XLOC_003505 (CR931782.2)


Basic Information

Item Value
gene id XLOC_003505
gene name CR931782.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27625076 ~ 27649659 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006867
CTACCTACCTTAGGAAATATTAACAGGAGTATGTACTGTGACAGATAGCCCCAGGCAGTGTTTATGACCGCCAGCACATGGTCTCTCAGACGGTAACGGCAGCATGTTTACTCGGCACTAGAGGGCAGATGTTCGGAGTGTCTACAGGTGTTGTTGTCATGGGGTGTTTGACCACCGCAGACGGTAATTAGCGGCTCAGCCCTTCACGCTGGCCGCGATAACATCAATGGGTGACGATTCGCCCTTATCCATCTTCCCGCCATCAGCGGTCACGGTCCATTTCCGCTGCACAAACGCCCGCGGATGTTTTCCTGATTAAAGCGGCAGATACAGCGCGTGTGGGCGGGATAAGCGAGTCAAGTGCAGCCTGACTGTCACTGGTGATGATGCGGGgatttttttctttGCTGAGGATGATGTCCCACATTCCTGCCGTCCACAAGATGAATAATAACACACTAAGAGGACACCAGACAGATGAAGAACACATTTAAATTCTCatggagggagagagggagggatCAGTCCGAGGGTCCATAAACATCAGGAGAAAGTCTGAGTCGCCCTCATTGTCCGTGTTACAGCAGGAGTTTGCCATTACGAAAACGCTATTAACATTTATGCTGAAATTACCTTTGGAATCTGTCGAGTTCCCTCGTTCGACTTTTGCTGGCAGGACTGATGAGGCATTCTgagatgacgatgatgatgaaggCCGTCTGTGGCTGAGGAAGACTCCGGGGGCCATGGGTTGCGAGCCGCCGGCGCTTTTGCCCGTTCCAGTGCTGTATTCGTGATCGGCCATGTTGCTCTCGGAGTCTGGAGTGGGTTCTGGAGAGCTGCTGTCATGAGAGAGTTTGTGAGACTCCTCTGCAACTATGGGCTTCTTTTTGGcgctctttttcttcttcttgatCTTCTGCTCCTCCTGTAGTAAGATGGAGTTAGTAGAGGCATTTGGCGAAATTGCTTTTACAGATGTTTTCTATAAAAGTAGAGGCTATT
>TCONS_00008403
CTTAGGAAATATTAACAGGAGTATGTACTGTGACAGATAGCCCCAGGCAGTGTTTATGACCGCCAGCACATGGTCTCTCAGACGGTAACGGCAGCATGTTTACTCGGCACTAGAGGGCAGATGTTCGGAGTGTCTACAGGTGTTGTTGTCATGGGGTGTTTGACCACCGCAGACGGTAATTAGCGGCTCAGCCCTTCACGCTGGCCGCGATAACATCAATGGGTGACGATTCGCCCTTATCCATCTTCCCGCCATCAGCGGTCACGGTCCATTTCCGCTGCACAAACGCCCGCGGATGTTTTCCTGATTAAAGCGGCAGATACAGCGCGTGTGGGCGGGATAAGCGAGTCAAGTGCAGCCTGACTGTCACTGGTGATGATGCGGGgatttttttctttGCTGAGGATGATGTCCCACATTCCTGCCGTCCACAAGATGAATAATAACACACTAAGAGGACACCAGACAGATGAAGAACACATTTAAATAAAACGCTATTAACATTTATGCTGAAATTACCTTTGGAATCTGTCGAGTTCCCTCGTTCGACTTTTGCTGGCAGGACTGATGAGGCATTCTgagatgacgatgatgatgaaggCCGTCTGTGGCTGAGGAAGACTCCGGGGGCCATGGGTTGCGAGCCGCCGGCGCTTTTGCCCGTTCCAGTGCTGTATTCGTGATCGGCCATGTTGCTCTCGGAGTCTGGAGTGGGTTCTGGAGAGCTGCTGTCATGAGAGAGTTTGTGAGACTCCTCTGCAACTATGGGCTTCTTTTTGGcgctctttttcttcttcttgatCTTCTGCTCCTC
>TCONS_00008404
CGGCAGCATGTTTACTCGGCACTAGAGGGCAGATGTTCGGAGTGTCTACAGGTGTTGTTGTCATGGGGTGTTTGACCACCGCAGACGGTAATTAGCGGCTCAGCCCTTCACGCTGGCCGCGATAACATCAATGGGTGACGATTCGCCCTTATCCATCTTCCCGCCATCAGCGGTCACGGTCCATTTCCGCTGCACAAACGCCCGCGGATGTTTTCCTGATTAAAGCGGCAGATACAGCGCGTGTGGGCGGGATAAGCGAGTCAAGTGCAGCCTGACTGTCACTGGTGATGATGCGGGgatttttttctttGCTGAGGATGATGTCCCACATTCCTGCCGTCCACAAGATGAATAATAACACACTAAGAGGACACCAGACAGATGAAGAACACATTTAAATTCTCatggagggagagagggagggatCAGTCCGAGGGTCCATAAACATCAGGAGAAAGTCTGAGTCGCCCTCATTGTCCGTGTTACAGCAGGAGTTTGCCATTACGGTGAATCTTTAAGATTTTTCCAAGTCTCTGTTTGGCGGTGGCCATTCCTTTCTTTAGCCTCTTGGCTGAGAGCGAGATGAAGTGAAATGGTTAGCATGTGCAAAAACATTGTGTATCAATGCATTATTACACCACAGCTGCGTCAATCCATTACGAACAGTGCAAAGTAAACAAACCTTTAAACATGAATGCATATTCATCACAGAAGGTTCTATTAAAGGAGAaatatttcagctcattttcagTTGAGTTtctttcagttgaacacaaaagaagatactatAAAGAATGTTGGAACCTCAGTAGCCATTTACTTTCATAGCATACTTTTTTTCCTATAAAGGATGTCAATTGCTAACTATTTCTAACAAATTTATAACTATTTCTTGTTATACCCTTTCTGAGGCATATGTAAAGGGTTTTTTAAGTAGTTTTCTTAATATGttgtaatgaaatctgtgtttttgaagtcAATGAAGAtagtagaagtcaatgatttattgtaattatacatatttactgttccaaaatattataaatatttgctAAAAGGTCATATAAATTGTGTTAAAGGAGGacaaatgttgctgttttttactaagacatttaaataaaatgattttacaGCGGTaaacacaatactgtgataccttGAAACCATGatctttttatccaaggttatcattccgtcagaaacttatacctgCCCATGCCTAAAGTGCACTCATGTAGAACAAATGAC
>TCONS_00008622
tttatttttTATCATTCACTGCCATGAAACAGTGGATGCATTTAATTGTttgaacatataaaaataaaccacAACAAAGCAACACACATTTTGtacaaataaaaacctgaaatagTTCCATTGACAAAGATTCTGAGTGTTTCGATTGGGAAAGGTGGATACAAGATTTACATTGGTAACTAAAACACTGCAATTTATGAGCACAGTAAACCTGGTTAAGAATGTACATACTCTATTACCAAAAATAAAACTCATGGCATGATAGAATGGATCTTTAAAATagctgcttaataataataataataacgatgtaACATTTCGTATTGATGAGCAGTTGCACTTGATTTGATGAAAACGATAAAGACATATGGTTTTgctaagacaaaaaataaaaggaaCTATTGCCCAATGTTAATGATAGAAGTGTCCTAAGGGGCTCACAGACTGATGAAATATTTCAAAGAAAACCTCTTAAGAATTATACAAGTATAAAAGGCtacaaacattaataaattacatcACTGACACAGAAAACACTTCACAAGGTGCtagtaaaataactttaaaatccATCAGGGGTATTTTAGCTCAAATGTCAGGCTGGTCGTagaaacttgattttttttctctcttctccCCATCATAAATGAATCATAATACACATGGTTTTATGCATGTAAGGCCATATGAGAATAAATGTTACACTGTTTATTTTGTTCTCCAGGCAACACCTTTTGTCTAATGTAACagaatgaaacaaaacaattgtaaaaaaaaaaaaaaagaaatgattaaaTCAAATCTGGTATTCTGTGTCAAacgaaaacatttaatttttaaacgtACTGACTATTtctatatctttatatatatttttccgtCTGTAATTAGCAAAAACtagtaaaaatgtataatgaaGTATTAAGGAGGAAAAAAAAGGATACAAAAAGTAGTCATTTAAAAAGCTATATACAGGCTACATTCTACATACTGTACTGTGAAGCAATATAAATGCATATTTCATTCTAGGGTAACTGGTGCTGCCTGTGAAACAAACAGAAGACAGAAAGTATCCCCATGTAGTGAAATGTCCTGGATGAGGCTTATCATCAGTGCTGGAGATCCCATTGATGTAGTGTTACCTTGTCTGTTTTTGTTTGGGCCGAGTGTTTCGTATGGAACTGTAATAAGAGCTACATTGTCAAACAATAACATAATGCGAAAAACAGGATGACATGCGATTGATTGTAGTATCAatgtctaaaaaaatatatatataaatataaataaaatgtaacttttgtatggctgaaattaaatatttcagaCATGAAACTTACTGGAAATATGGTTTGATATTGATATGTGTGTTTAATAATCCGTCAATATATAAAAATCGACGTTTTTTCATCACAAAATCATATTTCTTTTCCTatgttagtaaataaaataagaataacaaCATAAAGCCGCTTTACTAATTCCTATTTGTGCTTCACTGATGTTTTGTAAGTGCCTTCTGGCTTTTTCAAATCTACCTATGACATGAAAAATTATATTAAGTCAATAAATATCATCTGTGATAGTGCTTTGCAAACAGAAAAGTACTCTTTTTATTTAGCcgtgttttttttgtgttgtcgGTTCATCTCTTTTGTTTAAGGAAACTTAAAAGggtaaaaatctaaatcaaaatcaCTCGGGAAGTTATTGAATATCATCATATGTTTAGAaatagttgtttaaaaaaatgaatgataagCCACATCCAAAAAGCAGTAATGAACTTTCCGTGTGCAACCTTCCAGCAAACTCTTCCCCCTTCAAAATTATAATGCATGCAACTGGAATACATGCAGGGGATACTTTCTTTATCTTGGAATGACTGCTATGTATCTTATAATATAttagcaacccctgataaaacTGATAGCCGtagtaaaacaagacaaaaatcttcTTACAAAATATTAATAGCAGGTATTCTGTACATTTTTTAATATCTGAAAGTTATAAAGTAAAAGAGGCAAAAACCTATCTGAGCTATGTTCTTCTTAGAAATTGAAAACTTGTGGGATCCGTTATGATTTTTTTACTCCGCGTCCTCCCGTCTGTTTCAGTCTCatggagggagagagggagggatCAGTCCGAGGGTCCATAAACATCAGGAGAAAGTCTGAGTCGCCCTCATTGTCCGTGTTACAGCAGGAGTTTGCCATTACGGTGAATCTTTAAGATTTTTCCAAGTCTCTGTTTGGCGGTGGCCATTCCTTTCTTTAGCCTCTTGGCTGAGAGCGAGATGAAGTGAAATGGTTAGCATGTGCAAAAACATTGTGTATCAATGCATTATTACACCACAGCTGCGTCAATCCATTACGAACAGTGCAAAGTAAACAAACCTTTAAACATGAATGCATATTCATCACAGAAGGTTCTATTAAAGGAGAaatatttcagctcattttcagTTGAGTTtctttcagttgaacacaaaagaagatactatAAAGAATGTTGGAACCTCAGTAGCCATTTACTTTCATAGCATACTTTTTTTCCTATAAAGGATGTCAATTGCTAACTATTTCTAACAAATTTATAACTATTTCTTGTTATACCCTTTCTGAGGCATATGTAAAGGGTTTTTTAAGTAGTTTTCTTAATATGttgtaatgaaatctgtgtttttgaagtcAATGAAGAtagtagaagtcaatgatttattgtaattatacatatttactgttccaaaatattataaatatttgctAAAAGGTCATATAAATTGTGTTAAAGGAGGacaaatgttgctgttttttactaagacatttaaataaaatgattttacaGCGGTaaacacaatactgtgataccttGAAACCATGatctttttatccaaggttatcattccgtcagaaacttatacctgCCCATGCCTAAAGTGCACTCATGTAGAACAAATGAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000105338

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006867 False 1005 lncRNA 0.50 4 27625076 27649659
TCONS_00008403 False 814 lncRNA 0.51 3 27625084 27649582
TCONS_00008404 False 1248 lncRNA 0.40 3 27625172 27647440
TCONS_00008622 True 2968 lncRNA 0.32 2 27637973 27647440

Neighbor

gene id symbol gene type direction distance location
XLOC_003504 barx1 coding upstream 79357 27543093 ~ 27545719 (+)
XLOC_003502 NA coding upstream 98515 27513860 ~ 27526561 (+)
XLOC_003503 CR548622.1 coding upstream 104503 27520456 ~ 27520573 (+)
XLOC_003501 NA coding upstream 210602 27403871 ~ 27414474 (+)
XLOC_003500 fbln2 coding upstream 241344 27274355 ~ 27383732 (+)
XLOC_003506 NA coding downstream 79581 27729240 ~ 27731175 (+)
XLOC_003507 BX601648.2 coding downstream 88830 27738489 ~ 27744282 (+)
XLOC_003508 alpl coding downstream 319175 27968834 ~ 28010171 (+)
XLOC_003509 nmur3 coding downstream 457973 28107632 ~ 28126139 (+)
XLOC_003510 ephb2b coding downstream 516506 28166165 ~ 28424314 (+)
XLOC_003369 CR854846.2 misc upstream 11501994 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 14913080 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 14930813 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 14939477 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 14945048 12679732 ~ 12680028 (+)
XLOC_003499 NA non-coding upstream 416690 27207196 ~ 27208386 (+)
XLOC_003497 NA non-coding upstream 915996 26702957 ~ 26709080 (+)
XLOC_003511 CR450786.1 non-coding downstream 792714 28442373 ~ 28447433 (+)
XLOC_003513 BX649345.2 non-coding downstream 867903 28517562 ~ 28520764 (+)
XLOC_003514 NA non-coding downstream 883565 28533224 ~ 28616959 (+)

Expression


Co-expression Network