LOC110498685 (LOC106602680)


Basic Information

Item Value
gene id LOC110498685
gene name LOC106602680
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 19668259 ~ 19669604 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955487.1
gaagactgGTATCAGCAGAAGGAGGAGAAGCTGAAAGACAGACCGGAGGAGCTGATGCTGTGGGCGGCGGAGAATAACAGAGGGACTCTGCCGACGGTCAAGCGGCTGCTCTCGGTTGACCCCTTGCTTGCGCATTGCCAGGACGAGGACGGCTATACTTCGTTGCACCATGCGGCCTACGGAGGCCACGCCGCCACGGCCTCTACCCTGCTGCCAGCGGGCACCGAAGTTAACTCCCGCACTGCCGACGGCTGGACGCCCCTACACGGCGCCTGTCGCTGGGGCCAAGTCGCCACCGCACGCCCAGCCCAACGGTGGCCTCACAGCGCTCCACCTAGCTGCCTCCCACCCTGGACAGGGCTCCGCCCACACGCTGGAGTTCCTCCTATCGCTGTGCTCCATCAAGGCGGAGCTTCAGAGCAAAAGCTAGGAGAAGGCCAGTGAAATCACTAGCCGAAGTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K21439 ANKRD49; ankyrin repeat domain-containing protein 49

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955487.1 True 461 mRNA 0.64 2 19668259 19669604

Neighbor

gene id symbol gene type direction distance location
LOC118941464 NA coding downstream 58338 19594353 ~ 19609921 (-)
LOC110497533 LOC106609955 coding downstream 69263 19594353 ~ 19598996 (-)
LOC110498562 NA coding downstream 133049 19525106 ~ 19535210 (-)
LOC110497535 LOC106602669 coding downstream 143989 19517262 ~ 19524270 (-)
LOC118941546 NA coding downstream 247792 19397768 ~ 19420467 (-)
LOC110497529 LOC100136072 coding upstream 61844 19666386 ~ 19751340 (-)
LOC110497528 LOC106609961 coding upstream 68303 19737907 ~ 19741020 (-)
doc2d LOC106609963 coding upstream 82205 19751809 ~ 19804307 (-)
LOC110498680 LOC106609964 coding upstream 171782 19841386 ~ 19866037 (-)
trnak-uuu-127 NA coding upstream 324990 19994594 ~ 19994666 (-)
G1599762 NA non-coding downstream 24676 19643321 ~ 19643583 (-)
G1599761 NA non-coding downstream 25031 19643014 ~ 19643228 (-)
G1599758 LOC106609957 non-coding downstream 26256 19638760 ~ 19642003 (-)
G1599757 NA non-coding downstream 33276 19634500 ~ 19634983 (-)
G1599756 NA non-coding downstream 34505 19633538 ~ 19633754 (-)
G1599785 NA non-coding upstream 155899 19825503 ~ 19826398 (-)
G1599861 NA non-coding upstream 157529 19827133 ~ 19827428 (-)
G1599959 LOC106609974 non-coding upstream 349213 20018817 ~ 20033190 (-)
G1599977 NA non-coding upstream 365164 20034768 ~ 20034984 (-)
G1599978 NA non-coding upstream 365921 20035525 ~ 20035728 (-)
G1599760 LOC106609957 other downstream 31232 19636018 ~ 19637027 (-)
G1599717 NA other downstream 110902 19555597 ~ 19557357 (-)
G1599197 NA other downstream 286508 19372309 ~ 19381751 (-)
G1599097 LOC106609944 other downstream 458295 19209292 ~ 19209964 (-)
G1600014 LOC106609977 other upstream 438311 20107915 ~ 20108791 (-)
G1600030 NA other upstream 457607 20127211 ~ 20136561 (-)
G1602753 NA other upstream 2733912 22403516 ~ 22403837 (-)
G1602763 NA other upstream 2745814 22415418 ~ 22416043 (-)
LOC110497482 LOC106610017 other upstream 3472212 23121508 ~ 23168994 (-)

Expression


Co-expression Network