LOC110497567 (LOC106603250)


Basic Information

Item Value
gene id LOC110497567
gene name LOC106603250
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 26655013 ~ 26661730 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573730.2
CCTTTCAGAATGGAGACATGTCAGGTGAGTGACCAGGTGGATCCAGCCCAGTGCCAGGGTCAGGTGGACCTGACAGAGGACCTGAGCAAGCAGCTAGAGGACATCATTAGTACCTACCAGGAGGCCAGTGAGGAGCCTGCTGAgcaggaagaggtggaggaggaggttcTGAAGGAGCAGGTCACCAAGACCTCCGCCAAGGACCAGAAACTTGAGAAGAAGATGCTGAAAAGCCTTGGCAAAGAGGCCATGCTATTGATGCAGAGCTTGAACAAGCTCGGCACTCCAGAGCAGAAACTGGAGGCCATCATCAAGAAGCACGCTGATCTGctgGAGGAGCACCGGGGTGACCAGAAGCAGCTGAAGGTTCTGCAGAAGAAGCTTCTTCAGGTGATGAAGGAGAAGGACCAGCTTCAGAGTGAACACAGCAGAGCGGTTCTGGCCCGCAGCAAACTGGAGTCTCTGTGTAGGGAGCTGCAGAGACACAACAAGACACTGAAGGAGGAGACCCTCCAGAGGTGCAGGGAGGACGACCTGAAGAGGAAGGACATCACCACTCACTTCCAGAGCACGCTGACGGACATCCAGGTCCAGATCGAGGAGCACAGTAACCGCAACACCAAACTCTGTCAGGAGAACAGCGACCTGGCAGAGAAACTCAAGAGCCTCATCTCCCAGTACGACGCAAGAGAAACGAACCTGGAAAAGGTATTCAAACATCGAGACCTGCAGCAGCAGTTGTTGGAAACCAAACTTGAACAGGCAAACATATTCattaaagagggagaggagaagcaCAAGCGAGAGAGGGATCATTTGATAAATAAGGCGGCACAGTCACAGGTGAAGGTGCAGATTCTGAAAGAACAAGAGGAAGGGATGCAGGCCCAGTTGTCCATGTACTCTGAGAAGTTTGATCAGTTCCAGGGGACTGTGTCGAAGAGCAACGGAGTGTACGCCAGCTTCAAACAGGACATGGATAAGATGACCAAGAGAATGAGAAAGCTGGAGAAGGAGTCTATTCAATGGAAAAGCCGTTTTGAGGGCTGCAACAAGGCTCTTATTGATATGCTCACAGACAAAACCCTGAAGGAAAAGGAGTTTGAGCTGTTCACCCTGAAGACCCAGAAGCTGGAAAAACTGTGCCGGGCgctgcaggaggagaggaacagtctcTCTCATAAGCTCCAGGAAGCAAATCCAGCGGCTGCCACCAATGTAGCGGAGATGAAAGAAAATGAGACAAAGGAGAACCCAGAGGTACCTGCTGCTGAGAAGCCCATTGAGACACCCTCTGAAAACCCCTCGAAAGAAAGCCCTACTCTCAAAGTACCTGTTGCTACAGAAACCCTCGCAGTTGTAACTCCTGCTCCGGAAAAACCTGCTCCTGCAACACACCTGACCAGCGAGCTGGATAACCTGAAGGCCCAGAAGTCCCGTCTGCAGGAGATTCAAATGTCGTTCACCCTTTCCAACATTGTGCCACCTGAGTTCTTTGACCACGACGAAGAGGAGGAGACCACCACAGAGCCACATGGACACAGGGAGGCCCCAGAGGCCAGTAGTGAGGCCAGCAAGACCCCAGAGGAACATCACATAGAGGGGTGTAATGGAGACAAAATGACAGAGGAGACCACTGgccctttttcttcttcttctgcagcAGCTGAAGGACACGAGGCCCAGGAGCAGAGAGATAGGGAACTGGAGACAGTTGACTAGACTAtggtgtagttacagtaggttacAATCAGAGATGAAGAACATGAAGTGATCATAACTTATTTGACTGGATTTTTTAAGAATAAACAATAAAAACGTG
>XM_036954524.1
TCCTCATCGACTTATGTCATGAAGGTGCAAGCCTTTCAGAATGGAGACATGTCAGGTGAGTGACCAGGTGGATCCAGCCCAGTGCCAGGGTCAGGTGGACCTGACAGAGGACCTGAGCAAGCAGCTAGAGGACATCATTAGTACCTACCAGGAGGCCAGTGAGGAGCCTGCTGAgcaggaagaggtggaggaggaggttcTGAAGGAGCAGGTCACCAAGACCTCCGCCAAGGACCAGAAACTTGAGAAGAAGATGCTGAAAAGCCTTGGCAAAGAGGCCATGCTATTGATGCAGAGCTTGAACAAGCTCGGCACTCCAGAGCAGAAACTGGAGGCCATCATCAAGAAGCACGCTGATCTGctgGAGGAGCACCGGGGTGACCAGAAGCAGCTGAAGGTTCTGCAGAAGAAGCTTCTTCAGGTGATGAAGGAGAAGGACCAGCTTCAGAGTGAACACAGCAGAGCGGTTCTGGCCCGCAGCAAACTGGAGTCTCTGTGTAGGGAGCTGCAGAGACACAACAAGACACTGAAGGAGGAGACCCTCCAGAGGTGCAGGGAGGACGACCTGAAGAGGAAGGACATCACCACTCACTTCCAGAGCACGCTGACGGACATCCAGGTCCAGATCGAGGAGCACAGTAACCGCAACACCAAACTCTGTCAGGAGAACAGCGACCTGGCAGAGAAACTCAAGAGCCTCATCTCCCAGTACGACGCAAGAGAAACGAACCTGGAAAAGGTATTCAAACATCGAGACCTGCAGCAGCAGTTGTTGGAAACCAAACTTGAACAGGCAAACATATTCattaaagagggagaggagaagcaCAAGCGAGAGAGGGATCATTTGATAAATAAGGCGGCACAGTCACAGGTGAAGGTGCAGATTCTGAAAGAACAAGAGGAAGGGATGCAGGCCCAGTTGTCCATGTACTCTGAGAAGTTTGATCAGTTCCAGGGGACTGTGTCGAAGAGCAACGGAGTGTACGCCAGCTTCAAACAGGACATGGATAAGATGACCAAGAGAATGAGAAAGCTGGAGAAGGAGTCTATTCAATGGAAAAGCCGTTTTGAGGGCTGCAACAAGGCTCTTATTGATATGCTCACAGACAAAACCCTGAAGGAAAAGGAGTTTGAGCTGTTCACCCTGAAGACCCAGAAGCTGGAAAAACTGTGCCGGGCgctgcaggaggagaggaacagtctcTCTCATAAGCTCCAGGAAGCAAATCCAGCGGCTGCCACCAATGTAGCGGAGATGAAAGAAAATGAGACAAAGGAGAACCCAGAGGTACCTGCTGCTGAGAAGCCCATTGAGACACCCTCTGAAAACCCCTCGAAAGAAAGCCCTACTCTCAAAGTACCTGTTGCTACAGAAACCCTCGCAGTTGTAACTCCTGCTCCGGAAAAACCTGCTCCTGCAACACACCTGACCAGCGAGCTGGATAACCTGAAGGCCCAGAAGTCCCGTCTGCAGGAGATTCAAATGTCGTTCACCCTTTCCAACATTGTGCCACCTGAGTTCTTTGACCACGACGAAGAGGAGGAGACCACCACAGAGCCACATGGACACAGGGAGGCCCCAGAGGCCAGTAGTGAGGCCAGCAAGACCCCAGAGGAACATCACATAGAGGGGTGTAATGGAGACAAAATGACAGAGGAGACCACTGgccctttttcttcttcttctgcagcAGCTGAAGGACACGAGGCCCAGGAGCAGAGAGATAGGGAACTGGAGACAGTTGACTAG
>XM_021573729.2
GGTCTTCTGCACAGCTGTTTTATCTGTGGGGCCAGAGTTAGagcaccccctccccctctccctctcttacccccCTCTTCACGTTTCCTTTCCCCTCTGCTAGATCCTGGACCTTTTGTGCAAGCCTTTCAGAATGGAGACATGTCAGGTGAGTGACCAGGTGGATCCAGCCCAGTGCCAGGGTCAGGTGGACCTGACAGAGGACCTGAGCAAGCAGCTAGAGGACATCATTAGTACCTACCAGGAGGCCAGTGAGGAGCCTGCTGAgcaggaagaggtggaggaggaggttcTGAAGGAGCAGGTCACCAAGACCTCCGCCAAGGACCAGAAACTTGAGAAGAAGATGCTGAAAAGCCTTGGCAAAGAGGCCATGCTATTGATGCAGAGCTTGAACAAGCTCGGCACTCCAGAGCAGAAACTGGAGGCCATCATCAAGAAGCACGCTGATCTGctgGAGGAGCACCGGGGTGACCAGAAGCAGCTGAAGGTTCTGCAGAAGAAGCTTCTTCAGGTGATGAAGGAGAAGGACCAGCTTCAGAGTGAACACAGCAGAGCGGTTCTGGCCCGCAGCAAACTGGAGTCTCTGTGTAGGGAGCTGCAGAGACACAACAAGACACTGAAGGAGGAGACCCTCCAGAGGTGCAGGGAGGACGACCTGAAGAGGAAGGACATCACCACTCACTTCCAGAGCACGCTGACGGACATCCAGGTCCAGATCGAGGAGCACAGTAACCGCAACACCAAACTCTGTCAGGAGAACAGCGACCTGGCAGAGAAACTCAAGAGCCTCATCTCCCAGTACGACGCAAGAGAAACGAACCTGGAAAAGGTATTCAAACATCGAGACCTGCAGCAGCAGTTGTTGGAAACCAAACTTGAACAGGCAAACATATTCattaaagagggagaggagaagcaCAAGCGAGAGAGGGATCATTTGATAAATAAGGCGGCACAGTCACAGGTGAAGGTGCAGATTCTGAAAGAACAAGAGGAAGGGATGCAGGCCCAGTTGTCCATGTACTCTGAGAAGTTTGATCAGTTCCAGGGGACTGTGTCGAAGAGCAACGGAGTGTACGCCAGCTTCAAACAGGACATGGATAAGATGACCAAGAGAATGAGAAAGCTGGAGAAGGAGTCTATTCAATGGAAAAGCCGTTTTGAGGGCTGCAACAAGGCTCTTATTGATATGCTCACAGACAAAACCCTGAAGGAAAAGGAGTTTGAGCTGTTCACCCTGAAGACCCAGAAGCTGGAAAAACTGTGCCGGGCgctgcaggaggagaggaacagtctcTCTCATAAGCTCCAGGAAGCAAATCCAGCGGCTGCCACCAATGTAGCGGAGATGAAAGAAAATGAGACAAAGGAGAACCCAGAGGTACCTGCTGCTGAGAAGCCCATTGAGACACCCTCTGAAAACCCCTCGAAAGAAAGCCCTACTCTCAAAGTACCTGTTGCTACAGAAACCCTCGCAGTTGTAACTCCTGCTCCGGAAAAACCTGCTCCTGCAACACACCTGACCAGCGAGCTGGATAACCTGAAGGCCCAGAAGTCCCGTCTGCAGGAGATTCAAATGTCGTTCACCCTTTCCAACATTGTGCCACCTGAGTTCTTTGACCACGACGAAGAGGAGGAGACCACCACAGAGCCACATGGACACAGGGAGGCCCCAGAGGCCAGTAGTGAGGCCAGCAAGACCCCAGAGGAACATCACATAGAGGGGTGTAATGGAGACAAAATGACAGAGGAGACCACTGgccctttttcttcttcttctgcagcAGCTGAAGGACACGAGGCCCAGGAGCAGAGAGATAGGGAACTGGAGACAGTTGACTAG

Function

NR:

description
beta-taxilin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573730.2 False 1822 mRNA 0.51 9 26655013 26660529
XM_036954524.1 False 1753 mRNA 0.52 10 26655113 26660880
XM_021573729.2 True 1846 mRNA 0.52 10 26655113 26661730

Neighbor

gene id symbol gene type direction distance location
LOC110497568 LOC106603844 coding downstream 103 26651469 ~ 26654910 (-)
LOC110498692 LOC106603236 coding downstream 14479 26617454 ~ 26640534 (-)
trnal-cag-28 NA coding downstream 41562 26613369 ~ 26613451 (-)
LOC110497562 LOC106603201 coding downstream 328143 26313358 ~ 26326870 (-)
LOC110497555 LOC106603151 coding downstream 392131 26229014 ~ 26262882 (-)
LOC110497570 LOC106603258 coding upstream 8066 26669796 ~ 26680308 (-)
fuca2 LOC106603269 coding upstream 29399 26691129 ~ 26706187 (-)
LOC110497574 LOC106603280 coding upstream 61952 26723682 ~ 26735552 (-)
LOC110497579 LOC105015404 coding upstream 121768 26783498 ~ 26791128 (-)
LOC110497578 scml4 coding upstream 129642 26791372 ~ 26808704 (-)
G1608672 NA non-coding downstream 40589 26614211 ~ 26614424 (-)
G1608574 NA non-coding downstream 42789 26611107 ~ 26612224 (-)
G1608575 NA non-coding downstream 44857 26609397 ~ 26610156 (-)
G1608653 NA non-coding downstream 73656 26580826 ~ 26581357 (-)
G1608643 NA non-coding downstream 82406 26572360 ~ 26572607 (-)
G1608712 NA non-coding upstream 36962 26698692 ~ 26963299 (-)
G1608763 NA non-coding upstream 105121 26766851 ~ 26767159 (-)
G1608804 LOC106603381 non-coding upstream 194513 26856243 ~ 26857489 (-)
G1608863 NA non-coding upstream 373572 27035302 ~ 27037775 (-)
G1608904 NA non-coding upstream 401997 27063727 ~ 27065477 (-)
G1608576 NA other downstream 44030 26584938 ~ 26610983 (-)
G1608529 NA other downstream 227710 26424031 ~ 26427303 (-)
ston2 ston2 other downstream 821636 25825790 ~ 25876073 (-)
dio2 dio2 other downstream 968911 25678207 ~ 25686102 (-)
G1606398 NA other downstream 1259801 25382760 ~ 25395212 (-)
shprh shprh other upstream 249667 26887874 ~ 26912468 (-)
G1608844 LOC106603413 other upstream 276140 26937870 ~ 26941380 (-)
G1608988 LOC106603498 other upstream 534018 27195748 ~ 27201735 (-)
G1608992 NA other upstream 544500 27206230 ~ 27207354 (-)
nkx2.9 nkx2-8 other upstream 1216731 27877963 ~ 27879920 (-)

Expression


Co-expression Network