G1693321 (LOC106589878)


Basic Information

Item Value
gene id G1693321
gene name LOC106589878
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 39665252 ~ 39668313 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1936760
AGGTATACTTGTTTGTTTTAGGTAGTTTGTACACTAGAAAGGTTTTTAACATAGATTCATTCCCACTTGATTTGAAAATCAACTTCCTCTTTTCAAGCTTCTTCGTTGTGCACTGATACAAATATTAACTTGTGAGGTTAAGGTCTGTTTTGCTGTGTTCTGATCTCTACAGAATCAGGCAGGTTTTCCACGTTTTCTGTTTTCTCTTCAGCTGAAGATCTAGGTCCAGCAGCAGAGCCAGGAAGTTCCTGTTAGGGtaaatggctcttttctggattacTTTCTGAAGAGCACAATGGAGGGGGATGTGACAATACAACATGAGGTACGCCAACACCAAGGTAGACGATCTGCTCATACCCATAATGCAATGGACGAGAATCTtccctggagaggagagaagaggagagaggagaattgtttgttttatatatttaacctttatttatccagtcAATTAAGAACTAATTGTTATTTGGAATGACGGCTTGAGAAGTGGCGAGAAAAGATGAAAAGAGAGAAGAAAGTGATGGAGAGGGATTAGTGAGAGGCCACCGTGTTATTAATATCATACATGACTGCCTGCCTCAAACTGTGGCCTTTCTGTTCCTTTCAGAGATCTAAAAATAGTTTCCATAATTCATTGCCTTTGATCATTTAAGTTGcctttgcagagagagagaggcctaggCTGCTTGGCTGTCACATAATTCCAATGTTGCCTGTCCTCTGGTGGTGAGGCTCTCTGAGAGGATCCATGGTTAGACTTTATAAAATTCTGCAAGGTAAGATTTCTTATTCTTCTTTGTGTGGATTGGAAGTAGTCACTCTATAACTAACTATTCAATGTGCTTTACGGGGACAGGCTTGGGTACTGTGGgaatgggttgaggtcggtgctATACAGGGACAGAGTGGTGTACTGTGGgaatgggttgaggtcggtgctATACAGGGACAGAGTGGTGTACTGTGGgaatgggttgaggtcggtgctATACAGGGACAGAGTGGTGTACTGTGGgaatgggttgaggtcggtgctATTCAGGGACAGAGTGGTGTACTGTGGgaatgggttgaggtcggtgctATTCAGGGACAGAGTGGTGTACTGTGGGAATGGGTTGAGATCGGTGCTATACAGGGACAGAGTGGTGTACTGTGGGAATGGGTTGAGATCGGTGCTATACAGGGACAGAGTGGTGTACTGTGGAAATGGGTTGAGATCGATGCTATTCAGGGACAGAGTGGTGTACTGTGGGAATGGGTTGAGGTTGGTGCTATACAAGGACAGAGTGGTGTACTCTGGGAATGAGTTAAGGTCGgtgatactgtatatagggacAGAGTGGTGTACTCTGGGAAGGAGTTGAGGTTGGTGCTTTTGTAAAGACCAAATGTCAGCCTAACAGATGAAATGTGTCAACTTCAAATGATCTTTTTTGCTTTTCATAACTCTGCATGTAAAGATATTTCTATATAAAATTACAGGGAAAATCaacagttgctacatccatttttggacttattcttgaagaatataacttctaAATGTTTAGTTGAACTGTCGtagcccatcagaacccaaaatataagcttgtttaacaccaatgtttgcaaacactggaaatgtaaacaaacaaacaaagccaGGCAAAACACTTTGTTAtagtttcaactgctgattgtccCTACTTGACTTAGAATAGGAGTCTTACCATCTGGTTGTTTCAATGCTTTGTGAATGAAATCAGCTGCGGGCTTGAAGTAAACATCCAGATCAAAGTGAGTCGAGTCCTCTGCTGGAATACCATAATAAACAAAGCTGTTGCCATAAAATCTGTGGTCCCCTATGCTGCCTCGCTTGGAATGAGCAGCGTTTAAAACATGAGTGACGCCTAACTTCTGTAAGGTACTCCTGTTTTGGGCTATTGCCCTGgtaagacaaagagagagaaggtggtGAGACTGAACTATTGTAAATGTAGTGCAGCACTAGCTATATTAGTTTGTCAAATAGTTTTCAACTCGTCAGAAACTGTACCAACGATAAACAATACTTCTGTTGAATTACATTAGATGTTTGCAGTAGCCTGTGATATGACCTTGGGTTATAGTTGATCTGTTTACTGTGACATCGACATAGAATTTATCATAACTGCATGAGTATTTTTATCTACAAATGCTTGAACTATAAACTAAGTGTAATGAGGTTAAGATTAATAATTATTCAAAGAATACTTACACATTTCCTATGAATATGTTCGGCCAAACCTCATTTATCTGGGTCAACCGCAACGTGCAAGAATCCAAAATCTTTTCCAAGTCCTTCACAGATGGGTACTCTTTCCTGGGTTCTTTTTTGGTCTTCCGGAATGCCATTATTCCAATTCCAAATTCCCCTCAAATTACAAATGAATGACTAGGCTACTACTCAATGTTTTCAGTGTGTTAAAGCAGCAGTACACTCTATACTCCCACTTCAGCTGATATGTGTGAGCTGGCGTTTGTTTACCCTCACTGGGACAGTTACCCAATGTAGCGCTCAGGCTAAGTCAGGCAGAGGGCAGGATCACAAACTGGCGGCTGTGACTGTGTCCTTTCACACCACCCCGGGTGTGTGTCCG

Function

NR:

description
PREDICTED: dual specificity protein phosphatase 13 isoform A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1936760 True 2630 lncRNA 0.42 4 39665252 39668313

Neighbor

gene id symbol gene type direction distance location
LOC110499546 LOC106589879 coding upstream 46872 39516539 ~ 39618380 (+)
LOC118942017 NA coding upstream 246301 39416869 ~ 39418951 (+)
LOC110499465 LOC106589883 coding upstream 469052 39124078 ~ 39196200 (+)
LOC118942069 NA coding upstream 514850 39143956 ~ 39150402 (+)
plaub plau coding upstream 546402 39110890 ~ 39118850 (+)
LOC110499467 LOC106589877 coding downstream 2737 39671050 ~ 39678438 (+)
LOC110499468 vdac2 coding downstream 15282 39683595 ~ 39687922 (+)
mgme1 mgme1 coding downstream 771608 40439921 ~ 40443984 (+)
ephx5 LOC105009996 coding downstream 786481 40454794 ~ 40467136 (+)
LOC110499485 NA coding downstream 819643 40487956 ~ 40490785 (+)
G1693316 NA non-coding upstream 7060 39656836 ~ 39658192 (+)
G1693313 NA non-coding upstream 8684 39638075 ~ 39656568 (+)
G1693312 NA non-coding upstream 23643 39637881 ~ 39641609 (+)
G1693289 NA non-coding upstream 86222 39576326 ~ 39579030 (+)
G1693215 NA non-coding upstream 253484 39411514 ~ 39411768 (+)
G1693340 NA non-coding downstream 60333 39728646 ~ 39746677 (+)
G1693575 NA non-coding downstream 103677 39771990 ~ 39772253 (+)
G1693582 NA non-coding downstream 109461 39777774 ~ 39778014 (+)
G1693584 NA non-coding downstream 109821 39778134 ~ 39778385 (+)
G1693695 NA non-coding downstream 210515 39878828 ~ 39879186 (+)
G1693184 NA other upstream 305617 39356345 ~ 39359635 (+)
G1692702 NA other upstream 824981 38839934 ~ 38840271 (+)
G1692568 NA other upstream 952961 38710951 ~ 38712291 (+)
G1692406 NA other upstream 1095806 38568269 ~ 38569446 (+)
G1691992 NA other upstream 1436701 38228015 ~ 38228551 (+)
G1693699 NA other downstream 213036 39881349 ~ 39881843 (+)
G1693700 NA other downstream 213645 39881958 ~ 39882625 (+)
G1693914 NA other downstream 543209 40211522 ~ 40212953 (+)
G1695272 NA other downstream 1949714 41618027 ~ 41618505 (+)
LOC110499605 LOC106590859 other downstream 2841318 42484544 ~ 42511247 (+)

Expression


Co-expression Network