G1534021


Basic Information

Item Value
gene id G1534021
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 28219174 ~ 28226302 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1756049
tcgagagactgaaattttttcacattcctctttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggataattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactataaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctgtggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggccatttcaatattatcgcttgcaaagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgctggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagttttgaattgttaaaaaagtttgaaatatacaataaatg

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1756049 True 977 lncRNA 0.42 4 28219174 28226302

Neighbor

gene id symbol gene type direction distance location
LOC110495961 LOC106574325 coding downstream 19416 28124599 ~ 28199758 (-)
LOC110495955 LOC106574324 coding downstream 126978 27995381 ~ 28092196 (-)
LOC110495959 LOC106574321 coding downstream 223878 27985466 ~ 27995296 (-)
prkag3a LOC106575098 coding downstream 236469 27974808 ~ 27982705 (-)
LOC110495957 LOC106574318 coding downstream 244769 27948778 ~ 27974405 (-)
LOC110495963 LOC106574327 coding upstream 15192 28241494 ~ 28368147 (-)
LOC110495969 LOC106574334 coding upstream 446527 28672829 ~ 28675992 (-)
LOC110495970 app coding upstream 462820 28689122 ~ 28731312 (-)
LOC110495971 cyyr1 coding upstream 512716 28739018 ~ 28758685 (-)
LOC110495973 LOC106574336 coding upstream 534370 28760672 ~ 28768063 (-)
G1533860 NA non-coding downstream 273217 27945669 ~ 27945957 (-)
G1533845 NA non-coding downstream 292494 27926292 ~ 27926680 (-)
G1533783 NA non-coding downstream 386137 27830973 ~ 27833037 (-)
G1534036 NA non-coding upstream 14201 28240503 ~ 28240728 (-)
G1534150 NA non-coding upstream 118734 28345036 ~ 28345319 (-)
G1534174 NA non-coding upstream 143793 28370095 ~ 28370391 (-)
G1534184 NA non-coding upstream 151365 28377667 ~ 28378167 (-)
G1534193 NA non-coding upstream 158812 28385114 ~ 28385394 (-)
LOC110496785 LOC106574363 other downstream 304654 27839770 ~ 27914607 (-)
LOC110495948 LOC106574314 other downstream 420561 27754174 ~ 27798978 (-)
G1533378 NA other downstream 1029625 27187622 ~ 27189549 (-)
G1531236 NA other downstream 2510300 25696539 ~ 25708874 (-)
G1536703 NA other upstream 2058070 30284372 ~ 30284762 (-)
G1537022 NA other upstream 2293590 30519892 ~ 30525373 (-)
G1537091 NA other upstream 2376414 30602716 ~ 30603392 (-)
LOC110495992 LOC106588166 other upstream 2685525 30911827 ~ 30955199 (-)

Expression


Co-expression Network