G1758894


Basic Information

Item Value
gene id G1758894
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 60128847 ~ 60132714 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2014097
tcagcttttatttatttcatcacattcccagtgggtcagaagtttacatacacagaaTTAGAATTCGGTAgttttgcctttaaattgtttaacttgaccttttgttccaggtttcctccggaGAGACACGAAAGTACCAAGGGACTGAGCCTCTCTATCCATTCTTCATTAATGAATGTGCGTACTATGAGAAGGGCATAGCTCTCTCCCTGGCAAGACAGAGAAGTGTGGGGATACCGTCCATCTGGTTGGAGAGTGAAATAGAATAAGGGAAAGTGGAAAAAGTGCGCCAGAAGAAAGAGGAAGAaattgaggaggaagaggagatggacGAAGGCTATCAGAAGCTAATGGAATATGGAGAGGAGAGTGACTGACTAAACGGACAATACAAATCAGAGCTAATTTCAAGTTCTTGATATGAACAGTAGATTCAAAACACACCTCAGGAATAAGGTCAAGTGAGACACATTGTTCAACTGTTATGAACTTAAAAAGTGTAAAAATTAAATCCTTTACTGAAACGACAGCATTTGCTGATAACCgcttcaatacacacacacacacacacacactaacttagTATGACATCATCAGCTCACAATTCAACATTTTCCACACTTGCTCGCTACTCCAGGATATCTCTTgggagataaaaaaaatacattcacaATAGATTTACTGAAGCACATACACACCATGTCATTTGCCATATGAACTACATTTGAGGCAGGGATTGATATGCATTTGCCAGGCAGAAAACATGGTTAGAACCATTTGTTTtaaatattgaaaaaaaaaagaagaagaatcgACATCATTTTGAAAAAAGCTTGACTCATCAGCTACTTTTAAGTCCACATTCTTTCATAAATCTTACCTTTCATAACGCATACGTTTTCATGAAACATTGACTGCTGTCATATCATGTATATGAATACATGCAGACCTTACGACGTTTACCAGACGTTTACAACTACTCTATTCTTCTCGACGGTCAAGGGTTGATCAGGGTATTTGTCAGACATTAATATTCACTTGCGAACAGTTAAATTGTACATTGTAGACTAAATACAGATTAAATACCAAGGCCTACGAATAATTCATTAAATACATTCTTGACATAATAAATTAGTATTAACAGTTCACAGTTTAACCTTCGCGTTTCTTTGAGATTATAAATACAAAACCTATGCCATTAGAAGTGGCATTTGTAGGTGATGTAAAAATGAATAAATTAAGTAAAACCAACAAAACATAAATAACAAAAACAAGTAACACTATGTAAAAATGCAACATGAATCAAAGTAACCACATCTAGTCAATAGTGAGCAATAGTCTACAACGGAATGTAACGTCATGTGTACAAACCAGAACCTTCGTAACAAAGTGACATTGTCCACTATTAACCTAGCTGTAAGGTGGGGGGGTAATACATTCCTACGAAGTTCTGCAGAATCTTACAAATCCATCAAAATAATACTCCCGATAAAAAgactaaacaaaaaaacaaaatcaaCAAATGACTTACAAAATATCCAAACACAACCACTACAAACAATATGTAACTTTCTATAGATTGTCACTCAAAAGGAAATATTCGTAGTTTATATTTTTCCATTTGTCCTGGCTATGTCCAGGTTCTTCTAAGGTCGAAATACAATttgaaatacagtaccagtcaaaagtttggacacacctactcattcaagggttatttatttatttattttactatttttctacattgtagaataatagtgaagacatcaaaactatgaaaataacacatatggaatcatgtagtaaccaacaaaaagTGTTGAAAacatatttgatattcttcaaagcagctaccctttgccttgatgacagctttgtacactcttggcgttctctcaaccagcatcgtgaggtagtcacctgggatgcatttcaattaacaggtgtgccataaAAGTTTATTTGAGGAATTTCTGTTCTTATTAATGTGTTTTAGgcaatcagttgtgacaaggtaggggtggtatacagaagacagccctatgtggtaagtccatattatgcaagaacggctcaaataagcaaagagaaacgacagtccatcattactttaagatatgaggGTCAGTAAATccgaaaaccatcaagcactatgatgaacctggctctcatgaggaccaccacaggaaaggaagacccagagttccctctgctgtggaggataagttcattagagttaccagcctcagaaattgcagcctaaataaatgctttacagagttcaagtaacagatacatctacacatcaactgttcagaggagaccatgTGGATCAAgctttcatggttgaattgctgcaaagaaaccactactaaaggacaccaataataataagagacttgcttgggccaagaaacaccagcaatggacattagaccggtggaaatctgtcctttggtctgatgagtccaaatgttttTGGTTCCAagcgccgtgtctttgtgagacgcagagtaggtcaacggatgatctccacatgtgtggttcccaccgtgaagcatggaggaggaggtgtggtggtgctttgctggtgacactgtgattaatttagaattcaaggcacacttaaccagcatggctaccacagcattatgaagcgatacaccatcccatctggtttgagcttagtagGACTATAattcgtttttcaacaggacaatgacccaacacacctccaggctgtgtaagggctatttgaccaagaaggagcgtgatggagtgctgcgtcagatgacctggcctccacaatcacctgacctcaaaccaattgacatggtttgggatgagttggaccgcagagtgaaggaaaagcagccaacaactgctcagcatatgcgggacctccttcaagactgtttaaaaagcattccaggtgaagctggttgagagaatgccaagagtgtgcaaaggtgtcatcaaggcaaagggtggctacttttgagAATCtaaaattgaaaatatatttagatttgtttttaacacttttttggttactacatgattccatatgtgttatttgatagtacaatgtagaataagaaaaccctggaatgagtcggtgtgaccaaacttttgactggtcctgtaatCAAATGTTTGGACTAAAATCACCATAAACATATTTCTTTCAGAACGGTTTGATTTTCCAAACATGGGCCAATAATATCTCTTGCTAGTTAGTACATATGAAAGTCGAATGGAAGCATCTCTGACTGTGGCTGGTTACGGTTTGGAAAGTCTATTATAAACAATTATATGCTTGTTGGTCTAACCAATGGTACATTTTGTTCTGGGTCACACTGTTTCCCAATGTCAACTCCCTCACTCTTACACTAGGCACTTTAATAGATCTGAAATGATTGGATAAGCAACTGTGTGAAAAGCAATAGGGTGAAAATCCcagtagcctatcagagggcaaaGATTAGCATTTTCTATATTCTTATTCAGTTATTTCACGATCAACAAGTATCATGTGGTTGGAATTATGGTTTTGATTTGGAAATGTGCCTATATAAAAACAGATAGTCAGGCACCAGCAGGCCTGGTCTCTATGCTACCCTGTAGGCAGTCATGCGGTAGTAGTTCTGACTGTGGCTGCGTGCCGCCCACACCAGGAGAGCGGCAGCCATCATGTGCAGTGGGGATGAGATGAGGGCCAGGTAGAGCGACCAGCCCAGGGAGCCGTCCACCTTGTCTGGCAGCACAGAGACCCTGTGGAGGAGATCCATTCCTGCCAGGTAACAGCACACTGTGGCTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2014097 True 3823 lncRNA 0.39 3 60128847 60132714

Neighbor

gene id symbol gene type direction distance location
LOC100329196 LOC100329196 coding downstream 183772 59941937 ~ 59945075 (-)
LOC110500790 LOC106608490 coding downstream 187012 59918360 ~ 59941835 (-)
stl1 stl1 coding downstream 223222 59896373 ~ 59905625 (-)
mfsd8 mfsd8 coding downstream 248300 59864711 ~ 59880547 (-)
LOC110500793 LOC106608484 coding downstream 371928 59747504 ~ 59756919 (-)
trnay-gua-290 NA coding upstream 6377 60139091 ~ 60139177 (-)
trnay-gua-291 NA coding upstream 7716 60140430 ~ 60140516 (-)
trnay-gua-292 NA coding upstream 8380 60141094 ~ 60150736 (-)
trnay-gua-293 NA coding upstream 9044 60141758 ~ 60141844 (-)
trnay-gua-294 NA coding upstream 9720 60142434 ~ 60142520 (-)
G1758849 NA non-coding downstream 20761 60042706 ~ 60108086 (-)
G1758854 NA non-coding downstream 36292 60088282 ~ 60092555 (-)
G1758844 NA non-coding downstream 94962 60019022 ~ 60033885 (-)
G1758652 NA non-coding downstream 133228 59995363 ~ 59995619 (-)
G1758646 NA non-coding downstream 137678 59990955 ~ 59991169 (-)
trnay-gua-295 NA non-coding upstream 6871 60139585 ~ 60143212 (-)
G1758900 NA non-coding upstream 10103 60142817 ~ 60149889 (-)
G1758922 NA non-coding upstream 65998 60198712 ~ 60199064 (-)
G1758923 NA non-coding upstream 67347 60200061 ~ 60202158 (-)
G1758890 NA other downstream 5483 60122542 ~ 60123364 (-)
G1758845 NA other downstream 103944 60023767 ~ 60024903 (-)
G1758095 NA other downstream 933357 59192432 ~ 59195490 (-)
G1757692 NA other downstream 1323022 58800174 ~ 58805825 (-)
G1757130 NA other downstream 2085790 58042650 ~ 58043057 (-)
G1758915 NA other upstream 55696 60188410 ~ 60225587 (-)
LOC118942962 LOC106608456 other upstream 226116 60352810 ~ 60370197 (-)
G1759103 NA other upstream 395673 60528387 ~ 60528790 (-)
G1759186 NA other upstream 519246 60651960 ~ 60652756 (-)
G1759503 NA other upstream 791682 60924396 ~ 60938917 (-)

Expression


Co-expression Network