XLOC_003499


Basic Information

Item Value
gene id XLOC_003499
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27207196 ~ 27208386 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008620
CGAAAGCCTCGCCACAACTGGAGAAGATTAATGTTGAAAGAGCGTGCTGAGCGGCAGGACAAATGTGCTGGATTATTCATCATCTCTGCTTTCGctctgtttgttgttttgtttgttttgcagtgCAAAAGCAGATATCATCTGTTTATACTGACGTTTCAGAACGTGTGTTCCCAGGGAATCAAACCCTTGACCTTGGCATTGTGAGTGGCAGCTGAGCCTGATGCCCAAGACGTGCATATTCTCTCTAAAGGTGAATTTTTTCAACTAttcttttttacttttctctCCTATAGAAAACATGTTTAAACTACGTCCGGTTTGGGGAACtgaaacaaatcattttaaataagtgaaaACTGAGTGTGAGGTATGTTTggttttgtgctttatttttatttgtcatgaAAGTAACTAAGAAGaacacccaaaaaaaaaacaaaaaaaacctcaATTTACTCAACTTCCAGCCATTCTTGATGTATATAACTTTGttctctgataaaaaaaaaagcatataatgGTAAGGTGTGCTTTGATGCTGGTTTGCTGGTCTCAATACTGGTCTTGATGGTTTCAATACTGGTCAGGTCCCTCCTCACTGCAAGACACATGAAAGTCTGCATGGAGTTTACTAAAAACAACTGAAGGACTCCAAGATGGTAAGAAAtaagattctctggtctgatgagactaagaTTTTGGCCTTAATTAATTGTAAGCGGTATGTGTGGAGAAAActaggcactgctcatcacctatCCAATAATGTCTCAACAATGAAACGTGGTGGCAGGATCATGCCACTagggtgtttttcagctgcaaGGACAGGACGACTGGTTGCAATCATGGGAAAGATTAaataatggagtggcttcacaacaacgtgactgttcttgaatggcccagccagagccctgacttaaacccaattgagcatctgaGGAAAGACCTAAAAAATAGCTGTCCAGCAACCAGCATACATGACaaaactggagaggatctgcaaggaggaatggcagaggatccccataatcaggtgtgaaaaacttgttgATCTTTCTCAAAAGGACCcatggctgtattagatcaaaagggtgcttctactaaatactaAGCAAAGGGTTTGAATATTTAGGAGGAACAtgtgatattttagtttttgtttttctattaAATTTGCAGACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008620 True 1191 lncRNA 0.39 1 27207196 27208386

Neighbor

gene id symbol gene type direction distance location
XLOC_003498 hdac11 coding upstream 9744 27133560 ~ 27197452 (+)
XLOC_003497 NA coding upstream 498116 26702957 ~ 26709080 (+)
XLOC_003496 si:dkey-57n24.6 coding upstream 523484 26669724 ~ 26683712 (+)
XLOC_003495 dynlrb1 coding upstream 591588 26604224 ~ 26615608 (+)
XLOC_003494 unm_sa1614 coding upstream 644850 26476153 ~ 26562346 (+)
XLOC_003500 fbln2 coding downstream 65969 27274355 ~ 27383732 (+)
XLOC_003501 NA coding downstream 195485 27403871 ~ 27414474 (+)
XLOC_003502 NA coding downstream 305474 27513860 ~ 27526561 (+)
XLOC_003503 CR548622.1 coding downstream 312070 27520456 ~ 27520573 (+)
XLOC_003504 barx1 coding downstream 334707 27543093 ~ 27545719 (+)
XLOC_003369 CR854846.2 misc upstream 11084114 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 14495200 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 14512933 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 14521597 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 14527168 12679732 ~ 12680028 (+)
XLOC_003490 NA non-coding upstream 973127 26226082 ~ 26234069 (+)
XLOC_003489 NA non-coding upstream 1011051 26188517 ~ 26196145 (+)
XLOC_003488 CR318604.1 non-coding upstream 1129135 26077947 ~ 26078061 (+)
XLOC_003487 NA non-coding upstream 1376859 25829370 ~ 25830337 (+)
XLOC_003505 CR931782.2 non-coding downstream 416690 27625076 ~ 27649659 (+)
XLOC_003506 NA non-coding downstream 520854 27729240 ~ 27731175 (+)

Expression


Co-expression Network