G1669054 (LOC100194703)


Basic Information

Item Value
gene id G1669054
gene name LOC100194703
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 16880272 ~ 16880602 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1909644
gttttgttccctgagccacttagttatcacatTTGCCTTATGGCCagttgctccatcatgctggaaaaggcattgttcatcaccaaactgttcctggatggttgggggaagttgctctctgaggatgtgttggtaccattcttcattcatggctgtgttcttaggcaaaattgtgagtgagccaaATCCCTTGGCTAAGAAGCagccccacacatgaatggtctcaggatgctttactgttggcatgacacagttctgatggttgcgctcaccttgtcttctccggaaacaagctttttttccagatgccccaaacaattggaaaggggat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1909644 True 331 lncRNA 0.47 1 16880272 16880602

Neighbor

gene id symbol gene type direction distance location
LOC110499071 arl4d coding upstream 30376 16847450 ~ 16849896 (+)
LOC110499069 LOC106589311 coding upstream 39937 16824486 ~ 16840335 (+)
LOC110499066 LOC106589302 coding upstream 57602 16813114 ~ 16822670 (+)
LOC100135885 LOC106589306 coding upstream 85218 16789813 ~ 16795054 (+)
LOC110498756 LOC106589319 coding upstream 174031 16657491 ~ 16706241 (+)
LOC118942005 LOC106589179 coding downstream 121112 17001714 ~ 17006377 (+)
LOC110499073 LOC106578252 coding downstream 171560 17052162 ~ 17176942 (+)
telo2 telo2 coding downstream 307121 17187723 ~ 17204657 (+)
LOC118942040 ift140 coding downstream 324684 17205286 ~ 17219864 (+)
LOC118942006 NA coding downstream 436760 17317362 ~ 17318094 (+)
LOC110499072 sost non-coding upstream 2337 16877451 ~ 16920896 (+)
G1669029 NA non-coding upstream 35681 16844253 ~ 16844591 (+)
G1669022 NA non-coding upstream 78520 16801553 ~ 16801752 (+)
G1669019 NA non-coding upstream 83052 16796155 ~ 16797220 (+)
G1669056 NA non-coding downstream 1326 16881928 ~ 16882141 (+)
G1669061 NA non-coding downstream 4284 16884886 ~ 16885119 (+)
G1669063 NA non-coding downstream 7786 16888388 ~ 16888694 (+)
G1669050 NA non-coding downstream 11644 16892246 ~ 16892479 (+)
G1669066 NA non-coding downstream 15157 16895759 ~ 16896151 (+)
LOC110498755 LOC106589324 other upstream 339835 16535724 ~ 16540437 (+)
LOC110499058 LOC106589328 other upstream 574051 16140837 ~ 16306628 (+)
LOC110499057 LOC106589330 other upstream 744505 16134445 ~ 16135964 (+)
G1667601 NA other upstream 1539088 15339612 ~ 15341184 (+)
LOC118941995 LOC105021261 other downstream 572885 17453487 ~ 17457043 (+)
G1670091 NA other downstream 692229 17572831 ~ 17577262 (+)
G1670125 LOC105007702 other downstream 836434 17717036 ~ 17812707 (+)
G1670129 NA other downstream 871692 17752294 ~ 17760812 (+)
G1670126 NA other downstream 886879 17767481 ~ 17773702 (+)

Expression


Co-expression Network