G1670125 (LOC105007702)


Basic Information

Item Value
gene id G1670125
gene name LOC105007702
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 17717036 ~ 17812707 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1910833
gccattctttcacctgacagctagccagccggagagacggggaacaggatagggaaacagtgcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccaactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccataaaccgtaacccctcagtggcggtgtactacaccaaccgtactctgtgccaagtgaagctgcaagcagaacgacaaagccctggcggactgcaagcacgcgctggaactggacctccattctgtcaaagcccacttcttcctgtgccagtgtcacctggagctggagaactacaacgaggccatcggcaacctgcagagagcttacaatctggtcaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcgctaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagtttgtgagaagacaaagaacagggccattctttcacctgacagctagccagccggagagacggggaacaggatagggaaacagtgcgcagcgggcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccgactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccataaaccgtaacccctcagtggcggtgtactacaccaaccgtactctgtgccaagtgaagctgcaagcagaacgacaaagccctggcggactgcaagcacgcgctggaactggacctccattctgtcaaagcccacttcttcctgtgccagtgtcacctggagctggagaactacaacgaggccatcggcaacctgcagagagcttacaatctggtcaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcgctaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagtttgtgagaagacaaagaacagggccattctttcacctgacagctagccagccggagagacggggaacaggatagggaaacagtgcgcagcgggcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccaactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccataaaccgtaacccctcagtggcggtgtactacaccaaccgtactctgtgccaagtgaagctgcaagcagaacgacaaagccct
>TU1910834
gccattctttcacctgacagctagccagccggagagacggggaacaggatagggaaacagtgcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccaactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccatagtgagtagcaagctactgctcttaaggggaatgatgatgtaaaatgtctacaccttttcagatgactgaaagtctatatgatatgagatattgacactgtcctattcacctactctgaatagatgtcagaatagaagtagcttggtctgatgcactcttacaaaaatagcttgtgcaatatgtaacgtgcgtggttgcacctgtgtgtgtgtgtgtatacatcttgccaacagaaccgtaacccctcagtggcggtgtactacaccaaccgtactctgtgccaagtgaagctgcaagcagaacgacaaagccctggcggactgcaagcacgcgctggaactggacccccattctgtcaaagcccacttcttcctgtgccagtgtcacctggagctggagaactacaacgaggccatcggcaacctgcagagagcttacaatctggtcaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcactaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagtttgtgagaagacaaagaacagggccattctttcacctgacagctagccagccggagagacggggaacaggatagggaaacagtgcgcagcgggcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccgactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccatagtgagtagcaagctactgctcttaaggggaatgatgatgtaaaatgtctacaccttttcagatgactgaaagtctatatgatatgagatattgacactgtcctattcacctactctgaatagatgtcagaatagaagtagcttggtctgatgcactcttacaaaaatagcttgtgcaatatgtaggcctaacatgcgtggttgcacctgtgtgtgtgtatacatcttgccaacagaaccgtaacccctcagtggcggtgtactacaccaaccgtactctgtgccaagtgaagctgcaagcagaacgacaaagccctggcggactgcaagcacgcgctggaactggacctccattctgtcaaagcccacttcttcctgtgccagtgtcacctggagctggagaactacaacgaggccatcggcaacctgcagagagcttacaatctggtcaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcgctaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagtttgtgagaagacaaagaacagggccattctttcacctgacagctagccagccggagagacggggaacaggatagggaaacagtgcgcagcgggcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccgactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccatagtgagtagcaagctactgctcttaaggggaatgatgatgtaaaatgtctacaccttttcagatgactgaaagtctatatgatatgagatattgacactgtcctattcacctactctgaatagatgtcagaatagaagtagcttggtctgatgcactcttacaaaaatagcttgtgcaatatgtaggcctaacatgcgtggttgcacctgtgtgtgtgtatacatcttgccaacagaaccgtaacccctcagtggcggtgtactacaccaaccgtactctgtgccaagtgaagctgcaagcagaacgacaaagccctggcggactgcaagcacgcgctggaactggacctccattctgtcaaagcccacttcttcctgtgccagtgtcacctggagctggagaactacaacgaggccatcggcaacctgcagagagcttacaatctggtcaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcgctaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagtttgtgagaagacaaagaacagggccattctttcacctgacagctagccagccggagagacggggaacaggatagggaaacagtgcgcagcgggcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccaactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccataaaccgtaacccctcagtggcggtgtactacaccaaccgtactctgtgccaagtgaagctgcaagcagaacgacaaagccct
>TU1910846
gccattctttcacctgacagctagccagccggagagacggggaacaggatagggaaacagtgcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccaactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccatacttacaatctggtcaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcactaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagtttgtgagaagacaaagaacagggccattctttcacctgacagctagccagccggagagacggggaagaggatagggaaacagtgcgcagcgggcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccgactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccataaaccgtgtGTAtacttgccaacagaaccgtaacccctcagtggcggtgtactacaccaaccgtactctgtgccaagtgaagctgcaagcagaacgacaaagccctggcggactgcaagcacgcgctggaactggacccccattctgtcaaagc
>TU1910837
atagagaatagtgtacaacatctattgcctgcaccaaccatggaactgggtgatgacacagccaagtatggtgccatacatcgggttcaaactgctgtcttaatcagtgttccgctccataaacgatttaattagccttttattatgttatcaattgttactaatgatccttagcaatagccacatggccgtgacggcgtttacagaggaagcaaataaaggtaaaccaaacttaggttaggttattgaagggaactaatagtaaattggcagttgaataagtgttattattatgcctactcacagtcgatactgatagtggttaatatttaacatgatagaaataggagacaaagtcggggtagcctataattaagacattcaggagtgtccatccctgcaagttaaaaggccgtacaataaaattctgcataatggcacggcatgtcccagtgtgtaatcttggtttcatcagcccagaaaatattgtttctcatgtctgagaggccttcaagttgtagaactacctcaaggatgatcaatggaaacatgatgcacagctcaatttccagtatcatagcaaatggtctgaatacttatgtaaataaggtatttctgtttttgcaaacatttctaaacctgtttttgttgtgtcattatggggtgttgtgtgtagattgaggggaaaaatgtattaatatattgttagttacgctgtaacataacaatgtggaaaaagtgaaggggtctgaatactttctgaatgcactgtagatgtgcagtattgggtcgagtgcaatttataatgctgtcaacattctaactatacccagtactaggcatctctgaggcagtattacattcatgtctggaccttttctgtcggcagcttacaatctggtcaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcgctaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagtttgtgagaagacaaagaacagggccattctttcacctgacagctagccagccggagagacggggaacaggatagggaaacagtgcgcagcgggcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccaactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccataaaccgtaacccctcagtggcggtgtactacaccaaccgtactctgtgccaagtgaagctgcaagcagaacgacaaagccct
>TU1910844
ccattttcaaaaaactaaaattttaattgatacacagctttatagggctggggttcccacacgaccatatttccatctcacagcgcttatttacggaagacagagtggactacctgagctaattagcaatctgtttctccgaatacgcctgctgtgtgaagacagacgccacaaacgtgttgttactgaaaaatactgttctgtgttaaccggttaagaccgtgtacagtaggtgtgtatttttttgcattagtgaaattattttgatgtgatatgaacctagagggatttatttcaagaaccgtaacgttactgcaactgagaatcgattcacgtttagatggcttccagagctaattctccctttaaatataacatgtacctaaggtcattggacaaaggagtaacgctaggctaagtttaattccactattgggctaacgttagcatcgttgcttagctgtgggatgtgggattgtagcagacgtttgactcagtaaaccatatcagcaaaccaatggggaaagtccacggtctttaccaacgcaactagctagctagctaccttgttttgtgtagtgacacagggactgagggagggcgcaacgtcagccattagctagttagcgtagttttgacatacagtcctttcagtgtggtcatggccaggtggtgtgcccgataatgactggttttaatgcgtctcaaccattgacttcagcatcttagttgcacaaccatatgttgatgcataactagctagccagtgaaatgtgagggctcaatgtatgagttgcaacagcacctcaccacacgcagcagcaactgttgctgatgctgcctatctttcttttctagtttgtgagaagacaaagaacagggccattctttcacctgacagctagccagccggagagacggggaacaggatagggaaacagtgcgcagcgggcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccaactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccataaaccgtaacccctcagtggcggtgtactacaccaaccgtactctgtgccaagtgaagctgcaagcagaacgacaaagccct
>TU1910838
tttgtgtacatagagaatagtgtacaacatctattgcctgcaccaaccatggaactgggtgatgacacagccaagtatggtgccatacatcgggttcaaactgctgtcttaatcagtgttccgctccataaacgatttaattagccttttattatgttatcaattgttactaatgatccttagcaatagccacatggccgtgacggcgtttacagaggaagcaaataaaggtaaaccaaacttaggttaggttattgaagggaactaatagtaaattggcagttgaataagtgttattattatgcctactcacagtcgatactgatagtggttaatatttaacatgatagaaataggagacaaagtcggggtagcctataattaagacattcaggagtgtccatccctgcaagttaaaaggccgtacaataaaattctgcataatggcacggcatgtcccagtgtgtaatcttggtttcatcagcccagaaaatattgtttctcatgtctgagaggccttcaagttgtagaactacctcaaggatgatcaatggaaacatgatgcacagctcaatttccagtatcatagcaaatggtctgaatacttatgtaaataaggtatttctgtttttgcaaacatttctaaacctgtttttgttgtgtcattatggggtgttgtgtgtagattgaggggaaaaatgtattaatatattgttagttacgctgtaacataacaatgtggaaaaagtgaaggggtctgaatactttctgaatgcactgtagatgtgcagtattgggtcgagtgcaatttataatgctgtcaacattct
>TU1910841
tttgtgtacatagagaatagtgtacaacatctattgcctgcaccaaccatggaactgggtgatgacacagccaagtatggtgccatacatcgggttcaaactgctgtcttaatcagtgttccgctccataaacgatttaattagccttttattatgttatcaattgttactaatgatccttagcaatagccacatggccgtgacggcgtttacagaggaagcaaataaaggtaaaccaaacttaggttaggttattgaagggaactaatagtaaattggcagttgaataagtgttattattatgcctactcacagtcgatactgatagtggttaatatttaacatgatagaaataggagacaaagtcggggtagcctataattaagacattcaggagtgtccatccctgcaagttaaaaggccgtacaataaaattctgcataatggcacggcatgtcccagtgtgtaatcttggtttcatcagcccagaaaatattgtttctcatgtctgagaggccttcaagttgtagaactacctcaaggatgatc
>TU1910845
tggaatatttgtgtacatagagaatagtgtacaacatctattgcctgcaccaaccatggaactgggtgatgacacagccaagtatggtgccatacatcgggttcaaactgctgtcttaatcagtgttccgctccataaacgatttagttagccttttattatgttatcaattgttactaatgatccttagcaatagccacatggccgtgacggcgtttacagaggaagcaaataaaggtaaaccaaacttaggttaggttattgaagggaactaatagtaaattggcagttgaataagtgttattattatgcctactcacagtcgatactgatagtggttaatatttaacatgatagaaataggagacaaagtcggggtagcctataattaagacattcaggagtgtccatccctgcaagttaaaaggccgtacaataaaattctgcataatggcacggcatgtcccagtgtgtaatcttggtttcatcagcccagaaaatattgtttctcatgtctgagaggccttcaagttgtagaactacctcaaggatgatcaatggaaacatgatgcacagctcaatttccagtatcatagcaaatggtctgaatacttatgtaaataaggtatttctgtttttgcaaacatttctaaacctgtttttgttgtgtcattatgggg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1910833 False 1471 TUCP 0.55 8 17717036 17740543
TU1910834 False 2770 lncRNA 0.51 8 17717036 17740543
TU1910846 False 747 TUCP 0.55 4 17717036 17779374
TU1910837 False 1366 lncRNA 0.44 3 17735619 17740543
TU1910844 False 1169 lncRNA 0.46 2 17739140 17740543
TU1910838 False 830 lncRNA 0.38 2 17741296 17763151
TU1910841 False 549 lncRNA 0.39 2 17741296 17747536
TU1910845 True 680 lncRNA 0.38 2 17762315 17812707

Neighbor

gene id symbol gene type direction distance location
LOC118942045 NA coding upstream 101586 17607281 ~ 17615450 (+)
LOC118942044 NA coding upstream 111870 17600129 ~ 17605166 (+)
LOC118942043 NA coding upstream 129849 17580590 ~ 17587187 (+)
LOC118942042 LOC105021261 coding upstream 221295 17484324 ~ 17495741 (+)
LOC118941996 LOC105021261 coding upstream 237105 17476413 ~ 17479931 (+)
LOC118942046 NA coding downstream 25386 17838093 ~ 17843090 (+)
LOC110499153 LOC106589263 coding downstream 1282175 19094882 ~ 19201695 (+)
LOC110499151 LOC106589264 coding downstream 1394545 19207252 ~ 19242695 (+)
LOC110499149 LOC106589267 coding downstream 1482416 19295123 ~ 19303669 (+)
LOC110499145 LOC106589268 coding downstream 1498663 19311370 ~ 19350990 (+)
G1670123 NA non-coding upstream 2120 17714548 ~ 17714916 (+)
G1670116 NA non-coding upstream 23330 17688037 ~ 17693706 (+)
G1670114 NA non-coding upstream 25571 17685924 ~ 17691465 (+)
G1670094 NA non-coding upstream 111316 17580653 ~ 17605720 (+)
G1670158 NA non-coding downstream 3472 17816179 ~ 17816492 (+)
G1670159 NA non-coding downstream 16059 17828766 ~ 17833051 (+)
G1670174 NA non-coding downstream 193538 18006245 ~ 18006459 (+)
G1670208 NA non-coding downstream 237355 18050062 ~ 18050619 (+)
G1670209 LOC105007702 non-coding downstream 262393 18051611 ~ 18132470 (+)
G1670091 NA other upstream 139774 17572831 ~ 17577262 (+)
LOC118941995 LOC105021261 other upstream 262942 17453487 ~ 17457043 (+)
LOC110498756 LOC106589319 other upstream 1030941 16657491 ~ 16706241 (+)
LOC110498755 LOC106589324 other upstream 1176599 16535724 ~ 16540437 (+)
LOC110499058 LOC106589328 other upstream 1410815 16140837 ~ 16306628 (+)
G1671091 NA other downstream 2415088 20227795 ~ 20228168 (+)
G1672918 NA other downstream 3276696 21089403 ~ 21089830 (+)
G1672973 NA other downstream 3327818 21140525 ~ 21191078 (+)

Expression


Co-expression Network