LOC110497562 (LOC106603201)


Basic Information

Item Value
gene id LOC110497562
gene name LOC106603201
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 26313358 ~ 26326870 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954519.1
CAAAACAGATCCCGTGGGCCAGTTCGAATACTTTCAAAATACATCCTTCCCCCCATATATCGTCCACCTCTGCTGTTACGTCAGATCAGTGAACACTTAAAGGAAGAAAAGAAGGATGTATTGTAATGATTCGACCGGTGACTCGCTCTCGCCGCTGCGCAGTGCAGATATTACCGGGAGGGCTGAACTGTAGAATCTCCCGCTATGAAATCACAACCTCAATTTACAACACGACGTTAGCATGCGTTTCTCTGTCTACTCGTCAAAAGGGCCATCAGGTGCATCGTTAGAGACTGGCGCTGACATGTTGGTGACGGGTGTGCTTTCCCTGCTCCTACTCGCGCACCAGTGTGTTTCTGCGCCACAGGTGCCCGGGGACCAAAGAGTAGAGTCAGCAGgagcccctccccctctcacactGGCCAATCCCTTTGGCTCTGGAGACGAGGAGCGCAGgctgCTGCAGAGCTACATCAAGGCCAACCTGAAGGAGGGACAGGGAGGACCAGATAGCACCTGGGAACAAGAGGTGTTTTTCCTGTTTAGTCTCCATGACTATGACCGGAGCGGTGACATGGATGGCCTGGAGATGATGAGGCTGCTCTCTGAATACAACTCCCACAATAGGCCTGGAGAACAGTCAGCTGAgccgGTGGTGGACATGGTAGACTTTCTCCTGCAGACTCAGGATCTAAACATGGATGGTCTAATAGCACCCCCTGAGCTACTCTCTCCCCCCAAACTACAACAACCAGACTCCTACTCCCCGGGTGCACCTGAACAGGGAGGGAGTGTGGCCCAGGAACAGGTAAAGGTCCAAGTGGAAGTCAAAGTTGTTGAGGAACCAAAACTAGAAAAAGCAGCACAGAAAGAGAGGAATGTAGAGGAACAGCCCAAGGAAGAAGAGTCAAAGCCAGGAGTTGTGGGACAGGAAGTTAAGACCAATGAACATCCTATACAGGCAGAGGAGAAAGGACTGCATATCCCAGAGGCCCCTGCTGCTGATCATGAGCAAAATAGGCCTGCTCCTGTACATCAGGGGCAGCCtgaaatgtaaacacacacaatacccaaacAGCACTCCAACACTTCCGTCCAGACAATAGCAGGAGCCCTTTGACTGGCAGCAGAGTTAGCAAATCACAGCCCCTCATCTACCTTGGGGGAGGGGCTTGTTTTTCACATTGAGGGATTTCTTTGGTACTGAATTATAAACAGATGTCAGCCATATTGTTTAAGCTGCTGTTATTTCACATTGCACTTCTGAACAAGATCAAGTGAGAATATAATtgtattaaatgtattttgcCAAGAGATACCTTACACTGCTAAATAGTTCAGTTTATTGATTTTGGGGTAAATAGTTGCTATGAAAATGAAGCCATATATATTGGAATGGACAATCTGAAGAAAAGTTAATGGACTGCATGTATGAACTTGTCAAACGCAACGCCTTTAAATGATACTTGGAGAAAGTATTCCCCTCCAGTgcaatatttttaaaaaattcaCTCCCCCTCATGGATGCAAAAGGAGTGGTTTGGTTGAAGAAATTCAGTGGGAAAAGCCCTTTAACTCATGGAATTGGGCTCTGTCACAGCAGCTGTTGACTAGATTCTCCCTTTTCCAGATCAAAAAAACCTAGAAACTGAAGTGCCATCTGGTGATTTTCagattacatttattttgctGCCTGCTCACAGTAAACTAGAGCCCAATTTAGTCTCACTTCTAGAAGTGTGCACTTGATCCTTTAAAATCCATGAGGGGAGTAAACACTTTGCGGAGTTGTGTAATCAATGATTTAGGAACATGGGATAAATATTTGGTTTGCTGTAAATTTCCTGAATTGGAAGGTTTGTATATTTATGACAAAAATAAAGCCAACTTGACTGCCA
>XM_036954520.1
CCAAAACAGATCCCGTGGGCCAGTTCGAATACTTTCAAAATACATCCTTCCCCCCATATATCGTCCACCTCTGCTGTTACGTCAGATCAGTGAACACTTAAAGGAAGAAAAGAAGGATGTATTGTAATGATTCGACCGGTGACTCGCTCTCGCCGCTGCGCAGTGCAGATATTACCGGGAGGGCTGAACTGTAGAATCTCCCGCTATGAAATCACAACCTCAATTTACAACACGACGTTAGCATGCGTTTCTCTGTCTACTCGTCAAAAGGGCCATCAGGTAAGATAAGGCAACATTGCAATGTGCATCGTTAGAGACTGGCGCTGACATGTTGGTGACGGGTGTGCTTTCCCTGCTCCTACTCGCGCACCAGTGTGTTTCTGCGCCACAGGTGCCCGGGGACCAAAGAGTAGAGTCAGCAGgagcccctccccctctcacactGGCCAATCCCTTTGGCTCTGGAGACGAGGAGCGCAGgctgCTGCAGAGCTACATCAAGGCCAACCTGAAGGAGGGACAGGGAGGACCAGATAGCACCTGGGAACAAGAGGTGTTTTTCCTGTTTAGTCTCCATGACTATGACCGGAGCGGTGACATGGATGGCCTGGAGATGATGAGGCTGCTCTCTGAATACAACTCCCACAATAGGCCTGGAGAACAGTCAGCTGAgccgGTGGTGGACATGGTAGACTTTCTCCTGCAGACTCAGGATCTAAACATGGATGGTCTAATAGCACCCCCTGAGCTACTCTCTCCCCCCAAACTACAACAACCAGACTCCTACTCCCCGGGTGCACCTGAACAGGGAGGGAGTGTGGCCCAGGAACAGGTAAAGGTCCAAGTGGAAGTCAAAGTTGTTGAGGAACCAAAACTAGAAAAAGCAGCACAGAAAGAGAGGAATGTAGAGGAACAGCCCAAGGAAGAAGAGTCAAAGCCAGGAGTTGTGGGACAGGAAGTTAAGACCAATGAACATCCTATACAGGCAGAGGAGAAAGGACTGCATATCCCAGAGGCCCCTGCTGCTGATCATGAGCAAAATAGGCCTGCTCCTGTACATCAGGGGCAGCCtgaaatgtaaacacacacaatacccaaacAGCACTCCAACACTTCCGTCCAGACAATAGCAGGAGCCCTTTGACTGGCAGCAGAGTTAGCAAATCACAGCCCCTCATCTACCTTGGGGGAGGGGCTTGTTTTTCACATTGAGGGATTTCTTTGGTACTGAATTATAAACAGATGTCAGCCATATTGTTTAAGCTGCTGTTATTTCACATTGCACTTCTGAACAAGATCAAGTGAGAATATAATtgtattaaatgtattttgcCAAGAGATACCTTACACTGCTAAATAGTTCAGTTTATTGATTTTGGGGTAAATAGTTGCTATGAAAATGAAGCCATATATATTGGAATGGACAATCTGAAGAAAAGTTAATGGACTGCATGTATGAACTTGTCAAACGCAACGCCTTTAAATGATACTTGGAGAAAGTATTCCCCTCCAGTgcaatatttttaaaaaattcaCTCCCCCTCATGGATGCAAAAGGAGTGGTTTGGTTGAAGAAATTCAGTGGGAAAAGCCCTTTAACTCATGGAATTGGGCTCTGTCACAGCAGCTGTTGACTAGATTCTCCCTTTTCCAGATCAAAAAAACCTAGAAACTGAAGTGCCATCTGGTGATTTTCagattacatttattttgctGCCTGCTCACAGTAAACTAGAGCCCAATTTAGTCTCACTTCTAGAAGTGTGCACTTGATCCTTTAAAATCCATGAGGGGAGTAAACACTTTGCGGAGTTGTGTAATCAATGATTTAGGAACATGGGATAAATATTTGGTTTGCTGTAAATTTCCTGAATTGGAAGGTTTGTATATTTATGACAAAAATAAAGCCAACTTGACTGCCA

Function

NR:

description
cell growth regulator with EF hand domain protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954519.1 False 1898 mRNA 0.46 6 26313358 26326869
XM_036954520.1 True 1922 mRNA 0.46 6 26313358 26326870

Neighbor

gene id symbol gene type direction distance location
LOC110497555 LOC106603151 coding downstream 50476 26229014 ~ 26262882 (-)
efcab11 efcab11 coding downstream 170006 26057106 ~ 26143352 (-)
foxn3 foxn3 coding downstream 305115 25893224 ~ 26008243 (-)
ston2 ston2 coding downstream 437285 25825790 ~ 25876073 (-)
dio2 dio2 coding downstream 627639 25678207 ~ 25686102 (-)
trnal-cag-28 NA coding upstream 286499 26613369 ~ 26613451 (-)
LOC110498692 LOC106603236 coding upstream 290584 26617454 ~ 26640534 (-)
LOC110497568 LOC106603844 coding upstream 324599 26651469 ~ 26654910 (-)
LOC110497567 LOC106603250 coding upstream 328143 26655013 ~ 26661730 (-)
LOC110497570 LOC106603258 coding upstream 342926 26669796 ~ 26680308 (-)
G1608475 NA non-coding downstream 19717 26285937 ~ 26293641 (-)
G1608472 NA non-coding downstream 32348 26280746 ~ 26281010 (-)
G1608412 NA non-coding downstream 89223 26223363 ~ 26224135 (-)
G1608445 NA non-coding downstream 95827 26217254 ~ 26217531 (-)
G1608444 NA non-coding downstream 98149 26214939 ~ 26215209 (-)
G1608505 NA non-coding upstream 59671 26386541 ~ 26387023 (-)
G1608521 NA non-coding upstream 79904 26406774 ~ 26406973 (-)
G1608527 NA non-coding upstream 85499 26412369 ~ 26438110 (-)
G1608613 NA non-coding upstream 201010 26527880 ~ 26528086 (-)
G1608617 NA non-coding upstream 206878 26533748 ~ 26534005 (-)
G1606398 NA other downstream 918146 25382760 ~ 25395212 (-)
sptlc2a sptlc2 other downstream 1456637 24847088 ~ 24908731 (-)
LOC110497546 LOC106603015 other downstream 1469221 24792012 ~ 24844151 (-)
G1608529 NA other upstream 97161 26424031 ~ 26427303 (-)
G1608576 NA other upstream 258068 26584938 ~ 26610983 (-)
shprh shprh other upstream 584527 26887874 ~ 26912468 (-)
G1608844 LOC106603413 other upstream 611000 26937870 ~ 26941380 (-)
G1608988 LOC106603498 other upstream 868878 27195748 ~ 27201735 (-)

Expression


Co-expression Network