Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118942480 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 21953008 ~ 21953135 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005038416.1 | True | 128 | mRNA | 0.43 | 1 | 21953008 | 21953135 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118942479 | NA | coding | upstream | 5483 | 21947398 ~ 21947525 (+) |
| LOC118942478 | NA | coding | upstream | 11161 | 21941720 ~ 21941847 (+) |
| gspt1 | gspt1 | coding | upstream | 16543 | 21924825 ~ 21936465 (+) |
| dmc1 | LOC106609504 | coding | upstream | 33399 | 21907617 ~ 21919609 (+) |
| tomm22 | LOC106589546 | coding | upstream | 45787 | 21902605 ~ 21907221 (+) |
| LOC110499590 | tnfrsf17 | coding | downstream | 19603 | 21972738 ~ 21974195 (+) |
| snx29 | snx29 | coding | downstream | 21203 | 21974338 ~ 22091580 (+) |
| cpped1 | cpped1 | coding | downstream | 298996 | 22252131 ~ 22318724 (+) |
| LOC118942051 | NA | coding | downstream | 307612 | 22260747 ~ 22281843 (+) |
| ercc4 | ercc4 | coding | downstream | 387594 | 22340729 ~ 22347757 (+) |
| G1673797 | NA | non-coding | upstream | 2987 | 21944028 ~ 21950021 (+) |
| G1673778 | NA | non-coding | upstream | 50928 | 21901867 ~ 21902080 (+) |
| G1673775 | LOC106589545 | non-coding | upstream | 52826 | 21896765 ~ 21900182 (+) |
| G1673768 | NA | non-coding | upstream | 86913 | 21865886 ~ 21866095 (+) |
| G1673766 | NA | non-coding | upstream | 88326 | 21864483 ~ 21864682 (+) |
| G1673803 | NA | non-coding | downstream | 12799 | 21965934 ~ 21966202 (+) |
| G1673783 | NA | non-coding | downstream | 15502 | 21968637 ~ 21971293 (+) |
| G1673838 | NA | non-coding | downstream | 89308 | 22042443 ~ 22044388 (+) |
| G1673841 | NA | non-coding | downstream | 95619 | 22048754 ~ 22050773 (+) |
| tnrc6b | LOC106589538 | other | upstream | 107142 | 21806703 ~ 21848442 (+) |
| G1673231 | LOC106589530 | other | upstream | 502662 | 21444883 ~ 21450346 (+) |
| LOC110499100 | LOC106589528 | other | upstream | 515627 | 21422168 ~ 21437402 (+) |
| G1673204 | NA | other | upstream | 563230 | 21386329 ~ 21389778 (+) |
| G1673063 | NA | other | upstream | 635596 | 21316798 ~ 21317412 (+) |
| LOC110499192 | LOC106589579 | other | downstream | 1303669 | 23252800 ~ 23269058 (+) |
| faap100 | faap100 | other | downstream | 1626895 | 23576429 ~ 23582556 (+) |
| G1677419 | LOC100194703 | other | downstream | 3129529 | 25082664 ~ 25083277 (+) |
| G1677738 | NA | other | downstream | 3683556 | 25636691 ~ 25641614 (+) |
| G1678963 | NA | other | downstream | 4509059 | 26462194 ~ 26467953 (+) |
