G1670233 (LOC105021261)


Basic Information

Item Value
gene id G1670233
gene name LOC105021261
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18163784 ~ 18223302 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1911009
aaccgtaacccctcagtggcggtgtactacaccaaccgtactctgtgccaagtgaagctgcaagcagaacgacaaagccctggcggactgcaaggaactggacccccattctgtcaaagcccacttcttcctgtgccagtgtcacctggagctggagaactacaacgagtccatcggcaacctgcagagagcttacaatctggccaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcgctaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagtttgtgagaagacaaagaacagggccattctttcacctgacagctagccagccggagagacggggaacaggatagggaaacagtgcgctgcagagccaccagagaagatggctagcagcccagagaagagttccac

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase CHIP

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1911009 True 493 lncRNA 0.54 3 18163784 18223302

Neighbor

gene id symbol gene type direction distance location
LOC118942046 NA coding upstream 320694 17838093 ~ 17843090 (+)
LOC118942045 NA coding upstream 548334 17607281 ~ 17615450 (+)
LOC118942044 NA coding upstream 558618 17600129 ~ 17605166 (+)
LOC118942043 NA coding upstream 576597 17580590 ~ 17587187 (+)
LOC118942042 LOC105021261 coding upstream 668043 17484324 ~ 17495741 (+)
LOC110499153 LOC106589263 coding downstream 871580 19094882 ~ 19201695 (+)
LOC110499151 LOC106589264 coding downstream 983950 19207252 ~ 19242695 (+)
LOC110499149 LOC106589267 coding downstream 1071821 19295123 ~ 19303669 (+)
LOC110499145 LOC106589268 coding downstream 1088068 19311370 ~ 19350990 (+)
LOC118942048 NA coding downstream 1152937 19376239 ~ 19378591 (+)
G1670209 LOC105007702 non-coding upstream 31314 18051611 ~ 18132470 (+)
G1670216 NA non-coding upstream 55371 18100153 ~ 18108413 (+)
G1670215 NA non-coding upstream 74167 18083482 ~ 18089617 (+)
G1670208 NA non-coding upstream 113165 18050062 ~ 18050619 (+)
G1670174 NA non-coding upstream 157325 18006245 ~ 18006459 (+)
G1670197 LOC106593034 non-coding downstream 113543 18336845 ~ 18362915 (+)
G1670248 NA non-coding downstream 137818 18361120 ~ 18364878 (+)
G1670185 NA non-coding downstream 146344 18369646 ~ 18391878 (+)
G1670201 NA non-coding downstream 147924 18371226 ~ 18742987 (+)
G1670254 NA non-coding downstream 240974 18464276 ~ 18486211 (+)
G1670125 LOC105007702 other upstream 384410 17717036 ~ 17812707 (+)
G1670126 NA other upstream 390082 17767481 ~ 17773702 (+)
G1670129 NA other upstream 402972 17752294 ~ 17760812 (+)
G1670091 NA other upstream 586522 17572831 ~ 17577262 (+)
G1671091 NA other downstream 2004493 20227795 ~ 20228168 (+)
G1672918 NA other downstream 2866101 21089403 ~ 21089830 (+)
G1672973 NA other downstream 2917223 21140525 ~ 21191078 (+)
G1673044 NA other downstream 3073070 21296372 ~ 21296854 (+)

Expression


Co-expression Network