LOC110500790 (LOC106608490)


Basic Information

Item Value
gene id LOC110500790
gene name LOC106608490
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 59918360 ~ 59941835 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578324.2
AAAAGGAAGGGTTGTAAGAGACCGATCTATTGCTTTCTTGCCTCCTTGTCCTGCTATTTCAACCCCCCATTTTACCATATAAATCTCTGCATACTCGCGCATGCGCGTTACGCAATCTACCGGATAGCGAGGTAGGGGAGCTGTACTAATGGCGGAGAACGTACGGTCGCCTTTTGAGTACCGGGAGCCACCGACCCTCGACAGCGACGGGGATGGGAGCAAACCGCCTTTGCCGCCCCGGGGGAGGGGGTGTGTCAGGAAAAGGAAGGGTACCCCTGTGAAGGTGTGTGACCGGGCCTACGTGacagaggatgaagaggaggaggaagaggagagtctgtctgaacacagctacagtccagGTGATGGACAGTACCCGGACGGAGCGGAGGACAGACTGCCTCCGACCGGAAGCCCTTACTACCTCGCCGACCCCTCCCAGCTCTGTGTGTCGGAGCTGGGCGAGGAGGGGGCGAGTGGGGTCCGGGGGCCAGTGCTCTTCCACCCCCCGCCCAACTGTAGGATCCGAGAGGTGCACTGCGGGAGTCAGGTGCGGCTGGTCGTCATAGCGATTCGAGACATCGCCAAAGGGGAGGAGATCACAGTGGACTACAGCCTGATGGACTGGGGAGAGAACGCCATGGATGAAGAGCCTGGCCCCCACCCGCTGTCTCTCTCCGACTACCTCACCCCCTCCtggtccctctccccctcctcctccccgctAACCCACACTGAGCCCAGCGATTCGGaccgagaggaggaggaggaagacgacGATGACGACGaagaagaagagatggaggagttGAGGGGCCGCATGCTCCGCCGCCGAAAGAAGCGCAAAATAGCCACCCCCCCCGTCACCGCCAAGAAGAAGAGTGTCGCCACCCCCAGGGCCGGACCCGGGCGCCCCTGCTCATCCTCCTTCTCCCGGCTGGCTGCCTCCTCGACCCCGACCGTGGCCCAGACCCCGTCTCAGCCCGCCACCCCACTGGCGCCCCCCACcaccaacatcaacaacaacatcaacataaACATCGGCAGCTCCAGCGGGGCCACTGTCAGCCGACGGCAGCACTGCCCCTATTGCGGCCGCCACTACCGCTCTCTGGCACGCCACCTGGAGAAACACCATGCCAACCAGCCAGAGGTCAGGGCTGCCATGGAGCTGTCCGCACTCCACACACAcccttcctcctctacctcctcctcgcACGGCCACATCTTCGCCTCCCCTCAgccttcctcttcctctactcccgcccctccccctcttttctccagggagagagagagggatgcggTGGCCGCTCGAAGTTCCTCGGGGGCGGTCTCCTTTTCACTCTCGCTCTCCCCGCCCTCGGCTTCTCAGTCGGCCGCGGCCAAAAAAGCCTCCAACGTATCGGTTCAGACGCCCAAGCCAGGCTCCGCCCCTGCGGTGGCCCCGGTGAAAAGTCCTCCAACATCCACGCCACCCAGGAGGGGCCGCAAGccgaagagagagaaggaggagcagcAGAAAGCGGAGGAGTCCATCAGGAGCAAAGAGGAAGAGATACCTCCACCTCCTACCCCCAAGCCGGAGGAAGAAGAGCTGGATGAGGAGCTGAGTGGAGCGGGGACCGTAGAGAGTCCTGGGGACTGGAGTACACAGCTGGCTAGcTCCCACAGACAACAcatgccccctctcctctcttccctctcctgccTGGTGCTCTACCTGAGCCGGCAGCAGCACTCTTCCTTCTTGTCTCTCACTCGCTCCCCCAGTTCGGCTGAGGCCTGGCGCCTCCTCTGCCATTCCAGCCTGGCGCTGCTCATCCTCTACAACCGCCACCGAGAGTGTGAAGTGGCCAAGCTCACCACCCAGGACTACCACAACCGCACCACCCCCCAAAGCCCCACCCTGACCCAGGCTAACTCGGCCAACACCCCCCCGACAGGCATGGAGGCCATCCTCTCCCCCTTCGAGCATCAGGTCCTCTGCCACCTCCCCCGGGCAGGTGTGCTGGGCAAGCGGGGGCGCATCCAGCCCCTCATCCTGCCCCCGCACTGCGAGTCCTGCCTGGAGCTGCTCCTTCAGACCTCCTCCAACGTGGGCGTCGACCCCCACAGCCCCTACGTCTTCTCCCGGCCCTTCCACTCGCCCGCCACGCCGCTCCGGGGCACCGACCTACTGCGCAACCTGGCGCGGGCCAGCGGCGCCAAGAACCCCCGGGCGTTGACCCAGACACGGGCGCGCCAGCAGGTAGCCATTCTCACCCAGCTACTGCTCCTGGAGGAAGGCGAGGGGCAGGGCCAGCCGGGCGGGGCTGCCGCCAAGCGCCTGGAAGACTTCCTGCAGAGGGAGTACCACGTGACCCAGAGCTGCGCCACGATAGGCCGAGACCCGGCGCTGATGGGCCGTGTGGGCAGGGTGGTGATCTATGGGGAAAAGGAGGGGGTCCTCTTCAGAGGGATGAGTCTGCAGCACATCTGTCTAGAGCTGGATGTGATGTCAGGAAACTCTGCGGACTCCTTCTCAGACGACTCAGACGTGGAGGCGGAGAAGGTTAAGGAGAAGGTTAAGGAGAAGGTTAAAGAGAAGGTtaaggagaaggtggaggagaaGGTGGGGGAGGTGAAGAAGCAACCAGGTCAACCCCCCAGCAAGAATAAAGCCCCTGCTCCCTCCTCGGTCAACCCCTCGCTCCCTGGTGCCCACAAGAGGAGGGTCATTCAGCCCAAGTCCGGGAAGCGTGGGGTGCTGAAGCGGCCCTGGTCGGAGGCGGAGCGCATCGCCGTGGAGACGCACCTGAAGAGGAACATCATGGAGCAGCGCGTGCCAGCCAAGGCGGACTGCGAGCGCTGCCTGCAGCTCTGTCCCCTGCTGGTCAGCAACCAGCGAGACTGGAGAGCCATCAAGTTCTACTGCCACAACCGCATCCAGCTACTGAAGAAGCAAGGCAGGAGGGAGAGGGCAGGGAACTCTGTTagatagagatgggagagagcgagagaactgACTTCAACCATCTGGAGTGACCCTATTCTAGTCCTGGAGAAGTGCAGTCTGCTTGTTTTTCGTCCGAATTtacctgacctctgacctgaccTTAAGAGGTCGTTCCTGGGACTAGGTGTGCACCATCAGTCCTAGCCCTGTAGCCCAGTAATGCAGTGTTGTCTTCATCAAGAGTCAAGGAGAGAATTAACTGGGATTAGTTGAAATGTCTCCTCTGACCAGGGGACATATCCACATAGTGTCTCAAAAGGGGTCTAGGAATCCTGTTAAAACTGAGTTTTTAAGACCAAAAAAAAGCCTCCCAGCTCACAGTAGGTTttatgatgttaagacactgaaCAGACAAACTCTGAACCAGGAGTAAAATCAACTCCTAAAAAGGGTTCATCTCAGCTGGTCGTCACGACAGTTTGAGGTACCGCAAAGGAAAGATGGTGATGAGTCTCATCGTTGTAAATTATTGGAAATAACCAATCACGAAGAGGCATGGCCAGCTGTGACCTGTATAGCACATTTTCAGACACCCAGATGAATGTGACTTTACATCAAATGTTGCAATGGTAAAACACTTGGTATAATTTCTCTGACACGATCACTTTGCCTAACTCCTAATTATTGCCTAATATGTTGGCATGCATAACcttcttctttatttttattttttttaccaattctgatgttttttttaaaaagcgTGAGTTTTAGAATATGGTCGCTAAAACTCTGAACTCCTGGATGATTactctaaatgtattttgtacaGTACTGTAGGCATCACGTCTCTTACTGATAATGTTGCATTAAAACCTGTCATTTTCAACACCCAATCAAAGTTAACATAGGCCCTAAATACCTTCAGTGGCCCAATATTACTTAGGCATGTTATTTAACAGTGTTGCAGGCATTCAAATGATCAAGACACCTGCCGGTAACTCTTAACTGGTGAGGTCAGATCATGAGGTCTCTTAAATATCTGTCAACTAGTTTAGGTTTAATGCCtagcttttattttttatttttttttaccccgtaAGAGTAGGAGTAAAATGTCTCTATTCTCAGCACTTACGACACATTTTCTACTcctgagacgctttgtggatacgggccctggATTACGAAACAACAGTCCTAGAAGTTCCTGGAGAATCCCGAGTTTTAAAACCCTTGTTGTTATTTCAATCTGTTGGGACAGTATACAGGGAAATGACTGAGAAAGTGAGGGAGttcagaggagtggacctccaccTCCACTGAAAGCTGAAGACCAAATGTGAATATTACGTTGTCTTTacagagatggaggaagaaacACATGGATTAAAGAGCTTAAGGAGCTGTTTGATATGGATAACTGACTGTCATATGGATTAAACcaatatgaccccccccccccccctagaatGAGCATACATGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGAGTCAAGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGAGTCAAGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGAATTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGAATTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTATGGATAAGTGACTGGCGTGAACTCTAACCATTACCATTAGCTGTGTTTTTAACAGTGTCGATCAAAGTATTGGACCATGATGCACCAGTGAACTTGTTCACGCACAACTCTGTACCACGGTTTCAGTTAAAACGGATATGAAACAAGGCACGCATACTTTACATTGTTTGTCAtgtcttgtttttattttattttatataatttgTAGTCATTTTACTCGACAATATAATGTGGTCTTGTTAGTAACAAATGTAAATACGTGTTAATCAAGAATGAAATTTGATGTAGTAGTGGTTCTAAAGTTGGTCGTATTGTGCTAAGGTGTACATATTGTAAATACCGCATTTTGAAGTGTTTTCTGAACCACAAATTGTAACGTGATATTTTGCACTATGGTAACAGAAGTAACAAAAAAAGGTTATCTGCAGTACTGCAAAAACAAAAtaaactaaaaaaaaaatctgaa
>TU2013733
TGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGAGTCATGTCATATGGGAGGAGCTGTTTGAATTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTGTTTGAATTCATGTCATATGGGAGGAGCTGTTTGATTCATGTCATATGGGAGGAGCTATGGATAAGTGACTGGCGTGAACTCTAACCATTACCATTAGCTGTGTTTTTAACAGTGTCGATCAAAGTATTGGACCATGATGCACCAGTGAACTTGTTCACGCACAACTCTGTACCACGGTTTCAGTTAAAACGGATATGAAACAAGGCACGCATACTTTACATTGTTTGTCAtgtcttgtttttattttattttatataatttgTAGTCATTTTACTCGACAATATAATGTGGTCTTGTTAGTAACAAATGTAAATACGTGTTAATCAAGAATGAAATTTGATGTAGTAGTGGTTCTAAAGTTGGTCGTATTGTGCTAAGGTGTACATATTGTAAATACCGCATTTTGAAGTGTTTTCTGAACCACAAATTGTAACGTGATATTTTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578324.2 False 6448 mRNA 0.52 8 59918360 59941835
TU2013733 True 618 lncRNA 0.37 1 59918436 59919053

Neighbor

gene id symbol gene type direction distance location
stl1 stl1 coding downstream 12735 59896373 ~ 59905625 (-)
mfsd8 mfsd8 coding downstream 37813 59864711 ~ 59880547 (-)
LOC110500793 LOC106608484 coding downstream 161441 59747504 ~ 59756919 (-)
trnar-ucu-120 NA coding downstream 181041 59737141 ~ 59737451 (-)
trnar-ucu-119 NA coding downstream 188181 59730107 ~ 59730179 (-)
LOC100329196 LOC100329196 coding upstream 102 59941937 ~ 59945075 (-)
trnay-gua-290 NA coding upstream 197256 60139091 ~ 60139177 (-)
trnay-gua-291 NA coding upstream 198595 60140430 ~ 60140516 (-)
trnay-gua-292 NA coding upstream 199259 60141094 ~ 60150736 (-)
trnay-gua-293 NA coding upstream 199923 60141758 ~ 60141844 (-)
G1758603 NA non-coding downstream 2362 59915636 ~ 59915998 (-)
G1758602 NA non-coding downstream 5179 59912949 ~ 59913181 (-)
G1758594 NA non-coding downstream 32696 59885268 ~ 59885664 (-)
G1758592 NA non-coding downstream 36650 59881327 ~ 59881710 (-)
G1758587 NA non-coding downstream 55500 59861957 ~ 59862860 (-)
G1758612 NA non-coding upstream 6126 59947961 ~ 59948533 (-)
G1758614 NA non-coding upstream 10632 59952467 ~ 59952746 (-)
G1758615 NA non-coding upstream 13429 59955264 ~ 59955588 (-)
G1758616 NA non-coding upstream 15994 59957829 ~ 59959033 (-)
G1758631 NA non-coding upstream 29752 59971587 ~ 59972868 (-)
G1758095 NA other downstream 722870 59192432 ~ 59195490 (-)
G1757692 NA other downstream 1112535 58800174 ~ 58805825 (-)
G1757130 NA other downstream 1875303 58042650 ~ 58043057 (-)
G1757074 NA other downstream 2009226 57908139 ~ 57909134 (-)
G1757073 NA other downstream 2015767 57902086 ~ 57902593 (-)
G1758845 NA other upstream 81932 60023767 ~ 60024903 (-)
G1758890 NA other upstream 180707 60122542 ~ 60123364 (-)
G1758915 NA other upstream 246575 60188410 ~ 60225587 (-)
LOC118942962 LOC106608456 other upstream 416995 60352810 ~ 60370197 (-)
G1759103 NA other upstream 586552 60528387 ~ 60528790 (-)

Expression


Co-expression Network