G1758005


Basic Information

Item Value
gene id G1758005
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 58956490 ~ 58957506 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2012961
tagaccagttaacccactgttcctagaccagttaacccactgttcctagaccagttaacccactgttcccctgaacaaggcagttaacccactgttcccctgaacaaggcagttaaccccactgttcccctgaacaaggcagttaaccccactgttcccctgaacaaggcagttaaccccactgttcccctgaacaagacagttaacccactgttcccctgaacaaggcagttaacccactgttcccctgaacaaggcagttaaccccactgttcccctgaacaaggcagttaaccccactgttcccctgaacaaggcagttaaccccactgttcccctgaacaagacagttaacccactgttcccctgaacaaggcagttaacccactgttcc
>TU2012962
tagaccagttaacccactgttcctagaccagttaacccactgttcctagaccagttaacccactgttcccctgaacaaggcagttaacccactgttcccctgaacaaggcagttaaccccactgttcccctgaacaaggcagttaaccccactgttcccctgaacaaggcagttaaccccactgttcccctgaacaagacagttaacccactgttcccctgaacaaggcagttaaccccactgttcccctgaacaaggcagttaaccccactgttcccctgaacaagacagttaacccactgttcccctgaacaaggcagttaacccactgttcc
>TU2012963
tagaccagttaacccactgttcctagaccagttaacccactgttcctagaccagttaacccactgttcccctgaacaaggcagttaacccactgttcccctgaacaaggcagttaaccccactgttcccctgaacaaggcagttaaccccactgttcccctgaacaaggcagttaaccccactgttcccctgaacaagacagttaacccactgttcccctgaacaaggcagttaaccccactgttcccctgaacaagacagttaacccactgttcccctgaacaaggcagttaacccactgttcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2012961 False 394 lncRNA 0.51 2 58956490 58957506
TU2012962 False 335 lncRNA 0.51 2 58956490 58957506
TU2012963 True 305 lncRNA 0.51 2 58956490 58957506

Neighbor

gene id symbol gene type direction distance location
LOC110500778 LOC106608531 coding downstream 444090 58508576 ~ 58512400 (-)
LOC110500779 LOC106608532 coding downstream 448010 58499259 ~ 58508480 (-)
LOC110500784 ing2 coding downstream 512544 58441167 ~ 58443946 (-)
LOC118942958 NA coding downstream 578015 58372150 ~ 58378475 (-)
LOC118942959 NA coding downstream 758240 58195260 ~ 58198250 (-)
LOC110500776 glu2b coding upstream 3755 58961261 ~ 59280662 (-)
LOC110500775 dmrta1 coding upstream 324663 59282169 ~ 59284125 (-)
LOC110500772 rbpms coding upstream 417890 59375396 ~ 59440544 (-)
dctn6 LOC106608510 coding upstream 497209 59454715 ~ 59460683 (-)
trnay-gua-65 NA coding upstream 643015 59600521 ~ 59600607 (-)
G1757805 NA non-coding downstream 43321 58912967 ~ 58913169 (-)
G1757775 elavl2 non-coding downstream 50839 58903264 ~ 58905651 (-)
G1757803 NA non-coding downstream 54842 58899302 ~ 58901648 (-)
G1757790 elavl2 non-coding downstream 64425 58879935 ~ 58892065 (-)
G1757714 NA non-coding downstream 136421 58819773 ~ 58820069 (-)
G1758024 NA non-coding upstream 25991 58983497 ~ 58984258 (-)
G1758025 NA non-coding upstream 31504 58989010 ~ 58991698 (-)
G1758033 NA non-coding upstream 46803 59004309 ~ 59004789 (-)
G1758036 NA non-coding upstream 55387 59012893 ~ 59014063 (-)
G1758086 NA non-coding upstream 206289 59163795 ~ 59164282 (-)
G1757692 NA other downstream 150665 58800174 ~ 58805825 (-)
G1757130 NA other downstream 913433 58042650 ~ 58043057 (-)
G1757074 NA other downstream 1047356 57908139 ~ 57909134 (-)
G1757073 NA other downstream 1053897 57902086 ~ 57902593 (-)
G1755322 NA other downstream 2549172 56406582 ~ 56407318 (-)
G1758095 NA other upstream 234926 59192432 ~ 59195490 (-)
G1758845 NA other upstream 1066261 60023767 ~ 60024903 (-)
G1758890 NA other upstream 1165036 60122542 ~ 60123364 (-)
G1758915 NA other upstream 1230904 60188410 ~ 60225587 (-)
LOC118942962 LOC106608456 other upstream 1401324 60352810 ~ 60370197 (-)

Expression


Co-expression Network