G1758417


Basic Information

Item Value
gene id G1758417
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 59612668 ~ 59651669 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2013459
gctcagaggaatagagcattagttgaacgtacgaagacctcggggcaatcctcagcagctccaagaaaccaccaaactcagcagattaatttcttaaagggaacatatgcttctgccaaacctctgaccatctagGTGATGGTGTTTGACTACAttttttatccttcgatagctcagttggtagagcggaggactgtaggggaaattgctgtaatccttaggtcgctggttcaaatccggcttgaaggattgtactttttcttgtggcttacgccaactttttgacagcagtgtaccatgacatgtg
>TU2013457
gagcgggaatcaaacccaggtctCGGTGGTAAAAGAAATGAATCCTAACCACttgaccaacagggagagagaaaaagacatttcgcaagctagggggctaaacagcgattttattcctctgcTCACTTTTTGTCAAATCCAAAATGCAACTACTTGCATtataaggggatgtagctcagaggaatagagcattagttgaacgtacgaagacctgggggcaatcctcagcagctccaagaaaccaccaaactcagcagattaatttcttaaagggaacatatgcttctgccaaacctctgactatctaggtgatggcgtttgactacatttgttatccttcgatagctcagttggtagagcggaggactgtaggggaaattgctgtaatccttaggtcgctggttcaaatccggctcgaaggattgtactttttcttgtggcttacgccaactttttgacagcagtgtaccatgacatgtgcttgacaaataatatctttccctgagagaagaaatgttcacttgttgacctttgataggaatgttggtatagcagcagagagttctcgagattgcaacagtccttaggtcgctgactcagaagagtataactttttctgcagttgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2013459 False 307 lncRNA 0.45 3 59612668 59650139
TU2013457 True 627 lncRNA 0.44 2 59649009 59651669

Neighbor

gene id symbol gene type direction distance location
trnay-gua-82 NA coding downstream 534 59612048 ~ 59612134 (-)
trnay-gua-81 NA coding downstream 1212 59611370 ~ 59611456 (-)
trnay-gua-80 NA coding downstream 1890 59610692 ~ 59610778 (-)
trnay-gua-79 NA coding downstream 2568 59610014 ~ 59610100 (-)
trnay-gua-78 NA coding downstream 3246 59609336 ~ 59609422 (-)
trnay-gua-131 NA coding upstream 256 59651925 ~ 59652011 (-)
trnay-gua-132 NA coding upstream 935 59652604 ~ 59652690 (-)
trnay-gua-133 NA coding upstream 1614 59653283 ~ 59653369 (-)
trnay-gua-134 NA coding upstream 2551 59654220 ~ 59654306 (-)
trnay-gua-135 NA coding upstream 3230 59654899 ~ 59654985 (-)
G1758364 NA non-coding downstream 79450 59516262 ~ 59533218 (-)
G1758362 NA non-coding downstream 97806 59514614 ~ 59514862 (-)
G1758317 NA non-coding downstream 181911 59429126 ~ 59430757 (-)
G1758314 NA non-coding downstream 187653 59423685 ~ 59425015 (-)
G1758294 NA non-coding downstream 224696 59383531 ~ 59387972 (-)
G1758412 NA non-coding upstream 22341 59674010 ~ 59685333 (-)
G1758445 NA non-coding upstream 47625 59699294 ~ 59704011 (-)
trnar-ucu-120 NA non-coding upstream 85472 59737141 ~ 59737451 (-)
G1758587 NA non-coding upstream 210288 59861957 ~ 59862860 (-)
G1758592 NA non-coding upstream 229658 59881327 ~ 59881710 (-)
G1758095 NA other downstream 417178 59192432 ~ 59195490 (-)
G1757692 NA other downstream 806843 58800174 ~ 58805825 (-)
G1757130 NA other downstream 1569611 58042650 ~ 58043057 (-)
G1757074 NA other downstream 1703534 57908139 ~ 57909134 (-)
G1757073 NA other downstream 1710075 57902086 ~ 57902593 (-)
G1758845 NA other upstream 372098 60023767 ~ 60024903 (-)
G1758890 NA other upstream 470873 60122542 ~ 60123364 (-)
G1758915 NA other upstream 536741 60188410 ~ 60225587 (-)
LOC118942962 LOC106608456 other upstream 707161 60352810 ~ 60370197 (-)
G1759103 NA other upstream 876718 60528387 ~ 60528790 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location