G1680412


Basic Information

Item Value
gene id G1680412
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 27666772 ~ 27667080 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1922290
atcctggacttcctgacgggcctccccccaGGTGCTAAGGGCAGGTAACAACACACCCGGCACGCTGATAATCAACACAGTGGCCCCTCAggtgtgcgtgctcagccccctcctgttctccctgttcactcatgactgcacgaccaggcacgactccaacaccatcattaagttttctgatgacacaacagtggtaggcctgatcaccgacaacgatgagacagccaatagggaggaggtcagagacctgaccgtgtggtgcaaggacaacaacctctccctcaatgtgatcaagacaaaggagatgat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1922290 True 309 lncRNA 0.55 1 27666772 27667080

Neighbor

gene id symbol gene type direction distance location
map3k21 LOC106589668 coding upstream 39987 27610623 ~ 27626785 (+)
rgs17 LOC106589666 coding upstream 132288 27494428 ~ 27534484 (+)
phactr2 LOC106589662 coding upstream 302669 27307243 ~ 27364103 (+)
cog2 cog2 coding upstream 374680 27280844 ~ 27292092 (+)
galnt2 LOC106589660 coding upstream 424916 27149393 ~ 27241856 (+)
LOC110499283 LOC106589675 coding downstream 9513 27676593 ~ 27683907 (+)
LOC100136337 tnfaip3 coding downstream 103662 27770742 ~ 27786519 (+)
arfgef3 arfgef3 coding downstream 147309 27814389 ~ 27858095 (+)
lhb LOC100135809 coding downstream 197788 27864868 ~ 27866512 (+)
adss2 LOC106589688 coding downstream 276687 27943767 ~ 27969322 (+)
G1680411 NA non-coding upstream 148 27666381 ~ 27666624 (+)
G1680395 NA non-coding upstream 26968 27639339 ~ 27639804 (+)
G1680394 NA non-coding upstream 30289 27635801 ~ 27636483 (+)
G1680393 NA non-coding upstream 31667 27634651 ~ 27635105 (+)
G1680392 NA non-coding upstream 32703 27633695 ~ 27634069 (+)
G1680415 NA non-coding downstream 3941 27671021 ~ 27671257 (+)
G1680420 NA non-coding downstream 6960 27674040 ~ 27674484 (+)
G1680421 NA non-coding downstream 7849 27674929 ~ 27675280 (+)
G1680423 NA non-coding downstream 21891 27688971 ~ 27693140 (+)
G1680611 NA non-coding downstream 41152 27708232 ~ 27708458 (+)
G1680230 NA other upstream 290953 27375354 ~ 27375819 (+)
G1679823 NA other upstream 579309 27084426 ~ 27087463 (+)
G1679135 NA other upstream 891092 26700392 ~ 26775680 (+)
LOC110499259 LOC106589644 other upstream 1010661 26654584 ~ 26656111 (+)
LOC110499256 LOC106589642 other upstream 1033574 26632095 ~ 26639269 (+)
G1681180 NA other downstream 1050281 28717361 ~ 28726495 (+)
G1681792 NA other downstream 1110926 28778006 ~ 28778409 (+)
lhcgr lhr other downstream 1790148 29437357 ~ 29458499 (+)
LOC110499316 LOC106589729 other downstream 1905355 29572397 ~ 29588171 (+)
G1686317 LOC106589755 other downstream 4987274 32654354 ~ 32661648 (+)

Expression


Co-expression Network