LOC110499061 (grn)


Basic Information

Item Value
gene id LOC110499061
gene name grn
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 16560848 ~ 16592647 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575935.2
GAACAGGCCATTGGTCATAAGGTGCGAATATCATGTGATAACCGTTGCTGGGAGAAAAAACATGTGAAATCACTCCAGATTGCAAAATACTCCAGCGTCGCTTCGAATGAAAGATAATTTAACTAGTTTGAGCTTTTACTTCGCACACTAACGAAGACTATATGAAGACTATGCATTGCAGTTCCCAACTTGAATAACACATCTGACGATATTCCCTCATCTACCCTCTTACTCTTCTCAGATTCTCTGAACACAATGATAGGGGTGGTGTGTTTGGCCCTCCTAGGCCTGACCTCAGCCCTGATTTGTCCCGATGGTGGGATGTGTGACGATGGCAACACCTGCTGCAAGACCCCCAGTGGTGGATATGGCTGCTGTCCATTACCAAATGCTGAGTGTTGTTCCGACCACCTGCATTGCTGCTATGAGGGGACAGTGTGTGACTTAGTCCACTCCAAGTGCCTCAATAAAACAGTCTCTCTGCCGTGGGTCAGAAGAGTCCCCGCACAACACATCATCAGCCCTCTGATGGTGGAGGGAGTGAGGGCAGTAATTTGTCCCGACGGCGAGTCGGAGTGTCCGGACGACACCACCTGCTGTCAACTCCCAGAAGGCTCCTGGGGCTGCTGTCCGCTGGCCAAGgcaGTGTGCTGTGAGGACAAGATGCACTGCTGTCCAGAGGGCACCAAGTGTGACCTAGCCCACTCCAAGTGTGTGTCTCCCACCCTGGAGACATTTGTCATGAGGGAAAAGGGGCCTGCAATGAAGAAGCAGACGGCAGTGACCTGCCCAGGTGGTACGAGCAGATGCCCAAATGGAACCACCTGTTGCCTGCTGACCAGTGGCGACTATGGCTGCTGCCCCTACCTGGAGgctgtGTGCTGTACCGACAAACTCCACTGTTGCCCTGGCAATACAACCTGTGACCTGGAGCATGATATGTGCACTTCCCCCAACACACAGACCCCACTGGCTAAGAAGACCCCTGCCATCTCCAACGATGTGGATTGCCCAGACAAGGTGTCATCGTGTCCTGATGAGACCACTTGCTGCCTGTTGGGGGATAGGAGCTATGGCTGCTGCCCTATGCCAAGTGCTGTGTGTTGTCCGGACCACCTCCACTGCTGTCCTGGGGGAACCACCTGTGACCTGGAACGGAGCACCTGTGTGTCTAAACACGGCCAAACTTCCATGGCTGTCAAATTCCCCGCCACATTGACCACGACATCCCTACAAAGCACCGTCAATGCTGTGCCCTGCAACGACTCTGTGGCCTGCGCTGATGGAACCACGTGCTGTAAATTACTAAATGGAGATTGGGCCTGCTGCCCCTTACCCAAGGCTGTGTGTTGTGATGACCACCTCCACTGCTGCCCCCACGGGACCATCTGTAACCTGGCAGAGAGTACGTGTGATGACCCCACTTCGGGCTCTGCCCTGGTACCCATGCTGGACAAGGAGCCCGCCTTTAGCTATGTGTCGCAGGAGGAGCCGCTGCCCAACAGCATATGTGACAAATCCACGTCGTGCCCGGGCAAATCCACGTGCTGCAAGACCACCACAGGAAACTGGGCATGCTGCCCCCTGCCCAATGCTGTGTGTTGCGATGACCACCTCCACTGCTGCCCCCACGGCACTGTGTGTAACCTGGAGGCCAGTACTTGCGATGACCCCTCAGGCTTCAACATGCCGTGGGTCACCAAGGTGGCAGCACTCACCACGCAGGCACAACTGGCCACTGAGGAGTGTGACGAACAGACCATGTGCCCCGGGGGCACCACCTGCTGCAGACAGAACTCAGGACAGTGGGCATGCTGTCCTCTACCTCATGCGGTGTGCTGCGACGACCATGAGCACTGCTGCCCTAAAGGCTACACGTGTAACATGGCCGAGCAGACCTGTGACAAAGCCGGGACCCTCAGCTTGCCCTGGATCCCcagggtgccagccctgctccTGCACAGAGTGCTTCCTCAGGCCATtgccccctccttccccctagcCAAGAACATGTGTGACCCCCACACCAGCTGTCCCAAATATACCACCTGCTGCTTCATGAACAAGGCTGGCAAGTGGGGATGCTGCCCCCTGCCAAAGGCGGTGTGCTGTGCCAACGGAGACCACTGCTGCCCCAGCGGCTACAGCTGTGATGGCCACAAGACCTCCTGCACTAAGGGCCCCCTGACCATTCCCTGGTACCGCAAAGTGAAGGCCCTGACTGAGGGAGCCATGTTGAAAGACGTAAAGTGTGACGACAAGAGCAGCTGTGCCTCGGGGGCCACCTGCTGCAAGCTGCCCACAGGCGAATGGGGCTGCTGTCCCCTGGTCAAGGCTGTTTGCTGTACAGACCATGAGCACTGCTGCCCCCAAGGCTACAGCTGCAACATGCAGACTGGGACCTGTGAGAAACTGGTAGAGGCTATACTCCTCCGTACGGTGCCCCTGACAAAGGTAGCAGAGtcccagcagagggcagcagagatGAGTATAGATGTGACTTGTGACAGCACTGGAGAGTACAGCTGTCCCAAACTGGAAACCTGCTGCAAGACTTCACCCACGGAATGGTCCTGCTGCCCTGCACCAAAGGCCATATGCTGCGCGGACACCAGGCACTGCTGCCCCGTGGGATACACATGTGACCTGGAGCGGGGAGGCTGCTCCCAGCAGGCTGAGTTGACCTGGGACATGTTCTACAGCCACGACAAAAAGAGGGACTTTGTTCCGTTTTGACTGAGCTAAAATCGGGAAGCACTGATTTGGACTCTGAGCCAATCAGGATGCAGCACTGATCTGATGTCCCTCACTCCAGCACACAACCTAACCTGCAGCACATTCCATAAGAGGAACAAACAACCTAATGGAAACTGGACAAGGGACAGGAGatttattttgtatgtttttttttgttgtaagtGATTTAATTTGGTTCAATTGGGGTAGAACAGGAAATAGAAATGGTTGGAAGTAGAGAATTCAGCATCTCCACCCAATGGCCAtcccaaagtttttttttttttttaagcagcTAGCTTGTAGGTTTGTTTCAATGTCTTTACGCTTAGTTACTACTGCCCCATATGCCATTTTCTCTATGCAAATGAGAAACATGAATGTATTATAGTCTCTTGGAACAAGAATTATTATTCTCCAGAATAAACCTGCTTTAAGATGTATCAAAAATGTGGTATATTACAAACTCTTTCAAGAACACAGCTACATAGTATAATAAAGCTTATTATCATGTTTCATTGCTGCAGGCACAACCTAGCATTAGTAAGTGAGCGTTAGTATATCGTTCTTTCTCGAAGCACTACAGAGCCATTGATCAGCCGACTGAGTGTTACTTTGATAGACATTTTTGCTCGATTTTTATGTATGTTTTGCCCTCTGGCCTGGGTTCATCACTTTCTGTGAACATCAAAATGGTCCAGCCTCTGACAGTTTTCTGTCATTAAAATAAAAATACTGTCACTCAAACCCCTTAAGTCAAAGCCATTTTTTTTCTTGATGTCATAATACCCATTGTTGAtcatcttgattttcagtatagGAATTGTGGTGCTTGAACAGGTGATGGGGAAGTGAATCCAGTACATAGGAATTGTAAGATTGGTTAGTACAATGTTAGTTGATATCAAAATTGATACTAAGCACTCTGTTCTACCAGCCGTAGTAATGGTAACCAGTAGTAATACTTTGAAAGTCAATGCAAACAATACCAGTTAGCACATAACTCTCATCCCATTCCCGACTAACGTCCAAAATTTGTATCTGTACTCTAGTTttggatttgtttttttttacatgaatgtCATGTTAAATGAAGGACATGTTTTTTGGTTAATTATAGTTTCCTTATCAAATATTTTATCTTATGAAGGGGAGTTGTGTGTCACTGAGGTGAAATAAAATTGTTTCAAATA
>XM_021575936.2
GAACAGGCCATTGGTCATAAGGTGCGAATATCATGTGATAACCGTTGCTGGGAGAAAAAACATGTGAAATCACTCCAGATTGCAAAATACTCCAGCGTCGCTTCGAATGAAAGATAATTTAACTAGTTTGAGCTTTTACTTCGCACACTAACGAAGACTATATGAAGACTATGCATTGCAGTTCCCAACTTGAATAACACATCTGACGATATTCCCTCATCTACCCTCTTACTCTTCTCAGATTCTCTGAACACAATGATAGGGGTGGTGTGTTTGGCCCTCCTAGGCCTGACCTCAGCCCTGATTTGTCCCGATGGTGGGATGTGTGACGATGGCAACACCTGCTGCAAGACCCCCAGTGGTGGATATGGCTGCTGTCCATTACCAAATGCTGAGTGTTGTTCCGACCACCTGCATTGCTGCTATGAGGGGACAGTGTGTGACTTAGTCCACTCCAAGTGCCTCAATAAAACAGTCTCTCTGCCGTGGGTCAGAAGAGTCCCCGCACAACACATCATCAGCCCTCTGATGGTGGAGGGAGTGAGGGCAGTAATTTGTCCCGACGGCGAGTCGGAGTGTCCGGACGACACCACCTGCTGTCAACTCCCAGAAGGCTCCTGGGGCTGCTGTCCGCTGGCCAAGgcaGTGTGCTGTGAGGACAAGATGCACTGCTGTCCAGAGGGCACCAAGTGTGACCTAGCCCACTCCAAGTGTGTGTCTCCCACCCTGGAGACATTTGTCATGAGGGAAAAGGGGCCTGCAATGAAGAAGCAGACGGTGACCTGCCCAGGTGGTACGAGCAGATGCCCAAATGGAACCACCTGTTGCCTGCTGACCAGTGGCGACTATGGCTGCTGCCCCTACCTGGAGgctgtGTGCTGTACCGACAAACTCCACTGTTGCCCTGGCAATACAACCTGTGACCTGGAGCATGATATGTGCACTTCCCCCAACACACAGACCCCACTGGCTAAGAAGACCCCTGCCATCTCCAACGATGTGGATTGCCCAGACAAGGTGTCATCGTGTCCTGATGAGACCACTTGCTGCCTGTTGGGGGATAGGAGCTATGGCTGCTGCCCTATGCCAAGTGCTGTGTGTTGTCCGGACCACCTCCACTGCTGTCCTGGGGGAACCACCTGTGACCTGGAACGGAGCACCTGTGTGTCTAAACACGGCCAAACTTCCATGGCTGTCAAATTCCCCGCCACATTGACCACGACATCCCTACAAAGCACCGTCAATGCTGTGCCCTGCAACGACTCTGTGGCCTGCGCTGATGGAACCACGTGCTGTAAATTACTAAATGGAGATTGGGCCTGCTGCCCCTTACCCAAGGCTGTGTGTTGTGATGACCACCTCCACTGCTGCCCCCACGGGACCATCTGTAACCTGGCAGAGAGTACGTGTGATGACCCCACTTCGGGCTCTGCCCTGGTACCCATGCTGGACAAGGAGCCCGCCTTTAGCTATGTGTCGCAGGAGGAGCCGCTGCCCAACAGCATATGTGACAAATCCACGTCGTGCCCGGGCAAATCCACGTGCTGCAAGACCACCACAGGAAACTGGGCATGCTGCCCCCTGCCCAATGCTGTGTGTTGCGATGACCACCTCCACTGCTGCCCCCACGGCACTGTGTGTAACCTGGAGGCCAGTACTTGCGATGACCCCTCAGGCTTCAACATGCCGTGGGTCACCAAGGTGGCAGCACTCACCACGCAGGCACAACTGGCCACTGAGGAGTGTGACGAACAGACCATGTGCCCCGGGGGCACCACCTGCTGCAGACAGAACTCAGGACAGTGGGCATGCTGTCCTCTACCTCATGCGGTGTGCTGCGACGACCATGAGCACTGCTGCCCTAAAGGCTACACGTGTAACATGGCCGAGCAGACCTGTGACAAAGCCGGGACCCTCAGCTTGCCCTGGATCCCcagggtgccagccctgctccTGCACAGAGTGCTTCCTCAGGCCATtgccccctccttccccctagcCAAGAACATGTGTGACCCCCACACCAGCTGTCCCAAATATACCACCTGCTGCTTCATGAACAAGGCTGGCAAGTGGGGATGCTGCCCCCTGCCAAAGGCGGTGTGCTGTGCCAACGGAGACCACTGCTGCCCCAGCGGCTACAGCTGTGATGGCCACAAGACCTCCTGCACTAAGGGCCCCCTGACCATTCCCTGGTACCGCAAAGTGAAGGCCCTGACTGAGGGAGCCATGTTGAAAGACGTAAAGTGTGACGACAAGAGCAGCTGTGCCTCGGGGGCCACCTGCTGCAAGCTGCCCACAGGCGAATGGGGCTGCTGTCCCCTGGTCAAGGCTGTTTGCTGTACAGACCATGAGCACTGCTGCCCCCAAGGCTACAGCTGCAACATGCAGACTGGGACCTGTGAGAAACTGGTAGAGGCTATACTCCTCCGTACGGTGCCCCTGACAAAGGTAGCAGAGtcccagcagagggcagcagagatGAGTATAGATGTGACTTGTGACAGCACTGGAGAGTACAGCTGTCCCAAACTGGAAACCTGCTGCAAGACTTCACCCACGGAATGGTCCTGCTGCCCTGCACCAAAGGCCATATGCTGCGCGGACACCAGGCACTGCTGCCCCGTGGGATACACATGTGACCTGGAGCGGGGAGGCTGCTCCCAGCAGGCTGAGTTGACCTGGGACATGTTCTACAGCCACGACAAAAAGAGGGACTTTGTTCCGTTTTGACTGAGCTAAAATCGGGAAGCACTGATTTGGACTCTGAGCCAATCAGGATGCAGCACTGATCTGATGTCCCTCACTCCAGCACACAACCTAACCTGCAGCACATTCCATAAGAGGAACAAACAACCTAATGGAAACTGGACAAGGGACAGGAGatttattttgtatgtttttttttgttgtaagtGATTTAATTTGGTTCAATTGGGGTAGAACAGGAAATAGAAATGGTTGGAAGTAGAGAATTCAGCATCTCCACCCAATGGCCAtcccaaagtttttttttttttttaagcagcTAGCTTGTAGGTTTGTTTCAATGTCTTTACGCTTAGTTACTACTGCCCCATATGCCATTTTCTCTATGCAAATGAGAAACATGAATGTATTATAGTCTCTTGGAACAAGAATTATTATTCTCCAGAATAAACCTGCTTTAAGATGTATCAAAAATGTGGTATATTACAAACTCTTTCAAGAACACAGCTACATAGTATAATAAAGCTTATTATCATGTTTCATTGCTGCAGGCACAACCTAGCATTAGTAAGTGAGCGTTAGTATATCGTTCTTTCTCGAAGCACTACAGAGCCATTGATCAGCCGACTGAGTGTTACTTTGATAGACATTTTTGCTCGATTTTTATGTATGTTTTGCCCTCTGGCCTGGGTTCATCACTTTCTGTGAACATCAAAATGGTCCAGCCTCTGACAGTTTTCTGTCATTAAAATAAAAATACTGTCACTCAAACCCCTTAAGTCAAAGCCATTTTTTTTCTTGATGTCATAATACCCATTGTTGAtcatcttgattttcagtatagGAATTGTGGTGCTTGAACAGGTGATGGGGAAGTGAATCCAGTACATAGGAATTGTAAGATTGGTTAGTACAATGTTAGTTGATATCAAAATTGATACTAAGCACTCTGTTCTACCAGCCGTAGTAATGGTAACCAGTAGTAATACTTTGAAAGTCAATGCAAACAATACCAGTTAGCACATAACTCTCATCCCATTCCCGACTAACGTCCAAAATTTGTATCTGTACTCTAGTTttggatttgtttttttttacatgaatgtCATGTTAAATGAAGGACATGTTTTTTGGTTAATTATAGTTTCCTTATCAAATATTTTATCTTATGAAGGGGAGTTGTGTGTCACTGAGGTGAAATAAAATTGTTTCAAATA

Function

symbol description
grn Enables chaperone binding activity. Involved in several processes, including lysosomal lumen acidification; negative regulation of respiratory burst involved in inflammatory response; and positive regulation of lysosome organization. Located in several cellular components, including Golgi apparatus; late endosome; and lysosomal membrane. Implicated in dementia (multiple); neurodegenerative disease (multiple); and neuronal ceroid lipofuscinosis 11. Biomarker of Grn-related frontotemporal lobar degeneration with Tdp43 inclusions; atherosclerosis; autistic disorder; bipolar disorder; and neurodegenerative disease (multiple).

NR:

description
granulins-like isoform X2

GO: NA

KEGG:

id description
K23879 GRN; progranulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575935.2 False 3929 mRNA 0.50 17 16560848 16592647
XM_021575936.2 True 3926 mRNA 0.50 17 16560848 16592647

Neighbor

gene id symbol gene type direction distance location
LOC110499586 LOC106589323 coding upstream 15844 16540942 ~ 16545004 (+)
LOC110498755 LOC106589324 coding upstream 20411 16535724 ~ 16540437 (+)
LOC110499059 LOC106589326 coding upstream 112149 16349976 ~ 16448699 (+)
LOC110499058 LOC106589328 coding upstream 254220 16140837 ~ 16306628 (+)
LOC110499057 LOC106589330 coding upstream 424884 16134445 ~ 16135964 (+)
LOC110499062 arf1l coding downstream 12404 16605051 ~ 16611216 (+)
grb7 LOC106589320 coding downstream 29124 16621771 ~ 16637170 (+)
LOC110498756 LOC106589319 coding downstream 64844 16657491 ~ 16706241 (+)
LOC100135885 LOC106589306 coding downstream 197166 16789813 ~ 16795054 (+)
LOC110499066 LOC106589302 coding downstream 220467 16813114 ~ 16822670 (+)
G1668860 NA non-coding upstream 12178 16547383 ~ 16548670 (+)
G1668836 NA non-coding upstream 74468 16486105 ~ 16486380 (+)
G1668821 LOC106573797 non-coding upstream 107444 16452989 ~ 16453404 (+)
G1668458 NA non-coding upstream 217800 16342817 ~ 16343048 (+)
G1668457 NA non-coding upstream 218229 16342200 ~ 16342619 (+)
G1668867 NA non-coding downstream 22089 16614736 ~ 16614969 (+)
G1668923 NA non-coding downstream 23153 16615800 ~ 16616015 (+)
G1668926 yo84 non-coding downstream 25765 16618412 ~ 16618683 (+)
G1668930 NA non-coding downstream 45890 16638537 ~ 16638927 (+)
G1668935 NA non-coding downstream 55577 16648224 ~ 16648455 (+)
G1667601 NA other upstream 1219664 15339612 ~ 15341184 (+)
G1666308 NA other upstream 1774928 14785592 ~ 14785920 (+)
LOC118941995 LOC105021261 other downstream 860840 17453487 ~ 17457043 (+)
G1670091 NA other downstream 980184 17572831 ~ 17577262 (+)
G1670125 LOC105007702 other downstream 1124389 17717036 ~ 17812707 (+)
G1670129 NA other downstream 1159647 17752294 ~ 17760812 (+)

Expression


Co-expression Network