XLOC_003470 (fam83d)


Basic Information

Item Value
gene id XLOC_003470
gene name fam83d
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25328199 ~ 25336921 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006804
CCAATGGTGGCTCTCCAGCTGTGGGACGAGTCTTCTGGAAAGTACAGCTTACAGTCATGGCTCTTTCCCAGTGTCTCGAGGACTCACCAGGCTGGCGCACACCGAGGAAAGAGCAGGACTCGAACCTTAACGAGCTCTACAATGAGAGACACCGACTGGCTTTGGAGGAGCTGGTGGCCGGGGGAGTGCAGTCATTCATGGGCTTCCTCAAGAAAGAGAGAATGCCCAACTTTCTATCCGAAGACGAGATCAGGAGGGTTTATCGCGCGGCTGTGGTGCCCAAAACAATCTCAATCAACGGAGACGATTCTCATCTGGATCAGTCGGGCACCCTGGACTGCTCATCTGTCACTTACTTCCCGGAGGTCTCTGACATTGAGCCCCCGGTGCTGGAGAACGGCTGGCCGGCGTTCACTGCAGGCTCGTACCGCGGAGTAACGCGAGCGGTCGCCTACTTCCAGCCGAGCTACGGAGAGTGCATTTACAGCTGCAAAGAAGCAGCCAGGAGGATGATCAGAAATGCCAAGGAGGTGATCGCCATTGTGACAGACTCTATGACAGACCTGGACATCTTCCATGATCTGCGGGAAGCTTGCACACGCCGCAGAGTCCCTGTTTATATTCTTTTAGACCAGTCTTCTGTTGCCTCTTTCTT
>TCONS_00006805
ATGGTGGCTCTCCAGCTGTGGGACGAGTCTTCTGGAAAGTACAGCTTACAGGTGGGTGATTTTCATATTTGGGAACGCTTGTGCGTGTGAGACTGAGAAACTTTTAGTCATGGCTCTTTCCCAGTGTCTCGAGGACTCACCAGGCTGGCGCACACCGAGGAAAGAGCAGGACTCGAACCTTAACGAGCTCTACAATGAGAGACACCGACTGGCTTTGGAGGAGCTGGTGGCCGGGGGAGTGCAGTCATTCATGGGCTTCCTCAAGAAAGAGAGAATGCCCAACTTTCTATCCGAAGACGAGATCAGGAGGGTTTATCGCGCGGCTGTGGTGCCCAAAACAATCTCAATCAACGGAGACGATTCTCATCTGGATCAGTCGGGCACCCTGGACTGCTCATCTGTCACTTACTTCCCGGAGGTCTCTGACATTGAGCCCCCGGTGCTGGAGAACGGCTGGCCGGCGTTCACTGCAGGCTCGTACCGCGGAGTAACGCGAGCGGTCGCCTACTTCCAGCCGAGCTACGGAGAGTGCATTTACAGCTGCAAAGAAGCAGCCAGGAGGATGATCAGAAATGCCAAGGAGGTGATCGCCATTGTGACAGACTCTATGACAGACCTGGACATCTTCCATGATCTGCGGGAAGCTTGCACACGCCGCAGAGTCCCTGTTTATATTCTTTTAGACCAGTCTTCTGTTGCCTCTTTCTTACAGATGTGCAAAAACCTTTGTGTACACCTGGATGAACTCCTGcaAATGAAAGTACGGACCATAACAGGCTCTACCTACTACATGCGATCAGGTGCTCGGATCACAGGAAAGGTTCATGAGCGTTTTATGCTGATCGATGGAAACAAAGTGGCAACAGGTTCCTACAGGTTCAACTGGACGGATGGCAAACTCAACAGCAGCAACCTTATCGAATTATCAGGCCAGATAACTGAGAAATTCGATGAGGAGTTCCGTATCCTCTACGCTCAGTCTCTACCGCTGCCAGTGAACACGCGAGCCCCCTCTAGTGCCAGAAACTGCAGCTTATATGACCACCTTGTCCTGAAAGCACCTGGAACGCCTCCCTCCTACTTGGCACGAACAACAAAGCCTCAAGCGGAGCGTCTGACGAGCACTCCAGCCAGACTTCAGACCCCAGAGATCCAGCGGATGAATAAAGACATTAAAGAGCCAGACAGAAAGAGTAACCCAGTTTCTGACTCCTCCACTCTAGGTGAAGACCTAGAACTGGTGCTCGCCTCAGCTGACCCTCCTCGCTTGCCGTCAACCACTGTTAACTCTCAGACTCAGACAGTGGATGTGACGATTGTGTCTTGCTGTGACGTCTCGACACAAACTACCTGCCACACGGCTGATGTGAGCGTACAAACATGCAAAGAGCCTCAGAACTCAAAACCCTCAAGTGAACATCAGAAGGTGGACAGTTGCCCGCCGATCTGCCCCCAGCCACAAGATGTCAACTTTAGAGAGTGTTTCCTCAAGATCACCAAAGAGCGACAGCATCACTACAGCTCCATTCGCTCCAAGCTTGACCACATGGTGACACTGCTGTCCCACAAGAGGGAGTTGGTGGATCTCACCAACCTGCCGTTGAGACCCGGCCTGAACAGAGGACGCAAGGCCCAGCAGGAGGCCAGACAGCCAAACACTAACATTGACAGTGGGATTATGGGCACGTGGCCCAAGTCAAGGGGTTTGCAATAACATGAACTCATGAAAATTACCCAAAGAtgagtcaaatatagacaaatccaagcttttttaaaatcaaaatagtCTATATTTTGAAACATCCCAGCATTTTTATAGGGTATGTTTTAGTGCAGCACTTTTTGTAAAATCTGATATTTTATATGGTGATATTTGAATATATGCAAGAGACAAATGTGCAAAGATACGGTTTCTTATTTTTGGATGAGGGTTTATTGTCTTTGAATGctgtatagtaaaaaaaaaaaaaaacaaccaaagtgCTATGATGAAATCCTGTTCagaaatgttttgtgtttgtttggatGTTTTTCTGTTTCTGGGTTGCTTGAAGTTGTGGAGTACTGATCTTCTTTGTTACACTACTACTGCTTTATCGGTATGAAAACAACAGTCACTCACTTTTGAGTGTTTGATGTGCCTTGAATGATGTTGGTGAAAGGAATGAATCGAAACAATTGTGCTAAATTGGAAACTTTTGGTGTCTTCGATGCGCTCGAGGCATTTGAATATTTCATCAAGGATGCagaattgtttaaaaaacaaaatatgttaaattattcaTCATTGGCTTGTTGCaataaaacagttgatttgatgAACAA

Function

symbol description
fam83d Predicted to enable protein kinase binding activity. Predicted to be involved in several processes, including positive regulation of cell cycle G1/S phase transition; protein localization to mitotic spindle; and regulation of intracellular signal transduction. Predicted to act upstream of or within cell division. Predicted to be located in cytoplasm. Predicted to be active in cytosol and mitotic spindle pole. Is expressed in proliferative region. Orthologous to human FAM83D (family with sequence similarity 83 member D).

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0070372 regulation of ERK1 and ERK2 cascade biological_process
GO:0008283 cell population proliferation biological_process
GO:0051301 cell division biological_process
GO:1902480 protein localization to mitotic spindle biological_process
GO:0051310 metaphase plate congression biological_process
GO:1902808 positive regulation of cell cycle G1/S phase transition biological_process
GO:0032006 regulation of TOR signaling biological_process
GO:0007165 signal transduction biological_process
GO:0005829 cytosol cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0097431 mitotic spindle pole cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-041111-264 Predicted to enable protein kinase binding activity. Predicted to be involved in several processes, including positive regulation of cell cycle G1/S phase transition; protein localization to mitotic spindle; and regulation of intracellular signal transduction. Predicted to act upstream of or within cell division. Predicted to be located in cytoplasm. Predicted to be active in cytosol and mitotic spindle pole. Is expressed in proliferative region. Orthologous to human FAM83D (family with sequence similarity 83 member D).

Ensembl:

ensembl_id ENSDARG00000077883

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006804 False 655 mRNA 0.55 3 25328199 25331325
TCONS_00006805 True 2325 mRNA 0.47 4 25328202 25336921

Neighbor

gene id symbol gene type direction distance location
XLOC_003469 top1l coding upstream 16522 25296366 ~ 25311677 (+)
XLOC_003468 cyldb coding upstream 36490 25276748 ~ 25291709 (+)
XLOC_003467 NA coding upstream 61964 25256812 ~ 25266235 (+)
XLOC_003466 NA coding upstream 100004 25181857 ~ 25228195 (+)
XLOC_003465 trpc4apa coding upstream 147869 25157374 ~ 25180330 (+)
XLOC_003471 si:dkeyp-97e7.9 coding downstream 51826 25388747 ~ 25397129 (+)
XLOC_003472 adnpa coding downstream 66640 25403561 ~ 25408636 (+)
XLOC_003473 si:dkey-13a21.4 coding downstream 93930 25430851 ~ 25435922 (+)
XLOC_003474 opn1sw2 coding downstream 122776 25459697 ~ 25475403 (+)
XLOC_003475 opn1lw1 coding downstream 140722 25477643 ~ 25480037 (+)
XLOC_003369 CR854846.2 misc upstream 9205117 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 12616203 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 12633936 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 12642600 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 12648171 12679732 ~ 12680028 (+)
XLOC_003463 NA non-coding upstream 268101 25059462 ~ 25060098 (+)
XLOC_003447 BX072564.1 non-coding upstream 747085 24580579 ~ 24581114 (+)
XLOC_003444 AL831791.1 non-coding upstream 1149261 24178823 ~ 24178938 (+)
XLOC_003487 NA non-coding downstream 492449 25829370 ~ 25830337 (+)
XLOC_003488 CR318604.1 non-coding downstream 741026 26077947 ~ 26078061 (+)
XLOC_003489 NA non-coding downstream 851596 26188517 ~ 26196145 (+)
XLOC_003490 NA non-coding downstream 889161 26226082 ~ 26234069 (+)
XLOC_003497 NA non-coding downstream 1366036 26702957 ~ 26709080 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_03018466_03023859 FAM83D coding CI01000306 null 3018134 ~ 3024091 (+)