G1608844 (LOC106603413)


Basic Information

Item Value
gene id G1608844
gene name LOC106603413
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 26937870 ~ 26941380 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1841644
TTCAATAATGTGAACGACAATGACTGTTTGCACGACTGTGTTTGATACATGTTGTAAAACAGAAAACATGATTGAACTCTATGAAGGCATATCTATCAAATAGCCTATTCATGTTACTAGCCATTGTTTATTACATTATATATAGTGAGATCATAACAATTGGTAAAAGTAAGAATTTATACTGTACAAACCCAACAGTCACTATAAGCAACACACTTATAAATGGTAAAATAAACGCAGTAATTCCTTTTAGTAAAACTAATCTGAATCGTTACCAAAATAGGATgcatactactacatactgtacattcacaAAAGTAACAAATTACATGTTTGgcagtcatattataatagacactgTTGCAAGTATGGATTTAGAGGAGTGTTTATAAAATAGACAAGACTTGCAATAGAAATGAGagacattttaaaaatgtttttctgTAAATGGAAGCATACCGGATTCATGGCACTTGAATCCTTCTGGTTTTTGCTTGCTACATtcttacagtagttagttattgtatctGTATAATATATTCATTCTGAAGTTATCTGATGAAGAAAGTGACTGTGACAATCTCTGTGATTTTTTTCTTCTGAATAATACATACTTCATTTgagcaaaaacaacaaaacacattcatctAGAACATTTTACATTGTAAGGTTATAACTGTATTAGAAAACATGGGCCTACACAGTGCACACATTATTTATAGACATGTTTGTGAACTACAGGTTGGATAGTCTATTATGATAAACAATCTACTTTCAAGTGGTGGAAGTTTGCCTTAATGAAAACAAGCAACAAACACAACCATTATTGTAATACCTGATGATGGTCAAATTCACACTGCATTGTACCCTTAAAATAACTGCTACTTACATGACTTCAATAAGCTACACGAAGAAGACTATCTTAGCTTTTTGCTTTCCTAATAAGACACTGAGCAACTTCAAAGCTGTTCATCTCTTGCATAAACATGGCAATACATTTTGCAACAGGTTAAATCTTTTCTTTGTGATATTTATTATACAACAATAAGACCTTTTAAAAGTGTGTCCTGTGCTTTTTTTGCTCACTTTCATCCCTGTAAACACACACTTTTGCTCATAGATTTCATGAGTCAACCAATATAGTCCAGTCAATCTCTCAATAAAGTTTTCAAGACATTTTGACCATTTCTTACTGGTCATTAAATGGAACACAAATAATATGCTACAAGTCATCAGCTACAAAATGGCTCTATATTATTCTACCATATCTACAGTACTCGTTCACAGCGTTGAGCTTTGTGTGTAATCCTTCAGAACGACGGAGGCATAGTTTGGAGGGGTGCACAATATGGACTCGGACACGGGTGAGGCGTTATGAAAGGGGCTCCCCATGCTCGCTGTATCACGAAATGGGGAGGGGGGCATCAGGGCCAAAGAATTCTCCGTTGCTAATTTGAGCTGAACGAGGTCGTCGTCCTCTTCTTCTTCGTGAATCAGGGCGTTGTCATACATGTATCCATGGAGGAGGCCAAACCGCTCGTTCTCCACCACTACATCCTCctcaatctcctcctcctcctcatcctccatctCCAGGTGGGAGGTGTGCTCCTCGTCGTCGAATGAGCCAAGGTCTAGTTGCAGGGGCAAGACTGCATGCTGCTGGATGAGATGAGCCTGGTGGTACACAGGCCTGCCATGACTGCTCCCAGACCTGCCCCCAAAACCCTCACCACCACCAACAGGGCTGGGCGGAATGATCATGTCCATATCATTGAGCTCAGGGATGATGAAATCACTGTTGTACTTGCCCACCACCTCCTGTAGCTGTAGGTGGTCCATGATGACTCTCTGCTGGGGGATCACTCTGCTCTGTGGCAGGTGCGGGGGCATGTGCTCAACAGGAGGGTAATATTCAACCACCTCCTCGTCCACCTCTTTCATCGGCCCACCAGTGGTGGGCATTATCTGCCCATGGGCCATCATGTGGGGACTAAGGGGAGGATTGTATCTGACTAGGTCGCTCTCGTCCTCCTCGGCTACATTGTACAGAGTCTTGGTGCTGAGGTCAGAGAACTCCATGGCCATGCTGCTGCCTGTGTTATGGTAGGTGTTAGTTAAGGGTCTGATGACGGCCATCTGATTGGAGCATCCTGCTTCCTGTCTCTTCACGTGCACAGACAGTCTTTGCCAATTGTGCTCCCCTTTTGGAGCATGATGTCTTGCACCTGGTTCAGACTTCTCAGAGTTCTTCTTCCGTTTGAACATGTCGAGCAGGCTGTTGCTCCGGCAAGCGATATTGCCGTCGCCGACGTGCATGCGCACTACATCTGAGGTGGTGAACGCGCTGCGCACATTCCGCTCCGGCTTGGCGAGGATGATATAGATCTTTGGTGAGAACATACAGCCCAATGCCACAGTCACACTCAGGCTCACTGAGAACGATGTGGTGATGATCTTGTAGTTAGAGCCAAAGTAGATGGGCACAAACGCCAGCCAGATTATACAAGTTGTATACATAGTGAAGGCGATGTACTTGGCTTCGTTGAAGTTAGCCGGAACGTTGCGCGTCTTGAAGGCGTAGTAGGTACAGCTCATGATGAGCAGGCCGTTGTAGCCCAGTGGCGCTACCATGCCCACCGTGCTTGTGTTGCAGATCAGGAAGACCTCCCTGATGCTGGGGTAGGACTTGACGGGCATAGGCGGCTCCAGGATGATCAGAGTAACCTCCAGGGTGAGCTGGACACTGACTAGGAGGCCGGCGATCAC

Function

NR:

description
metabotropic glutamate receptor 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1841644 True 2769 TUCP 0.44 2 26937870 26941380

Neighbor

gene id symbol gene type direction distance location
shprh shprh coding downstream 25402 26887874 ~ 26912468 (-)
LOC110497584 LOC106603407 coding downstream 50130 26872950 ~ 26887740 (-)
fbxo30a LOC106603398 coding downstream 65050 26864882 ~ 26872820 (-)
LOC118941467 LOC100194722 coding downstream 92882 26842012 ~ 26844988 (-)
LOC110497578 scml4 coding downstream 129166 26791372 ~ 26808704 (-)
LOC110498695 NA coding upstream 190329 27131709 ~ 27139457 (-)
trnal-uaa-59 NA coding upstream 212238 27153618 ~ 27153700 (-)
LOC110497590 stx11 coding upstream 213752 27155132 ~ 27161015 (-)
LOC110497591 LOC106603863 coding upstream 227527 27168907 ~ 27173184 (-)
syne1b LOC106603506 coding upstream 271904 27213284 ~ 27350889 (-)
G1608804 LOC106603381 non-coding downstream 80381 26856243 ~ 26857489 (-)
G1608763 NA non-coding downstream 170711 26766851 ~ 26767159 (-)
G1608672 NA non-coding downstream 323446 26614211 ~ 26614424 (-)
G1608574 NA non-coding downstream 325646 26611107 ~ 26612224 (-)
G1608575 NA non-coding downstream 327714 26609397 ~ 26610156 (-)
G1608863 NA non-coding upstream 93922 27035302 ~ 27037775 (-)
G1608904 NA non-coding upstream 122347 27063727 ~ 27065477 (-)
G1609001 NA non-coding upstream 290911 27232291 ~ 27291107 (-)
G1609062 NA non-coding upstream 443097 27384477 ~ 27387965 (-)
G1609081 NA non-coding upstream 476562 27417942 ~ 27418188 (-)
G1608576 NA other downstream 326887 26584938 ~ 26610983 (-)
G1608529 NA other downstream 510567 26424031 ~ 26427303 (-)
ston2 ston2 other downstream 1104493 25825790 ~ 25876073 (-)
dio2 dio2 other downstream 1251768 25678207 ~ 25686102 (-)
G1608988 LOC106603498 other upstream 254368 27195748 ~ 27201735 (-)
G1608992 NA other upstream 264850 27206230 ~ 27207354 (-)
nkx2.9 nkx2-8 other upstream 937081 27877963 ~ 27879920 (-)
plekhh1 LOC106602716 other upstream 1295216 28205649 ~ 28269202 (-)
crip1 crip1 other upstream 1700908 28642288 ~ 28650251 (-)

Expression


Co-expression Network