G1538500


Basic Information

Item Value
gene id G1538500
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 31770226 ~ 31771332 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1760873
ttgcacactcttggcattctctcaaccagcttcatgaggtagtcacctggaatgcatttcaattaacaggcgtgccttgttaatttgtggaaccTTTTTTCCTTCTAAATTGgtgtttaagccaatcagttgtgttgtgacaaggtaggggtggtatacagaagatagccctatttggtaaaagaccaagtccatattatggcaagaacagctcaaataaacaaagagaaacgacagtccatcagtccaactttgaaagtttcaaaagctccaagtgcagtcacaaaaaccatcaagcgctatgttgaaactggctctcatgaggaccgccacaggaaaggaaaacccagagttacctctgctgcagatgataagttcattagagttaccagcctcagaaattgcagctcaaataaatgtttcacagagttcaagtaacagacacatctaaacatcaactgttcagaggaaactgcgttaatcaggccttcatggttgaattgctgcaaacaaaccactaataaaggacaccaataagaagaagagacttgcttgggccaagaaacacaagcaatggacattaaactggtggaaatctgtccttggtctgatgagttcaaatttgaaaTGATTGgatccaaccgccatgtctttgtgaaacgcagagtaggtgaatggatgatctccgcatgtgtggttcccaccgtgaagcatggaggaggaggtgtggtggtgtggagctgctttgctggtgacactgtgatttaattagaatttaatgcacacttaaccaccatggcttccacagcattctgcagcgatacaccatcccatcttgttttcacttagttggactatcatttgtttttcaacaggacaatgacccaacacacctccaggttgtgtaagggctatttgaccaagaagaagagtgatggagtgctgcatcagatgacctggcctccacaatcacctgacctcaacccaattgagatggtttgggatgagttggcccacagagtgaaggtaaagcagccaacaagtgctcagcatatgtgggaactcttcaggactgttggaaaatcattccaggtgaagctggttgag

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1760873 True 1107 lncRNA 0.44 1 31770226 31771332

Neighbor

gene id symbol gene type direction distance location
ash1l LOC106588182 coding downstream 1120 31722514 ~ 31769106 (-)
LOC100136047 LOC106605923 coding downstream 77493 31684840 ~ 31692733 (-)
LOC110496009 LOC106588178 coding downstream 115990 31628863 ~ 31654236 (-)
LOC110496005 s10a4 coding downstream 234850 31530404 ~ 31535376 (-)
LOC110496004 LOC106588173 coding downstream 245343 31492852 ~ 31524883 (-)
LOC110496013 LOC106588183 coding upstream 280 31771612 ~ 31777330 (-)
LOC110496014 LOC106588184 coding upstream 7932 31779264 ~ 31784592 (-)
LOC110496016 LOC106588185 coding upstream 25736 31797068 ~ 31802818 (-)
dnjc8 dnjc8 coding upstream 255225 32026557 ~ 32032535 (-)
LOC110496024 LOC106588192 coding upstream 265823 32037155 ~ 32056879 (-)
G1538602 NA non-coding downstream 28376 31741482 ~ 31741850 (-)
G1538596 NA non-coding downstream 54488 31715499 ~ 31715738 (-)
G1538561 NA non-coding downstream 111638 31657999 ~ 31658588 (-)
G1538610 NA non-coding upstream 5311 31776643 ~ 31875585 (-)
G1538691 NA non-coding upstream 135257 31906589 ~ 31917932 (-)
G1538735 NA non-coding upstream 192673 31964005 ~ 31964594 (-)
G1538744 NA non-coding upstream 208199 31979531 ~ 31979796 (-)
G1538745 NA non-coding upstream 209204 31980536 ~ 31981141 (-)
G1538595 NA other downstream 55045 31714506 ~ 31715181 (-)
LOC110495994 LOC106588168 other downstream 756050 31008756 ~ 31014201 (-)
LOC110495992 LOC106588166 other downstream 816918 30911827 ~ 30955199 (-)
atp5if1a LOC106588193 other upstream 285979 32057280 ~ 32058819 (-)
G1539348 NA other upstream 790394 32561726 ~ 32562120 (-)
G1540148 NA other upstream 1128246 32899578 ~ 32936569 (-)
G1540473 LOC106581475 other upstream 1620007 33391339 ~ 33391752 (-)
LOC110496048 LOC106588215 other upstream 1831142 33602474 ~ 33610948 (-)

Expression


Co-expression Network