LOC110499467 (LOC106589877)


Basic Information

Item Value
gene id LOC110499467
gene name LOC106589877
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 39671050 ~ 39678438 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956333.1
GGCttatctttcatttatttggcgtgggctacagccaaacagtagcctgtgtaaagttgggttaataaaccgtcaattcATAAACtctggatttacatttactatgttacgtctagatTCTGAGACCAGGCTGACATGACGTTAGGTTACTTCACTGGTCATGAACAATACATTGTTTCAGTTTTAGAGTGAAGGGGAGATGTCTAGTAGCACCCAGCTGAGCATCCAGCATTGGACCACCAAGCACGTAGCCAAGTGGCTTAAGGACGAGGGCTTCTGCCACTATGTAGACCTGCTGTGCAACAAGCACCGTCTGGATGGCATGTCTTTACTCACCCTGAGTGAATACGACCTCCGCTCTCCCCCGCTGGAACTCAAGGTGCTGGGGGACATCAAGAGGCTGATGGTGTCCCTCCGCAAGCTGCAGAAACACAACCTGGACATCCTGGAGGAGCTGGGGGTCCCGTTCGACGGACACTCGCCTCAGGGTGGGGACTGGCACTGCAACGGAGACTCCAGTAGAGAGTGCGATAACTCTAACACAGACACAGCACCGGTTGGAGAGCAGTATCTTCAGTATAGGAATGGGAAGTACAAGCACGGAGGGAGCGGGAGGCTGGACCCCGAGTACTGGAAGACGGCGCTTAGTGCCATCTACGTGGTGTTTGTGTTCGGATTTACCTCCTTCGTCATGGTGATCGTGCACGAGAGGGTGCCGGACATGCGCACCTACCCGCCCTTGCCAGACATTTTCTTAGACAGtGTACCTAGAATACCATGGGCCTTTGCCATGGCAGAGGCATGTGGAGTCATCTTGTGTAATATCTGGCTGCTAGTTCTGCTGCTGCACAAACACAGGTCCATTCTACTGCGTCGGCTGTGCAGCCTCATGGGGACAGTGTTCATGCTGCGTTGCGTCACCATGTTTGTGACCTCCCTGTCAGTGCCAGGGCAGCACCTGCAGTGCTCAGGAAAGGTGTATGGTGATATGTGGGCCAAACTGCATCGAGCTCTGGTCATATGGAGTGGATTTGGAATGTCCCTCACAGGGGTCCATACATGTGGGGACTACATGTTCAGCGGTCACACGGTGGTCATCACCATGCTCAACTTCTTTGTGACAGAATACACCCCGCGGGGCTGGAACTTCATCCACACCTTGTCCTGGGTCCTGAACTTGTTTGGCATCTTCTTTATCCTGGCGGCCCATGAACACTATTCCATCGACGTCTTCATCGCCTTCTACATCACAACCAGGCTGTTCCTGTACTACCACACGCTGGCTAACACCAGGGCCTACCAGCAGAGTCGCAGGGCCCGCATCTGGTTCCCCATGTTCTCCTTCTTCGAATGCAACGTCAACGGGCCCGTGCCCAACGAGTACGGCTGGCCCTTCTCTAAACCCGCCGTGATCCGGAGCATGATTGGGTACTAGGCGGTAGCGTGCACGGGTCCGCGATGCAGCCACGGCGACGTTGATCTCTTCTAACACACTAACGCTGTTTACTCTGAGCCCCGTCGTGCTATTTTTGCTGCTGTGCTGCCTTCAAGGAGTGGCCAACTGTGGTTGTGTGATATTGACTTTATATTCCAATAGCTGCAGAGACTGCAAACTGAGATGGCTTTGTAGGATCCTATCGGTGCCACAGTGAGACAGGGTACGGGGAGACTTGATTTACTCCTATTCGGTGACTTAGTGGTTGGCTGGCGTTTGTCCCACGGCAGCCTGTTGAAAGGGATAAAACTAAGTGTgtgtccaaaatgacaccctactcattttatagtgcactactttagaccagggctctatgGCCTCTCGTCAAAaataatgcactacatagggaatagggtgccattttggataaaTGCTAAAGACTAGTCCTCTCATTTGAAAAGGGATTGAGATTTTTTGAAGATATTTCCCACACCTTTTGCCATGATCAATAACCAGGTTACAGATGTGATGTAAGTGCTTTAGTCAACTCCTCGTCTCTTGTTATGCCTTACTGTTTATGGCGTGACAGTGAACTCGACAGAGGAGTTGGCTACAGCACAAACTGACCTGCTACTGCCAGGCTAGCATTTCCACGCTTTTAACGCCTCTTAACTTGCAGTCTGGAGTGAATGTCGAAGGTAATAATAGCAAGCTAGAGGTTTGGGAGGAGAAACATGAAAGCAGAATTCTCAGGCAGCCTATTGTaaccaaaaatgtttattttttaagtcCAATAGAATTTGTTAATCTAAAGTTCAACAGTATTAtagtaataaataaaaaaaaagctaTT
>XM_036956332.1
CTGTCATTTCACCAGTAGAGGTCAGTGTAGTGGCTATAAATTCAGCAATGAGCGACCCTCGACTCAGTACAAGAGAACTACCTGGTGCTCGGCTCCTTCCAGTGTTGTCAACCGCAAAGCGGACGAAATGATTTGCCTCAATCGTCTTATCACACTAAACGTAAATATAGTTTCGTCAGACTCATGTGAGATGCCGTATAGTCATTTTTTACTCTCCGCGGCAGCTCATTAAAAGTTGAGTCTGAATTCCGTTTAGAGTGAAGGGGAGATGTCTAGTAGCACCCAGCTGAGCATCCAGCATTGGACCACCAAGCACGTAGCCAAGTGGCTTAAGGACGAGGGCTTCTGCCACTATGTAGACCTGCTGTGCAACAAGCACCGTCTGGATGGCATGTCTTTACTCACCCTGAGTGAATACGACCTCCGCTCTCCCCCGCTGGAACTCAAGGTGCTGGGGGACATCAAGAGGCTGATGGTGTCCCTCCGCAAGCTGCAGAAACACAACCTGGACATCCTGGAGGAGCTGGGGGTCCCGTTCGACGGACACTCGCCTCAGGGTGGGGACTGGCACTGCAACGGAGACTCCAGTAGAGAGTGCGATAACTCTAACACAGACACAGCACCGGTTGGAGAGCAGTATCTTCAGTATAGGAATGGGAAGTACAAGCACGGAGGGAGCGGGAGGCTGGACCCCGAGTACTGGAAGACGGCGCTTAGTGCCATCTACGTGGTGTTTGTGTTCGGATTTACCTCCTTCGTCATGGTGATCGTGCACGAGAGGGTGCCGGACATGCGCACCTACCCGCCCTTGCCAGACATTTTCTTAGACAGtGTACCTAGAATACCATGGGCCTTTGCCATGGCAGAGGCATGTGGAGTCATCTTGTGTAATATCTGGCTGCTAGTTCTGCTGCTGCACAAACACAGGTCCATTCTACTGCGTCGGCTGTGCAGCCTCATGGGGACAGTGTTCATGCTGCGTTGCGTCACCATGTTTGTGACCTCCCTGTCAGTGCCAGGGCAGCACCTGCAGTGCTCAGGAAAGGTGTATGGTGATATGTGGGCCAAACTGCATCGAGCTCTGGTCATATGGAGTGGATTTGGAATGTCCCTCACAGGGGTCCATACATGTGGGGACTACATGTTCAGCGGTCACACGGTGGTCATCACCATGCTCAACTTCTTTGTGACAGAATACACCCCGCGGGGCTGGAACTTCATCCACACCTTGTCCTGGGTCCTGAACTTGTTTGGCATCTTCTTTATCCTGGCGGCCCATGAACACTATTCCATCGACGTCTTCATCGCCTTCTACATCACAACCAGGCTGTTCCTGTACTACCACACGCTGGCTAACACCAGGGCCTACCAGCAGAGTCGCAGGGCCCGCATCTGGTTCCCCATGTTCTCCTTCTTCGAATGCAACGTCAACGGGCCCGTGCCCAACGAGTACGGCTGGCCCTTCTCTAAACCCGCCGTGATCCGGAGCATGATTGGGTACTAGGCGGTAGCGTGCACGGGTCCGCGATGCAGCCACGGCGACGTTGATCTCTTCTAACACACTAACGCTGTTTACTCTGAGCCCCGTCGTGCTATTTTTGCTGCTGTGCTGCCTTCAAGGAGTGGCCAACTGTGGTTGTGTGATATTGACTTTATATTCCAATAGCTGCAGAGACTGCAAACTGAGATGGCTTTGTAGGATCCTATCGGTGCCACAGTGAGACAGGGTACGGGGAGACTTGATTTACTCCTATTCGGTGACTTAGTGGTTGGCTGGCGTTTGTCCCACGGCAGCCTGTTGAAAGGGATAAAACTAAGTGTgtgtccaaaatgacaccctactcattttatagtgcactactttagaccagggctctatgGCCTCTCGTCAAAaataatgcactacatagggaatagggtgccattttggataaaTGCTAAAGACTAGTCCTCTCATTTGAAAAGGGATTGAGATTTTTTGAAGATATTTCCCACACCTTTTGCCATGATCAATAACCAGGTTACAGATGTGATGTAAGTGCTTTAGTCAACTCCTCGTCTCTTGTTATGCCTTACTGTTTATGGCGTGACAGTGAACTCGACAGAGGAGTTGGCTACAGCACAAACTGACCTGCTACTGCCAGGCTAGCATTTCCACGCTTTTAACGCCTCTTAACTTGCAGTCTGGAGTGAATGTCGAAGGTAATAATAGCAAGCTAGAGGTTTGGGAGGAGAAACATGAAAGCAGAATTCTCAGGCAGCCTATTGTaaccaaaaatgtttattttttaagtcCAATAGAATTTGTTAATCTAAAGTTCAACAGTATTAtagtaataaataaaaaaaaagctaTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K22697 SAMD8; sphingomyelin synthase-related protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956333.1 False 2288 mRNA 0.50 6 39671050 39678438
XM_036956332.1 True 2357 mRNA 0.50 6 39671267 39678438

Neighbor

gene id symbol gene type direction distance location
LOC110499546 LOC106589879 coding upstream 52670 39516539 ~ 39618380 (+)
LOC118942017 NA coding upstream 252099 39416869 ~ 39418951 (+)
LOC110499465 LOC106589883 coding upstream 474850 39124078 ~ 39196200 (+)
LOC118942069 NA coding upstream 520648 39143956 ~ 39150402 (+)
plaub plau coding upstream 552200 39110890 ~ 39118850 (+)
LOC110499468 vdac2 coding downstream 5157 39683595 ~ 39687922 (+)
mgme1 mgme1 coding downstream 761483 40439921 ~ 40443984 (+)
ephx5 LOC105009996 coding downstream 776356 40454794 ~ 40467136 (+)
LOC110499485 NA coding downstream 809518 40487956 ~ 40490785 (+)
LOC118942071 NA coding downstream 820519 40498957 ~ 40502399 (+)
G1693321 LOC106589878 non-coding upstream 2737 39665252 ~ 39668313 (+)
G1693316 NA non-coding upstream 12858 39656836 ~ 39658192 (+)
G1693313 NA non-coding upstream 14482 39638075 ~ 39656568 (+)
G1693312 NA non-coding upstream 29441 39637881 ~ 39641609 (+)
G1693289 NA non-coding upstream 92020 39576326 ~ 39579030 (+)
G1693340 NA non-coding downstream 50208 39728646 ~ 39746677 (+)
G1693575 NA non-coding downstream 93552 39771990 ~ 39772253 (+)
G1693582 NA non-coding downstream 99336 39777774 ~ 39778014 (+)
G1693584 NA non-coding downstream 99696 39778134 ~ 39778385 (+)
G1693695 NA non-coding downstream 200390 39878828 ~ 39879186 (+)
G1693184 NA other upstream 311415 39356345 ~ 39359635 (+)
G1692702 NA other upstream 830779 38839934 ~ 38840271 (+)
G1692568 NA other upstream 958759 38710951 ~ 38712291 (+)
G1692406 NA other upstream 1101604 38568269 ~ 38569446 (+)
G1691992 NA other upstream 1442499 38228015 ~ 38228551 (+)
G1693699 NA other downstream 202911 39881349 ~ 39881843 (+)
G1693700 NA other downstream 203520 39881958 ~ 39882625 (+)
G1693914 NA other downstream 533084 40211522 ~ 40212953 (+)
G1695272 NA other downstream 1939589 41618027 ~ 41618505 (+)
LOC110499605 LOC106590859 other downstream 2831193 42484544 ~ 42511247 (+)

Expression


Co-expression Network