G1758177


Basic Information

Item Value
gene id G1758177
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 59343822 ~ 59348149 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2013163
ACAATTCACTGGAACGTTAAAGTATTTTTATTGTGCAAGaccaattatttaaaaaaaattgttgagTAGAAAAGGACACCTGTTAAATGTACACCAAAGATGACAGGTCCCTTTCTGGATTCAATGGAGAGTTTAATCTTGATTGTTCAAAGGTTGTAGTCACTCTGGAAGTATATCAGCCAACATAATGTTCCTTGCTTTATGAATGTTTGGCAGGTTTTAGCAGGTCACACTGTGGAAATGCTATTCATTTACTAGAGGGGCTATGTCATAAACACTCAAGGTTCCAGAATGGGAtgaaaatggcagccatattggtcaggtagaaatccaaaccagtctaattggagtgaatggcagtagaggcataATCCAGATTTGTTTcatgcaggaaaataaaagtaaggcaTGTGATATATCAGATATTGTGTAATATAATTATTGTCAAACTAAAATATTATCATAGAATAATAAATACAGTTTATACTTGTTTTATACAAATGTTGTGTAGAAATAGCttctaaaatatatgtaaacagatCATAAATGTCTAAATGTTTATTTTCTTTGAAAGCTGTGAGTGCTTttatatgatacaatatcagtacttCTGCATTTAGAACTATgtcctatcatcaactgatttcagccacTGTATCGCTGTGGATTGATTGCATTGGTTCAATGGAATATTGGCAGTTCATTTGAGAAATGGATGGACTCATTCCTCGAAAATTGGCTGGCTAGATAGCTAACAAACATACCAATGCAGATACGTTCAtaaaattcattattttacacaatatcttatcacagcactggtAAACCGCGGTTGACCAACTTCCTGACCAAAATAGCTAACCTTTATACCGTCATTAGAATGTTCATGACCACTCTGGTATTCTAATTCTTAATTCTATGGTCCACAACTTCAGTTAAGGGTTCTTCAGAGGGTGATATGGCCTTCTTCCAATAGTGAAGCTATTGAAGCTATTCTTGGGGGTACATGGGGCTTAGAGAATGAGGGGAAGGCACTGCAAATTTGGACTTATACTTTAAATTTGGCACCTGAGCTAAAGTCTTGACACATATTCTTAAGGTTAGAAAAAACATAATGATACGTGAGATAGAAATTTGTCATGAATCCCTTTAAGCCTTCTTGAAAATCCTCTTGGCATCCACCCCATCGTACACCTTACTGTTGTCTTTCCTGGTGAATTTACCCTTCAACacatctccatccatctcccaggTAAGACTTCGGTGCCGTCGGCCAGCGCGTAGTCAAACTGTACGCCCAGGGTGAAGTCGATGTCTTTGTTACGGAAGGTGCTGGATTCCTTGATGTGGAACTTGTCTCCTGTCTGCTCGATGATAACCTTCAGGTTGTCATGTTCCGCCAACTTCCTCTTCATCACATTGATGCCCATCTGCTCCATGAACTTGTCGTAGTTCTCGTTGTGTTCAACTTTCC
>TU2013164
ACAATTCACTGGAACGTTAAAGTATTTTTATTGTGCAAGaccaattatttaaaaaaaattgttgagTAGAAAAGGACACCTGTTAAATGTACACCAAAGATGACAGGTCCCTTTCTGGATTCAATGGAGAGTTTAATCTTGATTGTTCAAAGGTTGTAGTCACTCTGGAAGTATATCAGCCAACATAATGTTCCTTGCTTTATGAATGTTTGGCAGGTTTTAGCAGGTCACACTGTGGAAATGCTATTCATTTACTAGAGGGGCTATGTCATAAACACTCAAGGTTCCAGAATGGGAtgaaaatggcagccatattggtcaggtagaaatccaaaccagtctaattggagtgaatggcagtagaggcataATCCAGATTTGTTTcatgcaggaaaataaaagtaaggcaTGTGATATATCAGATATTGTGTAATATAATTATTGTCAAACTAAAATATTATCATAGAATAATAAATACAGTTTATACTTGTTTTATACAAATGTTGTGTAGAAATAGCttctaaaatatatgtaaacagatCATAAATGTCTAAATGTTTATTTTCTTTGAAAGCTGTGAGTGCTTttatatgatacaatatcagtacttCTGCATTTAGAACTATgtcctatcatcaactgatttcagccacTGTATCGCTGTGGATTGATTGCATTGGTTCAATGGAATATTGGCAGTTCATTTGAGAAATGGATGGACTCATTCCTCGAAAATTGGCTGGCTAGATAGCTAACAAACATACCAATGCAGATACGTTCAtaaaattcattattttacacaatatcttatcacagcactggtAAACCGCGGTTGACCAACTTCCTGACCAAAATAGCTAACCTTTATACCGTCATTAGAATGTTCATGACCACTCTGGTATTCTAATTCTTAATTCTATGGTCCACAACTTCAGTTAAGGGTTCTTCAGAGGGTGATATGGCCTTCTTCCAATAGTGAAGCTATTGAAGCTATTCTTGGGGGTACATGGGGCTTAGAGAATGAGGGGAAGGCACTGCAAATTTGGACTTATACTTTAAATTTGGCACCTGAGCTAAAGTCTTGACACATATTCTTAAGGTTAGAAAAAACATAATGATACGTGAGATAGAAATTTGTCATGAATCCCTTTAAGCCTTCTTGAAAATCCTCTTGGCATCCACCCCATCGTAGTTATAGCTCTGGTGAATTTACCCTTCAACacatctccatccatctcccaggTAAGACTTCGGTGCCGTCGGCCAGCGCGTAGTCAAACTGTACGCCCAGGGTGAAGTCGATGTCTTTGTTACGGAAGGTGCTGGATTCCTTGATGTGGAACTTGTCTCCTGTCTGCTCGATGATAACCTTCAGGTTGTCATGTTCCGCCAACTTCCTCTTCATCACATTGATGCCCATCTGCTCCATGAACTTGTCGTAGTTCTCGTTGTGTTCAACTTTCC

Function

NR:

description
fatty acid-binding protein, intestinal-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2013163 False 1474 lncRNA 0.38 4 59343822 59348149
TU2013164 True 1464 lncRNA 0.38 4 59343822 59348149

Neighbor

gene id symbol gene type direction distance location
LOC110500775 dmrta1 coding downstream 59697 59282169 ~ 59284125 (-)
LOC110500776 glu2b coding downstream 63160 58961261 ~ 59280662 (-)
LOC110500778 LOC106608531 coding downstream 831422 58508576 ~ 58512400 (-)
LOC110500779 LOC106608532 coding downstream 835342 58499259 ~ 58508480 (-)
LOC110500784 ing2 coding downstream 899876 58441167 ~ 58443946 (-)
LOC110500772 rbpms coding upstream 27247 59375396 ~ 59440544 (-)
dctn6 LOC106608510 coding upstream 106566 59454715 ~ 59460683 (-)
trnay-gua-65 NA coding upstream 252372 59600521 ~ 59600607 (-)
trnay-gua-66 NA coding upstream 253050 59601199 ~ 59601285 (-)
trnay-gua-67 NA coding upstream 253726 59601875 ~ 59601961 (-)
G1758194 NA non-coding downstream 3011 59340444 ~ 59340811 (-)
G1758156 NA non-coding downstream 36854 59306663 ~ 59306968 (-)
G1758154 LOC100194703 non-coding downstream 37437 59306126 ~ 59306385 (-)
G1758138 NA non-coding downstream 51911 59291576 ~ 59291911 (-)
G1758136 NA non-coding downstream 53593 59289983 ~ 59290229 (-)
G1758201 NA non-coding upstream 4660 59352809 ~ 59354149 (-)
G1758203 NA non-coding upstream 6207 59354356 ~ 59355198 (-)
G1758294 NA non-coding upstream 35382 59383531 ~ 59387972 (-)
G1758314 NA non-coding upstream 75536 59423685 ~ 59425015 (-)
G1758317 NA non-coding upstream 80977 59429126 ~ 59430757 (-)
G1758095 NA other downstream 148332 59192432 ~ 59195490 (-)
G1757692 NA other downstream 537997 58800174 ~ 58805825 (-)
G1757130 NA other downstream 1300765 58042650 ~ 58043057 (-)
G1757074 NA other downstream 1434688 57908139 ~ 57909134 (-)
G1757073 NA other downstream 1441229 57902086 ~ 57902593 (-)
G1758845 NA other upstream 675618 60023767 ~ 60024903 (-)
G1758890 NA other upstream 774393 60122542 ~ 60123364 (-)
G1758915 NA other upstream 840261 60188410 ~ 60225587 (-)
LOC118942962 LOC106608456 other upstream 1010681 60352810 ~ 60370197 (-)
G1759103 NA other upstream 1180238 60528387 ~ 60528790 (-)

Expression


Co-expression Network