LOC110497514 (LOC106610028)


Basic Information

Item Value
gene id LOC110497514
gene name LOC106610028
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 21763166 ~ 21790562 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573653.2
CTGCCTGGAGAAATTTCCATCTCACTGGTTGTACTATTTTTGTCAGCGACTTAAATAATAGGTATAATAACAACATAGTGAAATTGGTATCTCGGTTAAAAAAGTTCAAAAACGTTTGCAGTACGTTTTATTAGTTGGGCATATTTGTAGTCAGCCCTTTGCCTTTTACGTGTAGGTCCGTAGCCTCCCGTGTCATTGGTGAATGACCGAAGATGTCGAATAGTAGGTTGTTTGCCCGGCTGCTCTTGCAGCAAAATGGGGTAAGGAACTGTTATACTGCTTCAAGGAAGCACCTCTACATTGACAAAGACACCAAGGTCATTTGCCAAGGCTTCACAGGGAAGCAGgGGACGTTTCACAGTCAGCAGGCAATCGACTATGGCTCCCGGCTAGTCggtggcgtgtcccccggcaaGGGGGGGAGGACACACCTTGGCGTGCCTGTCTTCAACTCTGTCAAGGAGGCGAGAGAGGGTACCGGGGCCGAGGCCACAGTGATCTACGTGCCCCCTCCATTCGCGGGTGCCGCCATCATGGAGGCCATCGACGCTGGCATGCCCCTGGTGGTGTGCATCACAGAGGGCATCCCCCAGCAGGACATGGTCAAGGTCAAACACAAGCTGTTGCGCCAGAGCACCACGCGCCTCATCGGCCCCAACTGCCCCGGCGTTATTAATCCGGGAGAATGCAAGATCGGGATCATGCCGGGCCACATTCACAAGAAAGGGAGGATTGGCATTGTCTCAAGATCGGGAACTCTCACATATGAAGCTGTTCACCAGACTTCACAAGTTGGCCTGGGACAGTCTCTCTGCATCGGCATTGGCGGGGACCCCTTCAATGGGACAGACTTCATTGACTGCCTGGAGGTATTCCTGCAGGACCCTAAGACGGAGGGCATCATCTTGATCGGAGAGATCGGAGGCAACGCCGAGGAGAACGCTGCCAATTACCTCAAACAGCACAACTCTggaacAAATGCCAAGCCCGTGGTGTCTTTCATCGCCGGGCTCACTGCCCCGCCGGGCCGTAGGATGGGTCACGCTGGTGCCATCATCGCAGGGGGCAAGGGTGGAGCCAAAGAGAAGATTGCCGCCCTACAGCAGGCGGGCGTTGTGGTCAGCATGTCCCCGGCTCAACTGGGCAGCACCATGTTCAAGGAGTTTGAGAAGAGGAAGATGTTGTAAACGGGGaaaggcaccccccccccccccatcttcccGACCGAAGCCCCTActaatatacacactcactacgcAGTGTTTTTAAGATGTTTTTGATTTAAGCTATGAATTCATACCATTACACAAAGAGTGTAAATATATCAGTATATCTTGATGTCTTTTAAATATGTGATACCTTGTCTTTTAGAGGACAGTTATTGTCATCTGTTATGGTAGCTTCTGATGTGTTTAGtttgacaacagaggaggaatgCCAAGGTAAACGAGGTGATCTGGTTCCTGTGTTGTCTTTCTACTACTACACTCTCCTACTGTAACCAAGTATTCCATCAAAATGTCTGTTCTCACTGGCTATACACCTGAATAAGAAAATATCTCGAACACGG

Function

NR:

description
succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like

GO: NA

KEGG:

id description
K01899 LSC1; succinyl-CoA synthetase alpha subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573653.2 True 1570 mRNA 0.51 9 21763166 21790562

Neighbor

gene id symbol gene type direction distance location
LOC110497516 LOC106609982 coding downstream 634642 21124027 ~ 21128524 (-)
adra1b adra1b coding downstream 1322242 20420056 ~ 20440924 (-)
LOC110497518 LOC106609978 coding downstream 1488185 20203350 ~ 20274981 (-)
trnak-uuu-127 NA coding downstream 1768500 19994594 ~ 19994666 (-)
LOC110498680 LOC106609964 coding downstream 1897129 19841386 ~ 19866037 (-)
LOC110497512 LOC106610027 coding upstream 8693 21799255 ~ 21820806 (-)
LOC110497511 tacr3 coding upstream 105655 21894972 ~ 21934646 (-)
LOC110498676 NA coding upstream 208686 21999248 ~ 22001354 (-)
LOC110497508 LOC106610024 coding upstream 217761 22008323 ~ 22121011 (-)
LOC110497506 mnd1 coding upstream 332862 22122397 ~ 22169711 (-)
G1601662 NA non-coding downstream 181087 21581809 ~ 21582079 (-)
G1601624 NA non-coding downstream 231274 21531649 ~ 21531892 (-)
G1601621 NA non-coding downstream 236498 21526419 ~ 21526668 (-)
G1601596 NA non-coding downstream 276732 21486185 ~ 21486434 (-)
G1601487 NA non-coding downstream 331972 21430880 ~ 21431194 (-)
G1602431 NA non-coding upstream 30668 21821230 ~ 21821434 (-)
G1602433 NA non-coding upstream 31578 21822140 ~ 21822884 (-)
G1602436 NA non-coding upstream 35127 21825689 ~ 21839524 (-)
G1602462 NA non-coding upstream 73284 21863846 ~ 21864208 (-)
G1602464 NA non-coding upstream 75193 21865755 ~ 21866044 (-)
G1600030 NA other downstream 1626605 20127211 ~ 20136561 (-)
G1600014 LOC106609977 other downstream 1654375 20107915 ~ 20108791 (-)
G1599758 LOC106609957 other downstream 2121163 19638760 ~ 19642003 (-)
G1599760 LOC106609957 other downstream 2126139 19636018 ~ 19637027 (-)
G1599717 NA other downstream 2205809 19555597 ~ 19557357 (-)
G1602753 NA other upstream 612954 22403516 ~ 22403837 (-)
G1602763 NA other upstream 624856 22415418 ~ 22416043 (-)
LOC110497482 LOC106610017 other upstream 1351254 23121508 ~ 23168994 (-)
G1604902 NA other upstream 2183228 23973790 ~ 23974106 (-)
gpr137c LOC106602981 other upstream 2400136 24176332 ~ 24206622 (-)

Expression


Co-expression Network