XLOC_003468 (cyldb)


Basic Information

Item Value
gene id XLOC_003468
gene name cyldb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25276748 ~ 25291709 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006799
CTGATCTCCCGGCCGCTCTGTGTTCATCAAACACTCTCCATTCAACATGGAGCTCAACGAGCAGCGGTACTTCATCGTCCTGAGGAGAAACAAGAAAGGCCTGTCCCGCGGGACTATCGGGCGAGCAGAAGGGGAGACAGCAGAAGAAGAGCTGATTGGGATGGTTTGTGAAGGAGGAGGTAGCATCAGGAGCAGCAGGACGGTAAAGAAACACGACACTTACCCGCTGTCGAGGCACCAGGCTGGACTGCTGATGTTGGTGTGTCCCGCTAGCAGGAGGCTGGAGCTGCTGGGAAACCTCCAGCTGTTCTCCGCCATCTGTGAGCTGGCGCGGGATGATCTGGTGATGGTCAAACATAAGAAGATCTTTCAGCCGTGCTTGGTCAAGAATCTGGTTCAAATAGGCAAACAAGACAAACAGGGAGACTTGCAGGTGCTGGGCTTCGAGCTGGAGCTGGTGGAGACTGAGAATGAAATTTCTTTGAAGAAGACAGCTCCTCTGCCCTTTTTCAGTGCAGCTGATATTCTGCAAGTGGCTCCTTCTGATTTAAACACCAGGGTACCACTGAGAGATGCCATTGATTTAGGTTTGAAGAGGAAAGCAGTGTCCCTTCTCAATTCCTTGCCATCACTAAACTCACGCAATGCTAAAAAAGGAAGTGTCCTCTTCAAAAAGGATGTGTCCGAATCTATTCAGGCCTTGTCCCATTATTCTCTGGAGGTGGGTTCCATGGCAGAGGTTCTGTCTTTGAATGGACTGACCGTGTATGGGGTGATCAGATGGATTGGGGTTCCAGAAGGAAAGAAAAACTGCTGGGCAGGACTTGAACTGGACACAGAGGCGACGACTTGTTCAGATGGGACGTTGGGAACAAAGCGATATTTTACCTGTGAGGCAAATAAAGCCTTGtttgtgccattgaccaactgcAAACCAGACAGTAGATTTCTGTTAATTCCGGATGAGATGCTGAAACCACTCAACCCTCCTTCAGCCACACTTGTGGAGGATTTGGATGAAGACGTTCCACCTGTAGCTGAGCAAGATGTTTTGTCTCATCTGGTTGGCAGAATGAAGGGGATCCAAGGTCACTTCAACTCCTGCTATCTAGATGCCACTCTCTTTAGTCTCTTTACGTCATCCGTAGCTTTTGACAGAATTTTTAACAGATCAGCAGATAGCAAGAAAGGCATTTCTCACATTTTAAGACGGGACATCGTGAACTGTTTACGCAGATCAGGCTTTGTTCCAGCAGAGAATGTGATGAAGTTTCGTGAACAACTGGGCTGCAAATCTTTTGCTTCAGAAGAAAAAGATCCAGAGGAGTTCATCACTTTACTGctacagcatgttttacacatagAGCCTTTGCTCAAAATCAGgtCACAAGGAGAGTTTCCACAGGAAGCTTATACGCATCAGATCATTGTAGAGAAGAATCAGGTCGCAGCCGTGCCTTCAGTTCAACAGCTGCTTGAGATGTCTTTTGTAACAAGCAATCTAAAGTTTGAAGAGATTCCATCCTGCCTCATAGTTCAGATGCCACGTTTTGGAAAGAAGTTCAAGATGTTCCCTAAAATCATTCCCTCAACAGAGCTGGACATCACAGACGTATTGCATTGCTCTCCTCGGGAGTGTTTTCTGTGTGGTCATCTGGCTAAATATGAATGTGTGCAATGCCTGATGGACCGCAAGCTTCAGCCAGGCAAAATTAAGCAGTATTGCTCCACCTGCAACACACAGGTTCACAATCATCCCACCCGACAGGAACACACTCCTCAGAAACTCACACTTCCAGATTGTCCTGCAGAAGATGCACCTGTTCAAAGGCACCCGATGCAGCTCTTTGCAGTTCTGTGTATAAACACCAGCCATTATGTGTCTTTTGTCAAATACGGGCCTGATCCTCGATCCTGGATCTTTTTTGACAGCATGGCTGATCGATGCGGTGATGACAACAAGGGCTACAGCATTCCTGTGATCAGGTCTTGTCCTGAGGTTGGAGATTTTCTGTCGCAGTCTGAAGAGGAGATCAGCTCAGCCGATCTGAGTCAGTGCAGTGAGGCGGTGCGCCGACTGATGGTTGATTCATACATGTGTCTTTATCAGACAACAGACTGTCaacaataatcacacacacacacacttacacacacacacacacatttctgatGCCCATACTGTAACTCTTATGTCATTACATCATGAGGGCTGACACAAATGAAGGACTGCTCAGACACTCTGTTCTTATGATTTCTGATGGAAGTTTATGTCTGCTTGAAAGTGCCCTGATTTATACGGACATTAGGATCATAGGACGTTAGGGCATTTGATCAAGGACAAGTATGAGTTTGCACACAAGCAACATTTTCTCTATTTTGATATGAGAAACGTTCTAGTATATCATGTAAGGTTTTTGTaggattttttttgtcatttttattagattatttattttgtacattatcgtctattcaaattatatatattatattttattaaagttaaatCATCAT
>TCONS_00006800
GAGACTGAGAATGAAATTTCTTTGAAGAAGACAGCTCCTCTGCCCTTTTTCAGTGCAGCTGATATTCTGCAAGTGGCTCCTTCTGATTTAAACACCAGGGTACCACTGAGAGATGCCATTGATTTAGGTCAGTACCTTTTTTGCTCATATTCAAAAACCCAGAACagaaaatattaatctaaatCATTTACTCCCCCACTGTTAGTTGCAAACCTgttgagtttcttttttgttgaacaacaaatatattttgaagagtgttaaAAACCAGAATTGACTTTCATACATTTTTTCTATGAAAATCAAAGTTCTACGTGTccctacattcttcaaaatatctacttttgtgttcaacataataaAAGAAACTTGAGGGTAATTAAATgctatataaatgttcatttgtgtGGTAACTCTCACTTTAAGAGAGTGATTAAATGACTAGAACGCGGAAAAGATTCTTATCTTAAACTGGAAAGACCATGAGCTATCAGTCTCAACTTAACTGCAAACTTCCTAGCAATGAATTAAGGAAAGAACTCAAGTGGTTATTTATGATTGATGTGTTTTCCCCTTTTAGGTTTGAAGAGGAAAGCAGTGTCCCTTCTCAATTCCTTGCCATCACTAAACTCACGCAATGCTAAAAAAGGAAGTGTCCTCTTCAAAAAGGATGTGTCCGAATCTATTCAGGCCTTGTCCCATTATTCTCTGGAGGTGGGTTCCATGGCAGAGGTTCTGTCTTTGAATGGACTGACCGTGTATGGGGTGATCAGATGGATTGGGGTTCCAGAAGGAAAGAAAAACTGCTGGGCAGGACTTGAACTGGACACAGAGGCGACGACTTGTTCAGATGGGACGTTGGGAACAAAGCGATATTTTACCTGTGAGGCAAATAAAGCCTTGtttgtgccattgaccaactgcAAACCAGACAGTAGATTTCTGTTAATTCCGGATGAGATGCTGAAACCACTCAACCCTCCTTCAGCCACACTTGTGGAGGATTTGGATGAAGACGTTCCACCTGTAGCTGAGCAAGATGTTTTGTCTCATCTGGTTGGCAGAATGAAGGGGATCCAAGGTCACTTCAACTCCTGCTATCTAGATGCCACTCTCTTTAGTCTCTTTACGTCATCCGTAGCTTTTGACAGAATTTTTAACAGATCAGCAGATAGCAAGAAAGGCATTTCTCACATTTTAAGACGGGACATCGTGAACTGTTTACGCAGATCAGGCTTTGTTCCAGCAGAGAATGTGATGAAGTTTCGTGAACAACTGGGCTGCAAATCTTTTGCTTCAGAAGAAAAAGATCCAGAGGAGTTCATCACTTTACTGctacagcatgttttacacatagAGCCTTTGCTCAAAATCAGgtCACAAGGAGAGTTTCCACAGGAAGCTTATACGCATCAGATCATTGTAGAGAAGAATCAGGTCGCAGCCGTGCCTTCAGTTCAACAGCTGCTTGAGATGTCTTTTGTAACAAGCAATCTAAAGTTTGAAGAGATTCCATCCTGCCTCATAGTTCAGATGCCACGTTTTGGAAAGAAGTTCAAGATGTTCCCTAAAATCATTCCCTCAACAGAGCTGGACATCACAGACGTATTGCATTGCTCTCCTCGGGAGTGTTTTCTGTGTGGTCATCTGGCTAAATATGAATGTGTGCAATGCCTGATGGACCGCAAGCTTCAGCCAGGCAAAATTAAGCAGTATTGCTCCACCTGCAACACACAGGTTCACAATCATCCCACCCGACAGGAACACACTCCTCAGAAACTCACACTTCCAGATTGTCCTGCAGAAGATGCACCTGTTCAAAGGCACCCGATGCAGCTCTTTGCAGTTCTGTGTATAAACACCAGCCATTATGTGTCTTTTGTCAAATACGGGCCTGATCCTCGATCCTGGATCTTTTTTGACAGCATGGCTGATCGATGCGGTAAGATTTACAgtctttaa

Function

symbol description
cyldb Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within cranial skeletal system development. Predicted to be located in microtubule organizing center and perinuclear region of cytoplasm. Human ortholog(s) of this gene implicated in Brooke-Spiegler syndrome. Orthologous to human CYLD (CYLD lysine 63 deubiquitinase).

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:1904888 cranial skeletal system development biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100208-1 Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within cranial skeletal system development. Predicted to be located in microtubule organizing center and perinuclear region of cytoplasm. Human ortholog(s) of this gene implicated in Brooke-Spiegler syndrome. Orthologous to human CYLD (CYLD lysine 63 deubiquitinase).

Ensembl:

ensembl_id ENSDARG00000089724

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006799 False 2517 mRNA 0.45 13 25276748 25291709
TCONS_00006800 True 1962 mRNA 0.42 10 25278772 25289177

Neighbor

gene id symbol gene type direction distance location
XLOC_003467 NA coding upstream 10513 25256812 ~ 25266235 (+)
XLOC_003466 NA coding upstream 48553 25181857 ~ 25228195 (+)
XLOC_003465 trpc4apa coding upstream 96418 25157374 ~ 25180330 (+)
XLOC_003464 ndrg3a coding upstream 121745 25064519 ~ 25155003 (+)
XLOC_003462 phf20a coding upstream 213162 25044082 ~ 25063586 (+)
XLOC_003469 top1l coding downstream 4657 25296366 ~ 25311677 (+)
XLOC_003470 fam83d coding downstream 36490 25328199 ~ 25336921 (+)
XLOC_003471 si:dkeyp-97e7.9 coding downstream 97038 25388747 ~ 25397129 (+)
XLOC_003472 adnpa coding downstream 111852 25403561 ~ 25408636 (+)
XLOC_003473 si:dkey-13a21.4 coding downstream 139142 25430851 ~ 25435922 (+)
XLOC_003369 CR854846.2 misc upstream 9153666 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 12564752 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 12582485 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 12591149 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 12596720 12679732 ~ 12680028 (+)
XLOC_003463 NA non-coding upstream 216650 25059462 ~ 25060098 (+)
XLOC_003447 BX072564.1 non-coding upstream 695634 24580579 ~ 24581114 (+)
XLOC_003444 AL831791.1 non-coding upstream 1097810 24178823 ~ 24178938 (+)
XLOC_003487 NA non-coding downstream 537661 25829370 ~ 25830337 (+)
XLOC_003488 CR318604.1 non-coding downstream 786238 26077947 ~ 26078061 (+)
XLOC_003489 NA non-coding downstream 896808 26188517 ~ 26196145 (+)
XLOC_003490 NA non-coding downstream 934373 26226082 ~ 26234069 (+)
XLOC_003497 NA non-coding downstream 1411248 26702957 ~ 26709080 (+)

Expression


Co-expression Network