fbxo30a (LOC106603398)


Basic Information

Item Value
gene id fbxo30a
gene name LOC106603398
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 26864882 ~ 26872820 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573763.2
GTCCGGGTCCGCTGAATGATGACGCAATCAACTTGCGCCACTTGTAGATATTAGCAGCTAGTCACAGATGAGCTTGATAGCATTTTACAGCAGAAGTCACAATAGTGACTCGAGGCGGAAGAGACGACGTCAATATTTGTAGCTGACTAGCTAGCTGCTACAATATTACCTACCGAACTTTTAGTTAATTGTGTGTGGCTAGTGTTACTGCCGAATATAAGGACAAGACTCAGATATCAACGATTTGCTGTATCGTTATTTAATACGGGGCAGACCACTTCAGTCATTCCTCCTTTTAAATCTAGAATATCAACACCACAAAGATGGAGGCGCTCCATGCCCACTGCATGAAGTGTGTAAACCGGAGGTGTATGATCCGCCCAGAGACTGGTGTGTCCTGTGATCTCATTGGCTGCCCTCTCGTCTGTGGAGCTGTCTTCCACTCCTGCAAAGTGGAGGAGCATCATTTACTATGCCCGTTTGAAAGAGTGCCTTGCCTCAACACTGGATTCGGGTGCCCTTTCACTATTGCTCGGCTCAAAATGGCTGAACACCTAGAGACGTGCCCGGCCAGTGTGGTGTGTTGCACCATGGAGTGGAACCGTTGGCCTGTGAGCTATTCAGACAGGAAGTCCTATGAGTACCTGAGCAATGTTGAAGTGGTGGAGCAGCTAGACATGGCCCTGGCTCTCCAAGATCAGAGGATGCTACTGGAGTCCCTCAGAGTCACCACCAACACGTCAAATAACGGATATAATAAACCAGCTGTGGAAACAAATGAAAAGATGGCTGATGTTGTGTCAAGTGTACCAGAGACTGCAGTTAGTAATGGAATGGTTGAAATGGATGAGGCTGCTGCTTTGACTAATGGAGTGATTGAAATGGATGATGAGGAGTCCTATATTTCGGTACACAAAAAGAACTTAGCAGCGACCTTGGAAGTTCTCAGAAGTGCAAAGGACGTCAACTTGATCAATGGAATTATAAATGGGGAAAAAACAGAGCGAAATGGGGTTCTCCATAATGGAGAGAACAGTGATGATGACTTGAAGAATGTAGAGATGAAGGAGAGTGGCACACAGTTGGACTGTGAGCTCGGAGCAGTGGGCGGAGTGTCCGTGGACTGTGGAGTCGGAACAGGCAGACAGGGAGATGAGAGCCACTGGATAGAGCTCGATGAACTAATCAAGTCttcagaggaggtggagaaggacgGCATGATGGGTCTAGCAGAGGTGGGTCGTCCTCCTCTCAGTAACGGTTTCCACCATACAGGAGACGACCACAATCACTTGAGGCGACGTGAGCGGATGGATCTGAGCAGATCTCCACCCAGACGCTCAGAAGTCAACAGGTCTTCAGACTTCAGGCCGGTGATGCCTTATCTCTCAATGCCTAATATAGTAGCACCACGGGAGCCCTCTGggccccaccctccaccactacccATCCACCTGCCTCTTCCCATGCCTCTCCCTAATCTGGAACCCTACAATGTGCTCCAGCACCTGCCCTTAGAGATCGAAGATAGGTGGCTGGAGAGGAAACTACAGAACCTCCAGGTGCTCCGAGGGATGAGTGTGTTTACGTTTAACGGGCGCAGGGCTATGATGTCTGATCCCTATTTGTTCAGAGCTAAAATGGAGGACAAGTCAGTGGACACCTCAGACCTGGAGGTAACTGACGATCCATTGGGGCTCCATGGGATAGACCTGATCACGGCAGCGCTGCTTTTCTGCCTGGGTGATTCCCCCGGGGGCCGCAGCATCTCAGACAGCAGGTTTGTAGATGGTTATCGCGTCGACTTTGGTACCCAGACCTTCTCCTTCCCCTCGGCAATACTGGCCACTAACACCATGGTGGGGGACATCGCCTCAGCGTCGGCCTGTGATCACGCCAGCCCGCAGCTTTCCAACCCCAGCCCCTTCCACACCCTCAGACTGGACCTGGTGCTGGAGTGCGTGGCCCGCTACCAGACCAAGCAGCGCACCATGTTCACCTTTGTGTGTGGACAGCTGTTCCGCAGGGATGAGTTCTCCTCGCATTTCAAAAACGTTCACGGGGACATCCACGCCGGCCTGAACGGCTGGCTGGAGCACCGGTGTCCCCTGGCCTACTACGGCTGCACCTACTCCCAGAGACGCTTCTGTCCCTCTGTGCAGGGCTCCAGAATCATCCACGATAGACACCTGGGCTCGTTCGGGGTGCAGCCGGGTATGCCTCCCCGGTTCGGAGATAAAACTCTCCCCAGGAATGCCTGTCGGTTCGGCTCCACCTGCGACCACCTGAGCTCCCTGCCCTTCGAGGTGCAACAGTATGTGGCTAGTTTCCTGGATGGCTTCAGCCTGTGCCAGCTGTCCAGGGTCTCGCGTACCATGAGGGATGTGTGTGGCAGCTTACTCAAGTCCAGAGGCATGGTGGTGCTTCTCTGGGAGAACACACGACGGGCAGATGGGTCTTCCTCATGGCAGATCCAAAACAAGGTGTGGCGATTCAGTACGGCTTTCGGTACGGTGAACGAGTGGAAGTTTGCCAACATCGCCAATATGGCCGAACATCTGAAGAAGTGCAAGTTTAACACCATCACCCGTCGGGACGAGGCAATCCCTCTGCCCTGCATGTGCTTCACCAGAGAGCTCACCAAAGAGGGACGCTCACTGCGCTCAGTCCTCAAGCCAGTATTATGAGTCGCCCTATAACAGGGTTGTAGTCCATGGGTATGTCTGAATtggcattctattccctatatatagtgcactacctttgaacaGGGGCCATAGAtatagagcggcaggtagcctagcggttaagagcattaagccggtaactgaaaggtcgctggttcgacaATGTGGAAAATctgcccttaagcaaggcacataattgctcctgtaagtcgctctggacaagagcgtctgctaaattgcTATTAAATTGAAATGTAGGAATAAGGCTGCCATTTTTGACTATGCCCATTTAATTTCAGTCCATTCAGGAAGTTtttactgaattgaaatggactCCCAACCCTGCTTTTTTTTCCCAGCCTTGACAGAAAGAACCTGAATTGTTTTCAATGTTTTGTAATGTCATATTGTTACCAATGTACTGAAGAGATGAACTTTTACATACTCTGTCAATGtgtaaataaaacaaatgttacTTTATTTTTATATGAATAACTAGCAAAGTCAGTACTGTGCCACGTTGACAAAGAAAGAAAGTGGAGCCTTATGATGAACACTTGCTTTCTGGTCATACGAGGGTTCTGACGAAGACCTTTAAAGAGATTTTTCACTAACTCCCAGCTAGAGCGATTTACACCATCTTATTGTCGTGCACGGTTTTACATACTTAGGGTCATCATGGTTTGAGTTAGCGGATAATGTCAGTACCTTATCTGAATTTTAAGATTCAGACAACTTAATGTCCACACTACAGGCCATTATCAGAATGGAGCATTTTACTATGTAGCTATTTAACTCTACAACCAGTATCAGACCGGGCAACAATGAAGGGTGATTGGTTGTCTTTTATCTACTTTCCTAATTTGAGAAATGGTACTTCTGTGAAAACCATTTGTGTGAATACTAGTTATTGGATCTGTTTGAGTCCAGTGAATCCTGCAGGTCAGGGAACGTGGGCATACCGTCGCTTCTGGGGATGAGAGTTGATCAGTATTGAAACTGATCATGGCAACTAATAATCAATCATGGTCCTGTCTATAAGTTGTCATTTTAGTGTTCATCTTTATATTTTCCTCTTGGCACTACGTAGACACTGCTCAGAAGTTGCCTGCTGTGTCTCAGGGTTTGTAAAACATGCCTACCTCCAAAATAAGACCCTATtcccctatatggtgcactacttttgacaagggcccattttagggctctggtcaaaagtagtgcactataaagggaatggggtgccatttgggatgcagacaagaCGCTGTATCAATAAGTGCTGGCCATTACTTGTACTGTATTGCCTGCTTCACACGACAGGTTCCACCCAAACTGTACTGTACAGCTCTGCTTGGTTTTTGGTTCGGCTCTAGAGTGTGAATCAGGCTCATGTGTAAAAGATACACCAATCTACCAGTCTTCACATGGAACAGTCACTTTAAAGTCATGGTTATAGAGTGGGGTTAGTCAGGACTGATATACCGGTCAGTATTATTGTGTTTTATGGCAGTGTTGGTACTGACACATTAAATTCCATGTCCTCAATAGATGTAATTATCAATAACCTACCCATCGTTTGACTTGATTTTTCTCTGAGTTGAGTATTAGTTGAAAATCTGTTTGGATTTGGAAGTGTGTAGAACAAGATTGAATTATTCGGACAGATTGTGCTGTAGAAATgaaggctgggattcaatccgaTCGCGAGTTGTAGACAATGCAGCTTTTAAAGGCTATGTTCGGAGCTCGCATTcctggtaaacgctgcatatattGTTTCAATTAAGTGGTACATTGCCGATAAAGCGTAATCGGATTGGAGTCCAGCCTTAGTTCATGGGTCTAAGATTCTGTTGTAGAAAATTGAGGGCCAGACTTGGATCTTAAGGGCATAGTTTGCatcctgttaaaaaaaaaagaagtaaaaGACAAATCACTTTATTTGACCTTAAGTCCTTCTTCTCTGAATCCCTGTACAGTTTATTCTACAGTTGTAttccatttggggggggggggagaccggTGCAGACTTTGCATGGTTGAAAACATGATTAGCACCCCAGATGGATAGTTTgaaacatttttttgtgtgtgttcgcTTCCAAAATAGGCATCAATCCTGCGTGTGTTTTGTGatattttatttgtattgtcAGAACTCAACTCTTTTTGTATTCTTCCATGCAACCCTTTTTTTTGAATGTCCTTCTATTATCTGGTGTAGTTTCTAATCTGATGAACATGCCACAAATATTAGACTGTTCAGAGGATGCTATGGTTTAACCTATTGATCATCCCCACATTATAGCCCGGGCCCAGATAAGTTTGTGCTTTTTAGCCAAGTCAGATGGTTAAATTCCAATGACTGTAGGCAAAACGGCataaacagatctgagaccaggcaaACCATGTTTTTGCTCAAGtcagatttttttccccctgcaTGTGAGTGAAGAGATTAACAGTCATTCTTAACCTGATTTATCCATAAACTGTAAGGTTATGTTTCCTCTACAATAACCTTTTTAAAGGTTGTGTGTGTATTGAGCCTGGATACACTGGGCCTATGTAGTTCTGTCTCAACTCTTCATATTTGGTTTGTCTTACTACATTTGTATGGTAGCATCTGCAACAATGAGATCACACCAAGTTATAGCTTTAAACAAGGTGTTTTACAATGTTTTTGTTTCTTGTTTTAGCCGCCCAGGTGTATAAAGGTCCTTCGCATACTGTGTATCATTTTCATCACCAATAAACGTTTGTTTTCATTA

Function

NR:

description
F-box only protein 30-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10307 FBXO30; F-box protein 30

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573763.2 True 5461 mRNA 0.46 3 26864882 26872820

Neighbor

gene id symbol gene type direction distance location
LOC118941467 LOC100194722 coding downstream 19894 26842012 ~ 26844988 (-)
LOC110497578 scml4 coding downstream 56178 26791372 ~ 26808704 (-)
LOC110497579 LOC105015404 coding downstream 73754 26783498 ~ 26791128 (-)
LOC110497574 LOC106603280 coding downstream 129330 26723682 ~ 26735552 (-)
fuca2 LOC106603269 coding downstream 158695 26691129 ~ 26706187 (-)
LOC110497584 LOC106603407 coding upstream 130 26872950 ~ 26887740 (-)
shprh shprh coding upstream 15054 26887874 ~ 26912468 (-)
LOC110498695 NA coding upstream 258889 27131709 ~ 27139457 (-)
trnal-uaa-59 NA coding upstream 280798 27153618 ~ 27153700 (-)
LOC110497590 stx11 coding upstream 282312 27155132 ~ 27161015 (-)
G1608804 LOC106603381 non-coding downstream 7393 26856243 ~ 26857489 (-)
G1608763 NA non-coding downstream 97723 26766851 ~ 26767159 (-)
G1608672 NA non-coding downstream 250458 26614211 ~ 26614424 (-)
G1608574 NA non-coding downstream 252658 26611107 ~ 26612224 (-)
G1608575 NA non-coding downstream 254726 26609397 ~ 26610156 (-)
G1608863 NA non-coding upstream 162482 27035302 ~ 27037775 (-)
G1608904 NA non-coding upstream 190907 27063727 ~ 27065477 (-)
G1609001 NA non-coding upstream 359471 27232291 ~ 27291107 (-)
G1609062 NA non-coding upstream 511657 27384477 ~ 27387965 (-)
G1609081 NA non-coding upstream 545122 27417942 ~ 27418188 (-)
G1608576 NA other downstream 253899 26584938 ~ 26610983 (-)
G1608529 NA other downstream 437579 26424031 ~ 26427303 (-)
ston2 ston2 other downstream 1031505 25825790 ~ 25876073 (-)
dio2 dio2 other downstream 1178780 25678207 ~ 25686102 (-)
G1606398 NA other downstream 1469670 25382760 ~ 25395212 (-)
G1608844 LOC106603413 other upstream 65050 26937870 ~ 26941380 (-)
G1608988 LOC106603498 other upstream 322928 27195748 ~ 27201735 (-)
G1608992 NA other upstream 333410 27206230 ~ 27207354 (-)
nkx2.9 nkx2-8 other upstream 1005641 27877963 ~ 27879920 (-)

Expression


Co-expression Network