LOC100329196 (LOC100329196)


Basic Information

Item Value
gene id LOC100329196
gene name LOC100329196
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 59941937 ~ 59945075 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001171854.1
GAATCAGTTCGTCTGCGTGTCCGTACCTCTCCGGGTTTGGGTGTAAACAGCTGTGCGTCCCTGAAAAACGCCCCTGTCGCTTCCGGAACCAATTACATTCCCCTGTACGTCGCGTTCATACAACTAAATAAAACAAATGGTCAAATTACTGCGACGACGAAATGGACCTCTAGCTCATTCTGCACGTTTTCAAAATATCGAGGTTGGTAGCTTTAGATAGATAAATTAATAAAAGTCTCCATTTCTGTAGTAGGAGAAAAACACTCCGGCTGCTTTCTGCCTGTTACCACCATTGGTTACCACCGACTCACCGCAAACCACCTCGAGTAAATGGCTGATCAGGAGCACATTGAGATAGACACGCTCCTAGACATGCCTGCGCCGGGGCGATCTAGAACGGGGAGAGCAGCGGCTCTGGCTCGGCTACTGCACCAGGACTGCACTTATCTTCTGGAGCTATATagggagagggagagcctcTTGTCAGACCACACCCCAGCGGGGGACCGCAtcgtgtccctctctctgtcctcgccTGACCTCAGCTCTGACGAGCAGGTTCAGCTTCTACACTCAGCCCTGCGCAAATGCTTGGGACTACTGGAGTGTCTCATCCtacgagaggaggaggagatgggtgaGCTAGAGGGCGAGTATGAGACAGTGAGAAAGGGCGTCCGGGATCGACTCGGACATCTGCTTCACAGCACCAAGGTCCTACTGGAAACCGAGGAGGACGTCACCCCAGACCATCAGTGCAATGAGGAGGTTGATGGAGTTGTGGGTACTTTTGGGGCGAAAATGTGGACCTATCGGGTCCTGCTAGAGCTGATCCATTGGGCCAACTCTGCCTCGCAGACCCTTCACGTCCTCCACTccgagagggaagggagagaagatATCTAGTTCCTCTCTCAGTCTAAGATCAGTCAGCTTTCAATAGCAGACATGTTATTAATGAAAATCCTAAGGTATTATGACATATAGTCCCCAATGCGGGGAAGCTTTACTAAAATCACAACTAACCTCCTTTTATGAAATGCTAAAAATGACTTTCATCAGACGATTGTATTCACTATGTTGAGGTGCACCAGCAAGACTTGTTGCAGTAACATTCCTTTGTCAGAAAGGATGGTCATGACATGGATGATGTGTTAAGGTCCCAGGAcagttgttgttattgttgtacaGTCTATTTATTGAAGCGGAACGTCCTTACTGATGAGAAATGTTAAATTATTCTTCCTACTTTTGAGGTAGAATTTGAAGGGGCTTTCTTTAGTTGAAACATTCTAACACTGTTCGAATCATGTCGTAACTAACACTTAAGACTAACGCTAACTGTTAGAATGTAACCAAAAAAAATGACTGATAAACTGTTACTGTGAAAATGTAGCTTACTGATCAATGAAGATAGCTGGTGGTTGACTTGTACCCCATGATGCCAACATATCTCCAGATTCCATTTGTTTAACGTAGGTGAAAAGTGATTCCAACGAAGATAAGGATATGATCATGTAACTGACATACCGATGTTGTGCTCATCTTTTTTTGGTCAGGCAAGTTCAGAAAATAAACTGTGATGGATCACGTTGCTGCATGTTACTGTAATGTCAATGTGGCTATTCACTTACAGTTGGCTAATTGTATGTTCTACATACTTGAAAATGCTGCTAAATTGTTTTAACTTGTTGACGTGTACCTTTTTAGCCAATATTGCTCAGTAGCAAACTGAAtgtgtgtgtagcccaaactgtcaCACCCTCTTCACCCTCCTTCACAGTCTGACACAGCTTCCAAACTCTGACTGAATATTATGATAATGGAAATAACCTccaatttattttttttgttattgtgAGCTTTTCTACTTTGTCAAACATTATCTGTAAATTATTTGGATTTGCACTGAATAttaaactgaagtgggtctag

Function

NR:

description
IL-6 subfamily member ciliary neurotrophic factor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001171854.1 True 1935 mRNA 0.44 3 59941937 59945075

Neighbor

gene id symbol gene type direction distance location
LOC110500790 LOC106608490 coding downstream 102 59918360 ~ 59941835 (-)
stl1 stl1 coding downstream 36312 59896373 ~ 59905625 (-)
mfsd8 mfsd8 coding downstream 61390 59864711 ~ 59880547 (-)
LOC110500793 LOC106608484 coding downstream 185018 59747504 ~ 59756919 (-)
trnar-ucu-120 NA coding downstream 204618 59737141 ~ 59737451 (-)
trnay-gua-290 NA coding upstream 194016 60139091 ~ 60139177 (-)
trnay-gua-291 NA coding upstream 195355 60140430 ~ 60140516 (-)
trnay-gua-292 NA coding upstream 196019 60141094 ~ 60150736 (-)
trnay-gua-293 NA coding upstream 196683 60141758 ~ 60141844 (-)
trnay-gua-294 NA coding upstream 197359 60142434 ~ 60142520 (-)
G1758603 NA non-coding downstream 25939 59915636 ~ 59915998 (-)
G1758602 NA non-coding downstream 28756 59912949 ~ 59913181 (-)
G1758594 NA non-coding downstream 56273 59885268 ~ 59885664 (-)
G1758592 NA non-coding downstream 60227 59881327 ~ 59881710 (-)
G1758612 NA non-coding upstream 2886 59947961 ~ 59948533 (-)
G1758614 NA non-coding upstream 7392 59952467 ~ 59952746 (-)
G1758615 NA non-coding upstream 10189 59955264 ~ 59955588 (-)
G1758616 NA non-coding upstream 12754 59957829 ~ 59959033 (-)
G1758631 NA non-coding upstream 26512 59971587 ~ 59972868 (-)
G1758095 NA other downstream 746447 59192432 ~ 59195490 (-)
G1757692 NA other downstream 1136112 58800174 ~ 58805825 (-)
G1757130 NA other downstream 1898880 58042650 ~ 58043057 (-)
G1757074 NA other downstream 2032803 57908139 ~ 57909134 (-)
G1757073 NA other downstream 2039344 57902086 ~ 57902593 (-)
G1758845 NA other upstream 78692 60023767 ~ 60024903 (-)
G1758890 NA other upstream 177467 60122542 ~ 60123364 (-)
G1758915 NA other upstream 243335 60188410 ~ 60225587 (-)
LOC118942962 LOC106608456 other upstream 413755 60352810 ~ 60370197 (-)
G1759103 NA other upstream 583312 60528387 ~ 60528790 (-)

Expression


Co-expression Network