LOC110499123 (LOC106589291)


Basic Information

Item Value
gene id LOC110499123
gene name LOC106589291
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 19915972 ~ 19938321 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576046.2
GCCCTCATTGGCCGTTTCTACAGCACTTTTTGAAGGCATTTCTTGTTTTTCCCACACATTTGTTGAGAAAGCCATGGTCAACGATATGGTGAGGCTCTGTGATTTGACAAACAAATGGGAAATCACAAAGTTTGTTGGACATTTGAAGAAAAAAGAATTACCATGATGAGAGTGGTCACACATGAACTTCAGACCCATACCCTCCTAAGATGACAGGGAGTTTGTAGCAGGACAGTCTCACTGAAAAATATACCATTAACACAAGGGAGGGAAGCCTGACATTATAATTAAAAAAATGGAATCATTTCAAAATCCTTATGGGGCCACTCTCAACCGCAGCCAATCGCTGATGAGTGGCCTGGAGAAGACCCCTCCCACCTGCAACAAGCCCACCCACTCTCGGAGCAGTAGCACTGCCTCCTCCCGTCACTCCCGGAACATTAAAGATTGGGAGGTGATGGACGACCTTCAGGTGGACGTGACGTCAGGTGACAACCCCCAGGACCTGACCATCCCAGGCATCTGTGAAGGATACCTCCTCAAGAGGAGAAAATGGCCCCTGAAAGGCTGGCACAAGAGGTACTTTGTGTTGGAAACAGGGATCTTGCGATATTCCAAAACCCAACAAGATATTACAAGGGGAAAGCTCCATGGTTCATTAGATATCAGCCTTGCAGTCATGTCAATCAACAAGAAATCCAATCGTATCAATTTGGATGCAGGAGACATTCTATATCACATGAAGGCCAAGAGTCATGAACTGTTCTACATCTGGGTGACCAAGCTGAGTGCCCACCGCATGTTCAAGAAGAACGAGGCTGCTCAAGTGCACAATGGCTTCCTCCAGGCCTTGTCCCAGGGCACCAGTGTGGCTGGACTAGCACAGCGGAACGGCATGCAGGACGTGTCTTCCTACCAACACTACCAAAGCACTACAGGCTCTTACATGGGTGAGATAGCTGCACCAACACTGTCAGAGTTTCCCTCGGTCAACCCTGGGGTGAATGGGAAGGTGTCAGCCTGGTTGCAACAGACTCATGACCCAGACAGCTGTGCTGAAGAGCTGAACCGTTGTCAGTTGGACCTGTCTGAGCTGAACCGGCTGGTCCAGAGGCTGCAGTCACTGGAGGGGGGGCAGCAAGCCTTCACCAATGGAGAGCTGCAGCGCATCATCAGCATGCAGAATCTTTCCCTTGAGAAACCCAAGAAGTCCAGGTCTGGCAAGATATGGGGTCACTCACGCACAATGTCAAGGGTGGAGGCCCTCGGAATGCCTTTTCGTGGGATTACAAAATCGCTGTCCTCCAGTCACCTGAACAGCTCTTCCCAACTGGGTGcgtctgtcccctccctcccagACTATGTACCCTCCATCCCAGACTACGTCTGCTCCCAGCTGTCCCCTCCCACCAACACCTCCGCTGAAGGCAAGAAGATCCAGCAGGACATCTGTACTTTGTCCCAAAGAGTGCACACGTCCCTCAAGTCTGTGCATGAGGCCTTGGCCCAGGAGCGTCAGAGACTGCAGGACACTTACCACCAATCAACCACACAGGCTGAGACTGCATCTGGGAACCAGTCCCGCCGCACACCCTCAGTGACAGACTCTGCAGCAGAGTATTTTGATGCGAGTGACGACGTCCTGAATGGGAGCTCCTCTGAGTCTGACGAGTCTGGTCTGAGCGACAGGACCACCAGCAACTCTGAACCCGAGGAGGGCCATGCTTCGGCCACTCGTGAGTACCGTGCCAGCATCTCTAAGGCTCCCAACAGTGTTGTGCCCATGAACACTGGTCGCCGTACCACTCTGCCTGCCCACTGCCCAGAGAATGCCCATGTGGGCCTGATGCAGATCCTCTACAACAATATAGGCAAGGACCTGTCCCGTGTCTCCATGCCTGCTGCTCTCAACGAGCCTATCAACCTGATACAAAGACTGTGTGAGGAGCTGGAGTACTCCGAGCTGCTGGACATTGCCAACAACACACAGGACCCCTACCAGAGGATGGTCTACATTGGTGCCTTTGCCATCTCTGGTTATGCTACAGCTCACTACCGCAACCGCTACAAGCCCTTTAATCCACTCCTGGGGGAGACCTATGAATGTCTGAGAGAGGACAAGGGCTTCCGCTACATCAGTGAGCAGGTTTGCCACCATCCCCCCATCTCTGCGTGTCACGCTGACTCAGATAACTTCTCCTTGTGGCAGGACCAGCGATGGAAGAATAAGTTCTGGGGAAAGTCACTGGAGATCATGCCAACAGGGATCGTGAACGTCACTCTCCCAAGGTTCGGGGACCACTATGAGTGGAACAAAGTAGTGACCTGTGTCCATAATGTCCTGAGCCAGCAACGCTACCTGGAGCACTATGGGGAGGTTATCATCCGTAACCTCAACAGCAACGCGTGCACTTGTAAAATCACCTTTGTCAAGTCCCGCTATTGGGGGTCGGACACCATCAAGAACGAGGTGCAGGGCACTGTGCTGGACCAGACTGGGAGTGTTATCCACCGGTTTGGGGGGTTGTGGCATGAGGGCATCTTCTGTGACACTTTTCCCACTCCGCAGTGTATCTGGAAGCCAAATCCCCAGCCCAAGGACTACTACCTGTATTACGGCTTTTCCAACTTCGCACTGGAGCTGAACGAGCTCACCCCAGGCTTGAAGCCTCTTCTGCCCCCCACAGACTCACGCCTTCGCCCTGACCAGAGGatgctggaggatgggagggtggatGATTGTGATAAGTTTAAAGAAGAAGTGGAGGACATGCAGAGGGAGCGGAGGAAACAACTGGCTAAGAAAGGACAAGAGCACAAGCCACGCTTCTTCAAGAAAGCCGTGGATTCCTCTGGGAGGGATGTGTGGCTGACCAACGGAACCTATTGGAAATTCAGAGAGAACCCGGGGTTTGCTAACACAAACAACCTGGAACTATGGTGAGGAAACACACTGGGGCCATTTGGTGGCCTGCGAGAATCAAATGACAAAATTACCCAAGTCTGTATTGAAACCCAGAGGATACGTGGTGGGAATTGATGAAGGCTTGGATGAACTGTCCTGAGAAGCCCACCTTCTATCATCACCATCTTATATGCACTCCCAAGACAAAGAAAACTTCCAGGAAAGTCTGGAAACTACTTGGATCCACTGAACAGTCATCAGTGAACAGTCAAGTTGAAAATAGTTCCCAGAATTCCCTGAAAGTGTAGCATCACCTGTTCCATCACCTAAGAAGGATAAAGAGAGACTTTGTTCATTTTTCTAATGCATTTCTACTGGTACTTGTATTGTCCATTGCAATGTAGTTACGATCATTCCCTATTGTTTGTGTACATTTATGTTCCTCTATCAGGATGCATTTGCTGTccagagcagtgtttcccaactccagtactCGAATACCCCAAAAATACAAATTTatgttgtagccctggacaagcacacctgactcaacttgtcaactaatcagcaaagccctcaatgagttgaatcaggtgagttagtccggggcaacaacaaaaatgtgtgctgttggggggtactggaggactcgagttgagaaacactgtctagagcaggggtattcaactcttgcCCCATGAGGTCCGGAGCtagctggttttctgttctacctgatcattaattgCAACCACTTAGTgtgccaggtctaaatcagtccctgattagaggggatcAATGAAAACAATCAGTGGGACTGGCTTCGCGGTCCAGAGTTTGAGTTTGAGCGGCCTCGAGGGGTGGAAGTGTGAGGTTAATTTGCTCAGGTCAAGAAAACATTTACTGTGGACTAATATTCAGAGATTGTATATTTTGAAATGTGTATTTTATACTCTCTGGGCTGAATCCTAACTAGATTTTTGTGTTTCATCACTCAACGTTTTCACATAAATCTCCCAAAGACATCTATGCATGATTCTTAGTTACGTGAGTGGATCTTAAGTTAAGATACAACCCTTTATGAATTATTGTTGAATCATATTTATTTCAGTGGCACTAGTGTATTAAATACCTCTCTTTTACAAGAGTTAATTTTAGTAAGTCAAACAATTTGACATGGGAATATAACCTATAACTTGTCATCTAGCTTGCATAAATTGTGCTTTTGATTTGTGATTTTAGTTAACACTAATAATGCTATTGTGATGATTAAAGATATTTCTCATGAAAGGGGTTACCAAGTCGAAACTGGTTGAGTGGGAActgaatgtactgtattcatcataattcatctgCTTTATGGTACCTTTTATAATGGTGAATTATGAGTATAATCAAATTATGATCAAACTAGACTTAATATCAACatgtgtaatatactgtacaatggataTATGGCTATTATTCAATAGTTTGTATTTACATTCAATGAGATACCAAACCAAACAGTTGTGATTTAAGATAGTTAAACTTTAATTCATGAATAAAAAACAACAGTACAATACACACGTAAGCCACCTTTAATAAATAACATTTTCCCCCTCTGTTTTCTGCCATTCAAGTCTTTTTTTTACATTAGAATAAATCAAACACAATATTTTGCATTTCTCTACTGCATTCCTGAATCATCTGAGTCTG

Function

NR:

description
oxysterol-binding protein-related protein 7-like

GO: NA

KEGG:

id description
K20463 OSBPL3_6_7, ORP3_6_7; oxysterol-binding protein-related protein 3/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576046.2 True 4600 mRNA 0.47 21 19915972 19938321

Neighbor

gene id symbol gene type direction distance location
LOC110498763 NA coding upstream 711 19914464 ~ 19915261 (+)
LOC110498764 NA coding upstream 12603 19901163 ~ 19903369 (+)
LOC110499126 cbx1 coding upstream 29581 19878973 ~ 19886391 (+)
LOC110498765 LOC106589283 coding upstream 73883 19797750 ~ 19842089 (+)
LOC110498767 NA coding upstream 154410 19758888 ~ 19761562 (+)
LOC110499120 LOC106589294 coding downstream 234093 20172414 ~ 20291141 (+)
LOC110499117 LOC106589296 coding downstream 370427 20308748 ~ 20314910 (+)
LOC110499115 LOC106589298 coding downstream 381163 20319484 ~ 20369276 (+)
LOC118942050 NA coding downstream 555004 20493325 ~ 20644068 (+)
LOC110499114 LOC105007436 coding downstream 716143 20654464 ~ 20688063 (+)
G1670904 NA non-coding upstream 8242 19906806 ~ 19907730 (+)
G1670894 NA non-coding upstream 37283 19878400 ~ 19878689 (+)
G1670801 NA non-coding upstream 170318 19745433 ~ 19745654 (+)
LOC110499129 LOC106589284 non-coding upstream 185150 19728772 ~ 19731361 (+)
G1670783 NA non-coding upstream 194900 19720785 ~ 19721072 (+)
G1671244 NA non-coding downstream 574699 20513020 ~ 20513264 (+)
G1671247 NA non-coding downstream 578993 20517314 ~ 20517532 (+)
G1671251 NA non-coding downstream 583260 20521581 ~ 20521797 (+)
G1671252 NA non-coding downstream 583494 20521815 ~ 20522112 (+)
G1671259 NA non-coding downstream 590907 20529228 ~ 20529544 (+)
LOC110499153 LOC106589263 other upstream 790736 19094882 ~ 19201695 (+)
G1670209 LOC105007702 other upstream 1794805 18051611 ~ 18132470 (+)
G1670125 LOC105007702 other upstream 2136598 17717036 ~ 17812707 (+)
G1671091 NA other downstream 289474 20227795 ~ 20228168 (+)
G1672918 NA other downstream 1151082 21089403 ~ 21089830 (+)
G1672973 NA other downstream 1202204 21140525 ~ 21191078 (+)
G1673044 NA other downstream 1358051 21296372 ~ 21296854 (+)
G1673063 NA other downstream 1378477 21316798 ~ 21317412 (+)

Expression


Co-expression Network