G1608578


Basic Information

Item Value
gene id G1608578
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 26563720 ~ 26567945 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1841344
TTGAATATTGTTATGGGTATTATTACCAAGGCGGCACGCCCCAGACTTCATATTAACAAAACATTTTCACTACTACAGGGTTtgaccccaaaaaatgtttttcctGAAGGGAGATCCTTTCACAGAAAGGACTATGGATACTTAGTGCAGACATACAGACACTTACTCGGTGTCAGTATGGccgtgtatatacagtgcatatcATAAGCAttcacccccaccacccccttggattttttttcacattttgttgagttaACAAAGTGGGATTGAACTGGATATAATTGTGATTTGTTGGTACATTTTTATcactaccccacacacacaattatgtgtaaggtctctcagtcgagTAGTgtatttcaagcacagattcaaacacaaagacAAGGGGGCTTTTCCAATGACTCACAAAGAATGACAcagattggtagatgggtaaaaagcaGACacagaatatccctttgagcatggtaaagttattaattaagcTTTAGATGGTGAACCAATACACCCAAgacacaggtgtccttcctaataACGGAGTTGCCagcagaggaaggaaacagctcagggatttcaccatgaggccatttaaaaaaaagtaacaacgtttaaaggctgtgatgggagaaaactgaagctagatcaacaatattgtagtaactccacaatactaccctaaatgacagagtgaaaaggctCTAAACAATTCATACTGCAACAAATGTGCCAAAGGACTTTTTGCTCTGAATAagttttatgtttggggcaaattcaatGCAACACATCGCCAAGTACTatgctccatattttcaagcatggtggtggctgcatcatgttatgggtattcttgtcattggcaaggattagggagtttttccacaggcaaaatcctagagaggaacctggttcagtcttctttccaccagacactgagagacaaatgcatctttcagcaggaaaataacctaaaacacaaggccaaatctacactgcagttacttaccaagatgttcctgagtggcctagttacagttttgacttaaacctGCTTGAAAAGctaatggcaagacttgaaaatggctgtctagcaatgatcaacaaccaacttgacagagcttgaagaagttTGAAAGAATAATGtgaaaatattgcacaatccaggtgtgcaaaggtctaagagacttacccaaaaagtctcacagctgcaatcgctgccaaaggtgtttctaacatgtattgttaGAAGTTACATATTTATCTAATCAAGACACActgtccatgacatagactgaccagttgaaagctatgatcccttagtgATGTTGCCTGGTAAACCcacatcaatcagtgtagatgaaggggaggagacatgttaaagaacgATTTGAGACAATTGAGTCATGGATTGTGAACTtgtgcaattcagagggtgaatgggcaagacaaaagagcctttgaatggggcatggtagtaggtgccaggcgcactggtttgagtgtgtcatcatgaactgcaacgctgccgagtttttcacacaacagtttcccatgtgtatcaagaatggtccacaacccaaaggacatccagccaacttgacagcactatgggaagcattggagtcaacatgggccaacatccctgtggaacgcttttgacaccttgtagagtccatgcccaaaaaattgaggctgttctgaaggggAAAAAACAGGGTGAAACTCAATTTTAGGAAGGTGctctgttttgtacactcagcgtatATGTGTGTCCTATTTTCCATGAATTCAAATGTAcatgagtattttgtgtagatcattgacaacaATAAATTTTGAAGAAATCCatgggggctgaatacttatgataTGCACTGAAGCCTAAGTCACCAGAGTAGAGAGTTTATCCGAATGCAAAAGTTTTCAGGTTGTGATTCTGTTTTTATGGCTATGTACCTGGACACACACTGGGTTAATATATCACCAATAATCTACCAGAAAACGATTCATTTCAACATGTGAACAACCTTCTTTCTGTTTCTCAGATACCCAATATTAATGAGTTGGAATATAAACTGTTACAGCGTTAATTTTTGCTTTGAAATCAGACAATGATATCAAATTCATAAGTGAATTAATTATTACACAtttctttccaacaattgtttcttGCTGCCTTGGCCTGATCTGTGTTTCTAGGCCAAGATGCTTTGCTCTGTGGTTCTAGGCCAAGATGCCATGCTCAGTATTCTAGGCCAACGTGTCCAGCTGATGAGACCAGCTGTGAAGAGAAGTGAAAATGTCAGGTCTCTCCACTGTACCACAGCAGAGCTGCTTCTGAAACATTCTAAAGGTTCCAGAAGTGTTTTAGAGGGCTCTAGAATGTTCTAGAATAAAGATCTCTGGAGCAGCAATGGAAAAGCTCAGCTAGAATGTTGATCCACACTGACAAATTATTGCTTAACTGAGGCACACAGTAGTTTTGAATTCCAAGTACATATTGAAGTAGTAATTTTTTGTTCATTACTCTAGCGATATTAAACCATGTGAATGAGGTTTGGAATTCAACTGTACATGCCTACTGTACTATCACTACACATAAAACGAGGAGGTCACTGAAACGGTCTTCTCAATAAGGTTTACTGACTGGGGTAGAAATGCAAAAGTACTGAATGTAAAACAAATTTGGAAGACAAACGCTAGATTCAATTTACATTGAGTAGGTACGGTTCGGAGATTTAAGAGTAAGAAATCTCTATGACGATAGCGAATAAAAGAGGCAAGAGAGGGCAGTCTTGTCTGTTTCTACACTTTAACAGAAAGTAATGTATAAGAAATCTAACTTTATATTTGTGAAGTGTTGGGTTTCACACCTTGCCTCTTGGCCAATTAAACGGATTGTTATCAATGTTCTTCAGCTACTGTACGTTGAAATCACGACTATACCTGGGTAAAAAAGGGCCCAATATTGAAAATAAGTGAATTTGGTGTCACAGGGTTGTAACACTGTCACATACACTCCTCGGACAGTTCATTAGGTACATCACAGCGTCTAGGGTTTACATCCAGTCAGCGGaggtcctgtgggcgaaaacagctcggTGACGACGGAGGTCAAAGGAGAAagaagaatcgtgcaagctaacaggcgggccacaaacagataAATAACAGTAcaacaacagtggtgtgcagaccGGCACAACGGAATGCACAACTCGtcgatccttgtcacggatgaGTTGGAACGGGCTGTTTGCAGCATAAATGTACCACCATCCGATCTGCAGCAACAGGCGTGATGCCATTGCgaggaccaacatccctgtggaatgtttccGACACCCAAAGTATTTGGGCtcttctggaggcaaaggggggggtCTGACCCGGTattagatgggtgtacctaataaactctCCGGTGAGTGTACTTTGCTTATAATACTGACACACACCAACTGCACACAAAGAATACCTTTTCAACATATACAACGAATCTCACTGTTCTAAAACACCCCATACAAAAAATATTACACTTTCTACTTCCAATCAGCTAAAATGATCAAATGAAAGAAACAAATGTAACAAGTTCCAATTTAAAATAGTTAtcgagacaaaacaaacaaaagacagttttaaggACTAACAAAGACAGCCGAGTGAAAAAAACAATAAACTACCAACATATAGAAAGAACAAAGTGAAAATGTCAGTTTCATAGCTGGCCTAAAGCCAACCCagctccattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattacatcTTACAGCTTTCCTCAGCtctgtacacagacagacaggtgagggCATGTAGAAACTCATCCTGCCCCAAGCATCAGACCTGGCACAGCCAATGATGTAGTCAGGAAGTCTTGAACCAGCTCATGACGTCATCTGGGCTACTTTTCACATGACAGGAACCTAACTACCACAGATTTAAATAAGTGCCACGTTTAACATAAAGCTAGGCTAGGGATGGTAGATGACATTAGGGTAATCCCCTTCATTGATTATTGGTTAATCtgctaaaactgtttgaataatgatGTTTAAACTCTGAAGTCAATGATTAAAAGTCCAATgtatttttatctcaatatcaaatcatttctgggtaacagttAAGTAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1841344 True 4170 lncRNA 0.40 3 26563720 26567945

Neighbor

gene id symbol gene type direction distance location
LOC110497562 LOC106603201 coding downstream 236850 26313358 ~ 26326870 (-)
LOC110497555 LOC106603151 coding downstream 300838 26229014 ~ 26262882 (-)
efcab11 efcab11 coding downstream 420368 26057106 ~ 26143352 (-)
foxn3 foxn3 coding downstream 555477 25893224 ~ 26008243 (-)
ston2 ston2 coding downstream 687647 25825790 ~ 25876073 (-)
trnal-cag-28 NA coding upstream 45424 26613369 ~ 26613451 (-)
LOC110498692 LOC106603236 coding upstream 49509 26617454 ~ 26640534 (-)
LOC110497568 LOC106603844 coding upstream 83524 26651469 ~ 26654910 (-)
LOC110497567 LOC106603250 coding upstream 87068 26655013 ~ 26661730 (-)
LOC110497570 LOC106603258 coding upstream 101851 26669796 ~ 26680308 (-)
G1608577 LOC106603225 non-coding downstream 1277 26561631 ~ 26562443 (-)
G1608639 LOC106603225 non-coding downstream 4494 26558944 ~ 26559226 (-)
G1608638 NA non-coding downstream 5035 26558454 ~ 26558685 (-)
G1608635 NA non-coding downstream 8690 26554828 ~ 26555030 (-)
G1608630 NA non-coding downstream 14635 26548436 ~ 26549085 (-)
G1608643 NA non-coding upstream 4415 26572360 ~ 26572607 (-)
G1608653 NA non-coding upstream 12881 26580826 ~ 26581357 (-)
G1608575 NA non-coding upstream 41452 26609397 ~ 26610156 (-)
G1608574 NA non-coding upstream 43162 26611107 ~ 26612224 (-)
G1608672 NA non-coding upstream 46266 26614211 ~ 26614424 (-)
G1608529 NA other downstream 136417 26424031 ~ 26427303 (-)
dio2 dio2 other downstream 877618 25678207 ~ 25686102 (-)
G1606398 NA other downstream 1168508 25382760 ~ 25395212 (-)
sptlc2a sptlc2 other downstream 1706999 24847088 ~ 24908731 (-)
G1608576 NA other upstream 16993 26584938 ~ 26610983 (-)
shprh shprh other upstream 343452 26887874 ~ 26912468 (-)
G1608844 LOC106603413 other upstream 369925 26937870 ~ 26941380 (-)
G1608988 LOC106603498 other upstream 627803 27195748 ~ 27201735 (-)
G1608992 NA other upstream 638285 27206230 ~ 27207354 (-)

Expression


Co-expression Network