LOC110500893 (tada2b)


Basic Information

Item Value
gene id LOC110500893
gene name tada2b
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 54961826 ~ 54966157 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578412.2
CACTCCAGCACGCAGGCCCTCCCTCCGCGGCACTGCTGCTTCCAACAACAAGCAGAAGCCAGCAACATGGCCGACCTAGGAAAGAAGTACTGCGTAAACTGCCTTGCAGACGTTACGAATCTGCGGCTTCGCTGTACTGACTGTCCAGATATCGAACTTTGTCCGGAGTGCTTCTCCGCGGGTGCAGAAATCGGTAATCACCGGCGATGGCACGGTTATCAGCAAGTCGACGGCGGGCGCTTCACCCTCTGGGGTCCCGAAGCGGAGGGAGGATGGACTAGCAGGGAAGAGCAGTCGCTCCTCGACGCGATCGAGCAATATGGCTTTGGAAACTGGGAGGACATGGCCACTCATGTAGGGGCGTCTCGGACCCCCCAGGATGTCATGGACCACTATGTCGGCATGTACATCCATGGCAACCTGGGAAAGGCCTGCGTCCCCGACAGCATCCCCAACCGGGTGACGGATCACACCTGCCCCAGCGGCGGCCCCCTGTCCCCCAGCCTCACCACCCCCCTGCCTCCCCTGGACGTGACCCTGGGCGAGCAGCAACAGCTGGGCTACATGCCGCTCCGCGACGACTATGAGATGGAGTACGACCAGGAGGCGGAGAAGCTCATCAGTGGCCTGTCGGTCAACTACGACGATGAAGACGTGGAGATCGAGATGAAGCGCGCGCACGTGGACATGTACGTGCGCAAGCTTCGTGAGCGCCAGCGCCGCAAAAATGTGGCCCGCGACTACAACCTGGTGCCCGTCTTCCTAGGCCGCGACAAGAAGGAGAAGCAAAGCACGCTGGGAgttgtaggtggtggtggtggcgtcGCCGTCGGAGCGGTGGGGAGCCTTCCGACGCCAACCACTCCCGCGGTGACGCCGGGAGCTCCAGCCGTTCCGACAGTGCCGAAGCGTAAGATCCCcaaggaggagaaggagcagcGGATCAAGTTACGGGGGATGTGCCAGTTCATGGCTCAGCGGGAGTTTGAGGACTTGTTCCACAACATGCACAAGGAGCGCGTGCTGCGCGCCAAAGTACGGGAGCTGCAGCGCTACCGCCGCAACGGCATCGCGCGACTGGACGAGGCGGCCGAGTACGAGGCGGCGAGGCACAAACGGGAGAAACGCAAGGAGAACAAGAGCGTAGCTACCTCGAAAACGGGCCGGGGCGGAGGGCTCGGCACAGGAGGAGGGCTTGGCGGAGGGACAGGAGGTGGCGGAGTCATCAAAGAGGAGGGCAAGGATGGAGAGTTCCCGGCCATAGAGAACCTGGCGGGCTTCGAGCTGCTGTCAGACCGGGAGAAGGTGCTGTGCAATTCACTTAACCTCAGCCCCACGCGCTACCTGACAGTCAAGACAATCATCATCAAGGACCACCTGCAGAAGAGCCAGGGCATTCCCTCCAAGAGCCGGCTGCCCAGCTACCTAGACAAGGTGCTCAAGAAACGCATCCTCAGCTTCCTCACAGAGAGCGGCTGGATATCCCGGGATGCATCCTAACAATCCATTGGGTTTGTAGGGACTGGGACACGTCCTAACAATCCATTGGGTTTGTAGGGACTGGGACACGTCCTAACAATCCATTGGGTTTGTAGGGACTGGGACACGTCCTAACAATCCATTGGGTTTGTAGGGACTGGGACACGTCCTAACAATCCATTGGGTTTGTAGGGACTGGGACACGTCCTAACAATCCATTGGGTTTGTAGGGACTGGGACACGTCCTAACAATCCATTGGGTTTGTAGGGACTGGGACACGTCCTAACAATCCATTGGGTTTGTAGGGACTGGGACACGTCCTAACAATCCATTGGGTTTGTAGGGACTGGGACACGTCCTAACAATCCATTGGGTTTGTAGGGACTGGGACACGTTCTAACAATCCATTGGGTTTGTAGGGTCTGGGACACGTCCTAACAATGTGTATGGAGTTTGTGGGGACTGGGACAGGTCCTAACAATGTGTATGGAGTTTGTGGGGACTAAGGATTGCAGAGGGACAATGACTCTTGTTCTCTGTTGGATTGTTGCGTCTCTGTGTCTTGTTATAAACAATGTGAGATGTGTCGTGAGCTCCAGATTGGACCAAGCTGAATTTTACCACCTTTTGTCAAGTTCTGACCCAAGTCGTCGACCACCGGACTGTTTGTGAATATGTACATTGCAAAAGATTTCCTCTTTCTTCAAAAAAAGTTTGGATACCATTTACTGGAGAACGTggaacaaatatatatttttgtatttgcaTCCATATGAATGATAATGTATGGGTAGATGATACATTCTCTTTATTGCAGTGAAGGATCACCTAATACTACTGGGTAAACCAGACAACACTGTTTTTCAAAGCGGTTCTCAAAAGTATAAATAGTTGTGTAGTTTGTCTCCAGCTTCCTGTTAGtatggtcccagatcagttggtgccatcttgccaactcctatggtcattggcaAGACGATACAAAcagttctgggaccaggctagcttcCTTTTAGGTTAGGATGTTGTCTTGGAGAGCACAGGTTAGTGCCTATTCAAACAGCAATACAGCCGCACTGTGTTGGAAAGCAGgggttatcatcatcatcattcttaCCATGAAAAGATGGCCTGCTAAGCATAGAGGGGTCAGTATTTGGCAGCTAACGCTTTCATAAAGCACTGCGGTAATCCCCATTATGACGCTGTAGCTTTGTGGTGTTGTCAGGCTCAGAATGTGGCACTGTGAGGGGAGTAGATAAGCCTCCATACTGTTCTGTTCCACACGTTGCACGTTTTCTGATTCTAGTAGGCGATTCACTCTACTCGACTTCTAAAGAAAATAAAAAGCTTTAAAAATCGCCATTAACCAATGACATGCGATCCTAAAGCACAAATCAAAAACGTTGCATATCTATTTTTCTCACCCCCGGTTAAgtttgcctgccccttgtttgGAGGGGCGTTGTGGGGTTAACGGTGTGTCGTCCTGCCAGGCTGGTTTTAGCCTCTTCATGAATACGCGCTGCATGATTATTGTATTGTGACTCGTTGCTCGCTGTTTAGTTTGCTACTGTTCCATCTATTCAAAGGGAGTTAAGTCATCGTttaaaacaacaaaaaagaagTGATATACCTGCTACATTTGCTCCATCTATCTTCCTGGTTCATTGTTTTACAGTCACATTGTTCAATTAAGGCTAGTGGAGTGGTTCTCAAAGTAGGGGTTGTGAAACCGAATGGGGAAAATAGcttttgttgttgatgtttggAACCACTGGGTTAGTGTTCACATATGGCCTTGCAAGAAAACTATCAAAGGGCAGAAATATTCTGGTTGAAGAGAAAAAAGGACGACTGCCACAGTTGGACCTGGTTTTCCATTATGTGAAATGTGTTTGTTCCAAGCACGGGTGCTTTAAAATGTCCCGTGGCACCTTCTCCCTACGATGTCCAGTTAGCCTGTTTTAAAACGGAGGTGAACTTCAGTAGAGATGGGGATTGGTTGTATAGAAACAGTATTACATTAGACACTGTGAAATAATGTTGTGTGTGACTGCATTCGTATAGGCCTTAATATTAGTATTCCATCATAGTACATTTACCATACCACAGAGGAAATATTTTTCTTCCCCATAAGCCTCTGAGTATCCGGACACTGACAAGGCCCCTTGGTTCTCCCATCATCTACttgaagattttttatttttgtccCAACAACTGGCGTAGTTCACAATCAAAGACGACATATCTCCTTATCTGGTTTAAGGCTAAAACAACTGTTCAAGGGTGTTAGTATGTtctgtattaaaaatgaaaatccTTTATAC
>XM_036958239.1
CACTCCAGCACGCAGGCCCTCCCTCCGCGGCACTGCTGCTTCCAACAACAAGCAGAAGCCAGCAACATGGCCGACCTAGGAAAGAAGTACTGCGTAAACTGCCTTGCAGACGTTACGAATCTGCGGCTTCGCTGTACTGACTGTCCAGATATCGAACTTTGTCCGGAGTGCTTCTCCGCGGGTGCAGAAATCGGTAATCACCGGCGATGGCACGGTTATCAGCAAGTCGACGGCGGGCGCTTCACCCTCTGGGGTCCCGAAGCGGAGGGAGGATGGACTAGCAGGGAAGAGCAGTCGCTCCTCGACGCGATCGAGCAATATGGCTTTGGAAACTGGGAGGACATGGCCACTCATGTAGGGGCGTCTCGGACCCCCCAGGATGTCATGGACCACTATGTCGGCATGTACATCCATGGCAACCTGGGAAAGGCCTGCGTCCCCGACAGCATCCCCAACCGGGTGACGGATCACACCTGCCCCAGCGGCGGCCCCCTGTCCCCCAGCCTCACCACCCCCCTGCCTCCCCTGGACGTGACCCTGGGCGAGCAGCAACAGCTGGGCTACATGCCGCTCCGCGACGACTATGAGATGGAGTACGACCAGGAGGCGGAGAAGCTCATCAGTGGCCTGTCGGTCAACTACGACGATGAAGACGTGGAGATCGAGATGAAGCGCGCGCACGTGGACATGTACGTGCGCAAGCTTCGTGAGCGCCAGCGCCGCAAAAATGTGGCCCGCGACTACAACCTGGTGCCCGTCTTCCTAGGCCGCGACAAGAAGGAGAAGCAAAGCACGCTGGGAgttgtaggtggtggtggtggcgtcGCCGTCGGAGCGGTGGGGAGCCTTCCGACGCCAACCACTCCCGCGGTGACGCCGGGAGCTCCAGCCGTTCCGACAGTGCCGAAGCGTAAGATCCCcaaggaggagaaggagcagcGGATCAAGTTACGGGGGATGTGCCAGTTCATGGCTCAGCGGGAGTTTGAGGACTTGTTCCACAACATGCACAAGGAGCGCGTGCTGCGCGCCAAAGTACGGGAGCTGCAGCGCTACCGCCGCAACGGCATCGCGCGACTGGACGAGGCGGCCGAGTACGAGGCGGCGAGGCACAAACGGGAGAAACGCAAGGAGAACAAGAGCGTAGCTACCTCGAAAACGGGCCGGGGCGGAGGGCTCGGCACAGGAGGAGGGCTTGGCGGAGGGACAGGAGGTGGCGGAGTCATCAAAGAGGAGGGCAAGGATGGAGAGTTCCCGGCCATAGAGAACCTGGCGGGCTTCGAGCTGCTGTCAGACCGGGAGAAGGTGCTGTGCAATTCACTTAACCTCAGCCCCACGCGCTACCTGACAGTCAAGACAATCATCATCAAGGACCACCTGCAGAAGAGCCAGGGCATTCCCTCCAAGAGCCGGCTGCCCAGCTACCTAGACAAGGTGCTCAAGAAACGCATCCTCAGCTTCCTCACAGAGAGCGGCTGGATATCCCGGGATGCATCCTAACAATCCATTGGGTTTGTAGGGACTGGGACACGTCCTAACAATCCATTGGGTTTGTAGGGACTGGGACACGTCCTAACAATCCATTGGGTTTGTAGGGACTGGGACACGTCCTAACAATCCATTGGGTTTGTAGGGACTGGGACACGTCCTAACAATCCATTGGGTTTGTAGGGACTGGGACACGTCCTAACAATCCATTGGGTTTGTAGGGACTGGGACACGTCCTAACAATCCATTGGGTTTGTAGGGACTGGGACACGTCCTAACAATCCATTGGGTTTGTAGGGACTGGGACACGTCCTAACAATCCATTGGGTTTGTAGGGACTGGGACACGTTCTAACAATCCATTGGGTTTGTAGGGTCTGGGACACGTCCTAACAATGTGTATGGAGTTTGTGGGGACTGGGACAGGTCCTAACAATGTGTATGGAGTTTGTGGGGACTAAGGATTGCAGAGGGACAATGACTCTTGTTCTCTGTTGGATTGTTGCGTCTCTGTGTCTTGTTATAAACAATGTGAGATGTGTCGTGAGCTCCAGATTGGACCAAGCTGAATTTTACCACCTTTTGTCAAGTTCTGACCCAAGTCGTCGACCACCGGACTGTTTGTGAATATGTACATTGCAAAAGATTTCCTCTTTCTTCAAAAAAAGTTTGGATACCATTTACTGGAGAACGTggaacaaatatatatttttgtatttgcaTCCATATGAATGATAATGTATGGGTAGATGATACATTCTCTTTATTGCAGTGAAGGATCACCTAATACTACTGGGTAAACCAGACAACACTGTTTTTCAAAGCGGTTCTCAAAAGTATAAATAGTTGTGTAGTTTGTCTCCAGCTTCCTGTTAGtatggtcccagatcagttggtgccatcttgccaactcctatggtcattggcaAGACGATACAAAcagttctgggaccaggctagcttcCTTTTAGGTTAGGATGTTGTCTTGGAGAGCACAGGTTAGTGCCTATTCAAACAGCAATACAGCCGCACTGTGTTGGAAAGCAGgggttatcatcatcatcattcttaCCATGAAAAGATGGCCTGCTAAGCATAGAGGGGTCAGTATTTGGCAGCTAACGCTTTCATAAAGCACTGCGGTAATCCCCATTATGACGCTGTAGCTTTGTGGTGTTGTCAGGCTCAGAATGTGGCACTGTGAGGGGAGTAGATAAGCCTCCATACTGTTCTGTTCCACACGTTGCACGTTTTCTGATTCTAGTAGGCGATTCACTCTACTCGACTTCTAAAGAAAATAAAAAGCTTTAAAAATCGCCATTAACCAATGACATGCGATCCTAAAGCACAAATCAAAAACGTTGCATATCTATTTTTCTCACCCCCGGTTAAgtttgcctgccccttgtttgGAGGGGCGTTGTGGGGTTAACGGTGTGTCGTCCTGCCAGGCTGGTTTTAGCCTCTTCATGAATACGCGCTGCATGATTATTGTATTGTGACTCGTTGCTCGCTGTTTAGTTTGCTACTGTTCCATCTATTCAAAGGGAGTTAAGTCATCGTttaaaacaacaaaaaagaagTGATATACCTGCTACATTTGCTCCATCTATCTTCCTGGTTCATTGTTTTACAGTCACATTGTTCAATTAAGGCTAGTGGAGTGGTTCTCAAAGTAGGGGTTGTGAAACCGAATGGGGAAAATAGcttttgttgttgatgtttggAACCACTGGGTTAGTGTTCACATATGGCCTTGCAAGAAAACTATCAAAGGGCAGAAATATTCTGGTTGAAGAGAAAAAAGGACGACTGCCACAGTTGGACCTGGTTTTCCATTATGTGAAATGTGTTTGTTCCAAGCACGGGTGCTTTAAAATGTCCCGTGGCACCTTCTCCCTACGATGTCCAGTTAGCCTGTTTTAAAACGGAGGTGAACTTCAGTAGAGATGGGGATTGGTTGTATAGAAACAGTATTACATTAGACACTGTGAAATAATGTTGTGTGTGACTGCATTCGTATAGGCCTTAATATTAGTATTCCATCATAGTACATTTACCATACCACAGAGGAAATATTTTTCTTCCCCATAAGCCTCTGAGTATCCGGACACTGACAAGGCCCCTTGGTTCTCCCATCATCTACttgaagattttttatttttgtccCAACAACTGGCGTAGTTCACAATCAAAGACGACATATCTCCTTATCTGGTTTAAGGCTAAAACAACTGTTCAAGGGTGTTAGTATGTtctgtattaaaaatgaaaatccTTTATAC
>TU2007965
CAGAAGCCAGCAACATGGCCGACCTAGGAAAGAAGTACTGCGTAAACTGCCTTGCAGACGTTACGAATCTGCGGCTTCGCTGTACTGACTGTCCAGATATCGAACTTTGTCCGGAGTGCTTCTCCGCGGGTGCAGAAATCGGTAATCACCGGCGATGGCACGGTTATCAGCAAGTCGACGGCGGGCGCTTCACCCTCTGGGGTCCCGAAGCGGAGGGAGGATGGACTAGCAGGGAAGAGCAGTCGCTCCTCGACGCGATCGAGCAATATGGCTTTGGAAACTGGGAGGACATGGCCACTCATGTAGGGGCGTCTCGGACCCCCCAGGATGTCATGGACCACTATGTCGGCATGTACATCCATGGCAACCTGGGAAAGGCCTGCGTCCCCGACAGCATCCCCAACCGGG

Function

symbol description
tada2b Predicted to enable chromatin binding activity and transcription coactivator activity. Predicted to be involved in chromatin remodeling; positive regulation of histone acetylation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of histone acetylation. Predicted to be part of SAGA-type complex. Predicted to be active in nucleus. Is expressed in female organism. Orthologous to human TADA2B (transcriptional adaptor 2B).

NR:

description
transcriptional adapter 2-beta-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578412.2 False 3810 mRNA 0.50 2 54961826 54966157
XM_036958239.1 False 3772 mRNA 0.50 3 54961826 54966157
TU2007965 True 408 TUCP 0.59 2 54965176 54966105

Neighbor

gene id symbol gene type direction distance location
sorcs2 LOC106577493 coding downstream 36333 54518078 ~ 54925493 (-)
LOC110500733 NA coding downstream 755380 54203826 ~ 54206446 (-)
LOC118936296 NA coding downstream 758310 54202804 ~ 54203516 (-)
LOC110500734 NA coding downstream 765060 54195072 ~ 54196766 (-)
LOC110500730 LOC106608572 coding downstream 777174 54073119 ~ 54184661 (-)
LOC110500742 NA coding upstream 1967 54968124 ~ 54976618 (-)
LOC110500745 LOC106608548 coding upstream 32823 54998980 ~ 55001213 (-)
ccl36.1 LOC106608548 coding upstream 38188 55004345 ~ 55007926 (-)
LOC110500746 tbc1d14 coding upstream 44927 55011084 ~ 55070874 (-)
LOC110500747 kiaa0232 coding upstream 105398 55071555 ~ 55086712 (-)
G1754099 NA non-coding downstream 26491 54935134 ~ 54935335 (-)
G1754091 NA non-coding downstream 42150 54919388 ~ 54919676 (-)
G1754063 NA non-coding downstream 92586 54868890 ~ 54869240 (-)
G1754061 NA non-coding downstream 103263 54857402 ~ 54858563 (-)
G1754031 NA non-coding downstream 105270 54799031 ~ 54856556 (-)
G1754113 NA non-coding upstream 7017 54973174 ~ 54975906 (-)
G1754111 NA non-coding upstream 28143 54994300 ~ 54996332 (-)
G1753656 LOC106608548 non-coding upstream 31915 54998072 ~ 55007902 (-)
G1754138 NA non-coding upstream 70279 55036436 ~ 55037656 (-)
G1754055 NA other downstream 112743 54843065 ~ 54849083 (-)
G1753637 NA other downstream 929520 54031582 ~ 54032306 (-)
G1752321 LOC103370121 other downstream 1456815 53502919 ~ 53505011 (-)
G1752268 NA other downstream 1542501 53418400 ~ 53419325 (-)
LOC110500888 peli3 other downstream 1556142 53370137 ~ 53405755 (-)
LOC110500749 s100p other upstream 140529 55106685 ~ 55107622 (-)
G1754243 NA other upstream 306061 55272218 ~ 55273949 (-)
G1755310 NA other upstream 1423900 56390057 ~ 56390566 (-)
G1755322 NA other upstream 1440425 56406582 ~ 56407318 (-)
G1757073 NA other upstream 2935929 57902086 ~ 57902593 (-)

Expression


Co-expression Network