G1758849


Basic Information

Item Value
gene id G1758849
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 60042706 ~ 60108086 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2014040
GGAATGGTACAAACAGGAGAACATTTGAATGatttaacacacacaaaaacatttctATATATTCCAATCCACATAGCTAAGCCCTAGTTATTTAAGATAGACATTGAGGAATATAAATAGATCTGTAGTGGAATGGTACAAACAGGAGAACATTTGAATGatttaacacacacaaaaacatttctATATATTCCAATCCACATAGCTAAGCCCTAGTTATTTAAGATAGACATTGGGGAATATAAATCAACATGTAGTGATGGAGACTAATTGTCACCTGATTAGAACATATTAAAGACGTACTTTAAAATATAGATTTTCCAACAATCGCCATACATTATTGATGGTCATACACCCAATATGAACAAACTCTGAATTTCTAGGACTTACCACTGCAGTAATAGTTATTGCAAGTCCTTGGAATTGTGTACTTTGAGGGTCATTTAAAGCTTCTACAAACACTTGTTGTATGACGAAAGACatcagtggagcaggttgaagatgtgcagtagttgttgttgttgtagtagtagtatgtgttgttgtggtagttggTGCATTGGTTGTTGTGGTAGTTGGAGCTGTGCTGGTAGTTGTTGACAGTTGTGATGCTGTCCTTGACACTGTAGTTGTGGGGGCCACATATGTGGTGGTTGTAGTTGTGGGTCTCGTTGTAGGAACGGTAGCAGGAACAGGGACAGGTTCTCCAGTTGTTGCGGTGGTAGTACCAGCCACAGTGGTAGTAACAGAAGTTGTAGGAGGAACAATACTTGTAGCAGGAGCAGCTAAGTTAAAACATAAAATGGGCATTTCCACATCTCTTTAAGGCTATGTGGCAGTATAACACAGTCATCGTAACAGATGGGAGTATAACATGATGATCTTATATTGACATCTAAATCAGTAAATGTTGGGCTGTTATGTAATGCACATCTTGCAGCCTGTAAACAGGTTGCAACATTTCACATGGACCACTTCAGCTGAAAACCATTTCTAatgtttacagtgcattcagaccccttgaattccTGCCTGCACTGAGCCTGCCTTCCATCCTGTaactttgccccacctatctcgattactgacctctgcctgacctgtcCCTGAGCCTACCttccgtcctgtacctttgctctacCTATCTGtatattgacccctgcctgcccttgacctgtctctTGCCTGCCTCTGTTGGATTAATACACTGTTGTTACTTCAACGTTGTCTGCGTCTGGGCCTTACCTGAAATGTGTTAGTACAAACTGGCCACAACTGACCCAGCAAACTCGGGCCAGCTTCTCAACGCCATCTTCTCCCA
>TU2014041
ATGTAACACTCAGATTTTATTAAACACTGGAGAAGTTGCTGTGTATAATCGTTTTCGTTCACCCAACTTGGTTTTACTCACCTTGAACAATGATGGTGGTAACATCCACAGAGATGTTGCCAAAGGTAATGTTTGGATTGGCAACTGCTTCTTTCAGTGTATCCCTAATGTCAGTAACCTCAGGGACAGATTGAGTGGAGGTCTCGTTGAACACCAGTTGGACCTCCGCCTGTGTTTCTGCATCCATACGGGAATGGAAAATAGGTCTGCAAAAGGTCATAAAAGGTTATGAACAGTGGCATGCCAAAGGTTaaaagaatagaatagaacagaatggaatatTACGTGAATCCAAGAACAATCGTCCGGATGAAAAGGATCCCATATTTTGCTTTGTAGATCACATCGAACTGTAAGGAATGGTACAAACAGGAGAACATTTGAATGATTTagcacacacaaaaacatttctATATATTCCAATCCACATAGCTAAGCCCTAGTTATTAAAGATAGA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2014040 False 1321 lncRNA 0.41 3 60042706 60101430
TU2014041 True 517 lncRNA 0.39 2 60043797 60108086

Neighbor

gene id symbol gene type direction distance location
LOC100329196 LOC100329196 coding downstream 97631 59941937 ~ 59945075 (-)
LOC110500790 LOC106608490 coding downstream 100871 59918360 ~ 59941835 (-)
stl1 stl1 coding downstream 137081 59896373 ~ 59905625 (-)
mfsd8 mfsd8 coding downstream 162159 59864711 ~ 59880547 (-)
LOC110500793 LOC106608484 coding downstream 285787 59747504 ~ 59756919 (-)
trnay-gua-290 NA coding upstream 31005 60139091 ~ 60139177 (-)
trnay-gua-291 NA coding upstream 32344 60140430 ~ 60140516 (-)
trnay-gua-292 NA coding upstream 33008 60141094 ~ 60150736 (-)
trnay-gua-293 NA coding upstream 33672 60141758 ~ 60141844 (-)
trnay-gua-294 NA coding upstream 34348 60142434 ~ 60142520 (-)
G1758844 NA non-coding downstream 8821 60019022 ~ 60033885 (-)
G1758652 NA non-coding downstream 47087 59995363 ~ 59995619 (-)
G1758646 NA non-coding downstream 51537 59990955 ~ 59991169 (-)
G1758632 NA non-coding downstream 60112 59982366 ~ 59982594 (-)
G1758631 NA non-coding downstream 69838 59971587 ~ 59972868 (-)
G1758894 NA non-coding upstream 20761 60128847 ~ 60132714 (-)
trnay-gua-295 NA non-coding upstream 31499 60139585 ~ 60143212 (-)
G1758900 NA non-coding upstream 34731 60142817 ~ 60149889 (-)
G1758922 NA non-coding upstream 90626 60198712 ~ 60199064 (-)
G1758845 NA other downstream 17803 60023767 ~ 60024903 (-)
G1758095 NA other downstream 847216 59192432 ~ 59195490 (-)
G1757692 NA other downstream 1236881 58800174 ~ 58805825 (-)
G1757130 NA other downstream 1999649 58042650 ~ 58043057 (-)
G1757074 NA other downstream 2133572 57908139 ~ 57909134 (-)
G1758890 NA other upstream 14456 60122542 ~ 60123364 (-)
G1758915 NA other upstream 80324 60188410 ~ 60225587 (-)
LOC118942962 LOC106608456 other upstream 250744 60352810 ~ 60370197 (-)
G1759103 NA other upstream 420301 60528387 ~ 60528790 (-)
G1759186 NA other upstream 543874 60651960 ~ 60652756 (-)

Expression


Co-expression Network