATCTCACAGACCTTGAGAAGATCATCGCTCAGAATCTTCCATACAGAGTCTTACTACAGTTAAGAGGACAGGCAAAgactggtatatatatatatatatatatggggatATTCACAGCTTCTGGCCAAGAGTCTTTGTACAAATACACTGGACGATAGGAAGACATGAAAGTGTGGCGCAGTCATGGGTGCTCAGAGGATCCGATGGCCTATGGGACTGCAGACGTGAGGCCTTGCTTGTCATTTGCACTAAATGAATAATTTCTAATGATAGatttatgaatgtgtgtttggtacagtgtgtgtgtggatgtttgtgtCTGAATTAGAATGGCATCTGAATTAAACAGCTGGATGTTATcctacattattaaaaatatcagTGAATTAACAGGTAACATgattttgtatttcattatgGGATCTGTAacttccaaca

Function

symbol description
lmod1b Predicted to enable actin binding activity and tropomyosin binding activity. Predicted to act upstream of or within muscle contraction and pointed-end actin filament capping. Orthologous to human LMOD1 (leiomodin 1).

GO:

id name namespace
GO:0051694 pointed-end actin filament capping biological_process
GO:0006936 muscle contraction biological_process
GO:0005523 tropomyosin binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141215-22 Predicted to enable actin binding activity and tropomyosin binding activity. Predicted to act upstream of or within muscle contraction and pointed-end actin filament capping. Orthologous to human LMOD1 (leiomodin 1).

Ensembl:

ensembl_id ENSDARG00000077261

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006770 True 2715 mRNA 0.43 3 24889170 24894907

Neighbor

gene id symbol gene type direction distance location
XLOC_003457 shisa4 coding upstream 575 24877820 ~ 24888595 (+)
XLOC_003456 ipo9 coding upstream 12549 24851671 ~ 24876621 (+)
XLOC_003455 kdm5ba coding upstream 37706 24819324 ~ 24851464 (+)
XLOC_003454 rabif coding upstream 71533 24815667 ~ 24817637 (+)
XLOC_003453 adipor1a coding upstream 73977 24800156 ~ 24815193 (+)
XLOC_003459 timm17a coding downstream 5216 24900123 ~ 24906264 (+)
XLOC_003460 sulf2a coding downstream 12562 24907469 ~ 24993225 (+)
XLOC_003461 zgc:92107 coding downstream 99798 24994705 ~ 25043214 (+)
XLOC_003462 phf20a coding downstream 149175 25044082 ~ 25063586 (+)
XLOC_003463 NA coding downstream 164555 25059462 ~ 25060098 (+)
XLOC_003369 CR854846.2 misc upstream 8766088 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 12177174 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 12194907 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 12203571 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 12209142 12679732 ~ 12680028 (+)
XLOC_003447 BX072564.1 non-coding upstream 308056 24580579 ~ 24581114 (+)
XLOC_003442 NA non-coding upstream 578525 24120291 ~ 24310645 (+)
XLOC_003444 AL831791.1 non-coding upstream 710232 24178823 ~ 24178938 (+)
XLOC_003443 NA non-coding upstream 711519 24176418 ~ 24177651 (+)
XLOC_003441 FP102969.1 non-coding upstream 737953 24116083 ~ 24151217 (+)
XLOC_003466 NA non-coding downstream 286950 25181857 ~ 25228195 (+)
XLOC_003467 NA non-coding downstream 361905 25256812 ~ 25266235 (+)
XLOC_003487 NA non-coding downstream 934463 25829370 ~ 25830337 (+)
XLOC_003488 CR318604.1 non-coding downstream 1183040 26077947 ~ 26078061 (+)

Expression


Co-expression Network