LOC110500772 (rbpms)



Basic Information


Item Value
gene id LOC110500772
gene name rbpms
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 59375396 ~ 59440544 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036958297.1
agatgggagaactttcctcGTCAAGGTCTGCCTTGCCGTAGTGCAGTTAAATGAATAGTTATTTTCATCTCACTCCTCGGGGCGCGCAGTGGTTCTGGAAAGATTTCCTGGGAATATTGCATTCTAATGAGGAATATGTCTTCGTGTTAACGGGTTATCTAGATCTATATCCAGAACCATTTCAATATCTATCAGTTTATCTGTCAGTTGACTTTTAACATTGACTTATTTTATTAATGCCGGGAAACTAGGAAAAAGCTAGAGGTACAATAGCTTACACAGGACAGCGGTCGGCACACGGCTTGTTCTTCTGTTTTCTCCGGAGAAGGATAGAACCAAACAAAAGGCGGTCCAAGATAAAGAGATAACTGTCTCAGAATGAATAACAATACTGAGAAAGAGAACGAATCGACTGAATTCACCAGTCATGAAGAGGAGGTCCGCACGTTATTTGTCAGTGGACTACCTCTGGATATAAAGCCGCGGGAGCTGTATCTCCTGTTCAGACCATTTAAGGGTTATGAGGGATCATTGATAAAACTCACCTCAAAACAGCCAGTGGGGTTTGTCAGCTTTGACAGCCGATCAGAGGCAGAAGCTGCCAAGAATGCTTTGAACGGTGTCCGCTTCGACCCGGAGATCCCCCAGACTCTGCGGCTGGAGTTTGCCAAAGCCAACACCAAGATGGCCAAGAACAAGCTGGTGGGCACTCccaaccctcctccctcccagCAGAGCCCTGGCCCACAGTTTATCAACAGAGACCCATATGAGCTCACAGTACCCGCTCTGTACCCTGGCGGCCCAGACATGTGGGCGTCATACCCGCTGTACCCGGCGGAGCTGTCGCAAGCCCTCCCTCCTGCTTTCACCTACCCCTCCTCACTTCACACTCAGATTCGCTGGCTCCCTCCTGCAGATGGAACTCCCCAGGGATGGAAGTCCAGGCAGTTCTGTTGAGGTTCATGATGTGTGATGGTGGCCACGGTCGGCCTTGATGGTGTTGCTGGCGGTTCTCATGTCCAAACCAGGAGGACTCCTGACCTTGTTTACCGCACAGTGGACCGTTGGCAACAACAACCTCACGGGCCTCAGGACATTCCAGACCCAAGCCGCCATcacacatcaccccccccccccctcccaccctgCTACAACCCCCCTTTTTATACTGTTACATACTCAAGAATTACTGATGACACTTTGGTTCCAGTCCAATACATAAGACCTTATGATGCCTTATGAGAATGACATAGTCTAACATACAGACTATGTTCCAATATCCCTGCTagcacacacactaccgttcaaaagtttggcgtctcttagaaatgtccttgtttttgaaagaaagcacttttttctttgatccattaaaataacatcaaattgatcagaaatacagtgtagatattgttcatgttgtaaatgactattgtagctggacacGGCTGATTCCAGCTAACACaacgtggattagctaacacaacgtggattagctaacacaacgtggatttagctaacacaacgtggattagctaacacaacgtggatttagctaacacaacgtggatttagctaacacaacgtggatttag
>XM_036958298.1
aaggagatgggagaactttcctcGTCAAGGTCTGCCTTGCCGTAGTGCAGTTAAATGAATAGTTATTTTCATCTCACTCCTCGGGGCGCGCAGTGGTTCTGGAAAGATTTCCTGGGAATATTGCATTCTAATGAGGAATATGTCTTCGTGTTAACGGGTTATCTAGATCTATATCCAGAACCATTTCAATATCTATCAGTTTATCTGTCAGTTGACTTTTAACATTGACTTATTTTATTAATGCCGGGAAACTAGGAAAAAGCTAGAGGTACAATAGCTTACACAGGACAGCGGTCGGCACACGGCTTGTTCTTCTGTTTTCTCCGGAGAAGGATAGAACCAAACAAAAGGCGGTCCAAGATAAAGAGATAACTGTCTCAGAATGAATAACAATACTGAGAAAGAGAACGAATCGACTGAATTCACCAGTCATGAAGAGGAGGTCCGCACGTTATTTGTCAGTGGACTACCTCTGGATATAAAGCCGCGGGAGCTGTATCTCCTGTTCAGACCATTTAAGGGTTATGAGGGATCATTGATAAAACTCACCTCAAAACAGCCAGTGGGGTTTGTCAGCTTTGACAGCCGATCAGAGGCAGAAGCTGCCAAGAATGCTTTGAACGGTGTCCGCTTCGACCCGGAGATCCCCCAGACTCTGCGGCTGGAGTTTGCCAAAGCCAACACCAAGATGGCCAAGAACAAGCTGGTGGGCACTCccaaccctcctccctcccagCAGAGCCCTGGCCCACAGTTTATCAACAGAGACCCATATTCGCTGGCTCCCTCCTGCAGATGGAACTCCCCAGGGATGGAAGTCCAGGCAGTTCTGTTGAGGTTCATGATGTGTGATGGTGGCCACGGTCGGCCTTGATGGTGTTGCTGGCGGTTCTCATGTCCAAACCAGGAGGACTCCTGACCTTGTTTACCGCACAGTGGACCGTTGGCAACAACAACCTCACGGGCCTCAGGACATTCCAGACCCAAGCCGCCATcacacatcaccccccccccccctcccaccctgCTACAACCCCCCTTTTTATACTGTTACATACTCAAGAATTACTGATGACACTTTGGTTCCAGTCCAATACATAAGACCTTATGATGCCTTATGAGAATGACATAGTCTAACATACAGACTATGTTCCAATATCCCTGCTagcacacacactaccgttcaaaagtttggcgtctcttagaaatgtccttgtttttgaaagaaagcacttttttctttgatccattaaaataacatcaaattgatcagaaatacagtgtagatattgttcatgttgtaaatgactattgtagctggacacGGCTGATTCCAGCTAACACaacgtggattagctaacacaacgtggattagctaacacaacgtggatttagctaacacaacgtggattagctaacacaacgtggatttagctaacacaacgtggatttagctaacacaacgtggatttag

Function


symbol description
rbpms Predicted to enable RNA binding activity. Acts upstream of or within erythrocyte differentiation. Orthologous to human RBPMS (RNA binding protein, mRNA processing factor).

NR:

description
RNA-binding protein with multiple splicing-like isoform X3

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K25091 RBPMS; RNA-binding protein with multiple splicing

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036958297.1 False 1598 mRNA 0.47 9 59375396 59440540
XM_036958298.1 True 1474 mRNA 0.46 8 59375396 59440544

Neighbor


gene id symbol gene type direction distance location
LOC110500775 dmrta1 coding downstream 91271 59282169 ~ 59284125 (-)
LOC110500776 glu2b coding downstream 94734 58961261 ~ 59280662 (-)
LOC110500778 LOC106608531 coding downstream 862996 58508576 ~ 58512400 (-)
LOC110500779 LOC106608532 coding downstream 866916 58499259 ~ 58508480 (-)
LOC110500784 ing2 coding downstream 931450 58441167 ~ 58443946 (-)
dctn6 LOC106608510 coding upstream 14171 59454715 ~ 59460683 (-)
trnay-gua-65 NA coding upstream 159977 59600521 ~ 59600607 (-)
trnay-gua-66 NA coding upstream 160655 59601199 ~ 59601285 (-)
trnay-gua-67 NA coding upstream 161331 59601875 ~ 59601961 (-)
trnay-gua-68 NA coding upstream 162009 59602553 ~ 59602639 (-)
G1758203 NA non-coding downstream 20198 59354356 ~ 59355198 (-)
G1758201 NA non-coding downstream 21247 59352809 ~ 59354149 (-)
G1758177 NA non-coding downstream 27247 59343822 ~ 59348149 (-)
G1758194 NA non-coding downstream 34585 59340444 ~ 59340811 (-)
G1758156 NA non-coding downstream 68428 59306663 ~ 59306968 (-)
G1758362 NA non-coding upstream 74070 59514614 ~ 59514862 (-)
G1758364 NA non-coding upstream 75718 59516262 ~ 59533218 (-)
G1758417 NA non-coding upstream 172124 59612668 ~ 59651669 (-)
G1758424 NA non-coding upstream 178684 59619228 ~ 59622300 (-)
G1758428 NA non-coding upstream 194039 59634583 ~ 59637718 (-)
G1758095 NA other downstream 179906 59192432 ~ 59195490 (-)
G1757692 NA other downstream 569571 58800174 ~ 58805825 (-)
G1757130 NA other downstream 1332339 58042650 ~ 58043057 (-)
G1757074 NA other downstream 1466262 57908139 ~ 57909134 (-)
G1757073 NA other downstream 1472803 57902086 ~ 57902593 (-)
G1758845 NA other upstream 583223 60023767 ~ 60024903 (-)
G1758890 NA other upstream 681998 60122542 ~ 60123364 (-)
G1758915 NA other upstream 747866 60188410 ~ 60225587 (-)
LOC118942962 LOC106608456 other upstream 918286 60352810 ~ 60370197 (-)
G1759103 NA other upstream 1087843 60528387 ~ 60528790 (-)

Expression



Co-expression Network