tmtc4 (tmtc4)


Basic Information

Item Value
gene id tmtc4
gene name tmtc4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 2899826 ~ 2950860 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958507.1
CTGTAGCTTGAGAACAGACTGATATGGAATAGGTGACGATGCAGCATGACCAAAGATCCTATGCACCATGGCACAGACTGAAATGAATTGGGACCAACAGATACCTTTACCAAAGCTTTCCCCATTCCATGCCAAGATCGCTGTGGCACTAGTGGCACTGCTCTGCTTCATCAATAGCTATGATGGAGACTTTGTGTTCGATGATTCTGAAGCCATTGTCAATAACAAGGACCTGATCCCATCCACGCCTCTCAACAACATCTGGAGAAATGACTTCTGGGGAAGTAACCTGAGCAGCAACAACAGCCACAAGTCCTACAGGCCGCTCACTGTCCTCACTTTTAGGCTTAACTACCTCATGGCTGGTGGGCTGCACCCAGTTGGCTTCCATGTGCTGAACATCGGCCTGCACAGTCTCATATCAGCGCTGATGATCGACATGTTCTCCGTACTGATCGGTGGCTTGGCATACGATGGGAATGGGAACAGGCTCAACCACGCACCCAAAGCTTCTCTCCTGGCTGGTCTTCTCTTTGCAGCGCACCCCGTTCACACCGAAAGCgtGGCAGGGATTGTAGGCCGGGCGGACCTACTTTGTGCACTGTTCTTCCAGCTCTCCTTTCTGACCTACTGCAAAGCCTTCAGAGGAGGTAGGGAGAGCGAGGAGAAGTTTTCCATCCATTGGATTGCCGTGAGCCTCTTGCTGTGCGCTGCGGCCATGCTCTGCAAAGAACAAGGCATCACAGTCCTGgggGTGAACGCTGCCTTTGATGTCCTTCTCATCTGTAATGTAAATGTCTACGAGCTGAGCCAGAGGCTGTTCCTCAGAAGGAAAGCAGAAGACGTGAGTGAGCGGGTGCGGACGGGCCTCCTGATCCGATTGGCTCTGCTGGCCATGGGCGGAGCCTCCCTGCTGTACGCCCGCTGGAGAATCATGGGAACTGGGCCCCCCGCCTTCACTGAAGTAGACAACCCAGCATCCTTTGCAGACAATGTCTTTCTCAGAATAGTCAACTATAATTACTACTACTCACTGAATGCCTGGGTGCTGCTGTGTCCCTGGTGGCTGTGTTTTGATTGGTCCATGGGCTGTGTGCCCCTCATTAAGTCAGCGTTTGATTGGAGGACGGcctggctgctgctgctctggTGCTTCCTGATAGGCTTGATAAGCCAAGCCTTATGCTCACAGGACAGCCagaggaggagGACGTTGACCCTGGGTCTGGTGCTGCTGGTAGTCCCCTTCCTGCCCGCCTGCAACATATTCTTCAGGGTTGGCTTCGTCATTGCAGAGAgggtcctctacctctcctccgcTGGCTACTGTCTGCTACTGGCCTACGCCCTGGGACACTGCTGCGGCCGCTGGAGCAGATGCAAGGGGCTGCTCCGTGCCTCCCTGCTGGCCCTGCTATGTGTGTATGTGGCTCGCTGTGCCCTGCGCAGTCACCAGTGGCGGTCCGAGCAGAGCCTCTTCACCAGCGCCCTGTCAGTCTGTCCACTCAATGCCAagGTGCATTATAATGTGGGTAAGAACCTAGCAGACAGAGGGAACACCAGTGCTGCCATCAAGTACTACAGAGAGGCAGTCAGGCTGCACCCTACGTATGTCCACGCTATGAACAACCTAGGCAACATCCTGAAAGAGAGGAACGAATTGGTGGAGGCAGAGGAGCTTCTGGCAAAAGCTGTACTCGTACAGCCGGACTTTGCAGCAGCGTGGATGAATCTGGGAATAGTGAAAAACAGtctgaagaagtttaaggaagcAGAGCAGAGCTACTGGAACGCCATCCAATTCCGGAAGAAATACCCTGACTGTTACTACAACCTGGGACGCCTGTATGCAGACCTGAACAGACACCTAGATGCTCTGAATGCGTGGAGGAATGCTACAGTGCTAAAGCCTGACCACAGCCTGGCATGGAACAACATGGTCATACTACTGGACAACACTgGCAACCTAGCCCAGGCGGAGGCAATTGGCCGAGAGGCCCTAAAGCTCCTCCCTAACGACCACACCATCATGTTCTCATTGGCCAACGTCCTGGGCAAACTACAGAAGTATAAGGAGTCCGAAGGCTTCTTCCTCCAGGCTCTGAGGATCAACCCAAATGCTGCCAGTTGCCATGGCAATCTGGCGGTGCTGTACCATCGCTGGGGGAAGCTGGAGCTGGCGAAGAAGCACTACGAGCTGTCTCTGAAGCTGGATCCAGAAGCCCCAGGCACCCGGGACAACTACAACATGCTGCGACGCAAACTGGACCAGCTTTACAGGACCACACCACCCTGAGGGACTCAACCACTGACTGCatgctgcaacacacacacatacgcaaatAACCATTCATTCATTCCAGCTTTGTACCGTTTCCATTCTATTTAAGAAATAGACTGTTTTGTGTAACATGTTCTGTTGCTTGTCCCCCATTATGGGAAGGGGACTAGAttggtctctgtctgttcgtACTTTAGTCACACGCGATGTCTGACAGCACTGGCCCGATTTTAAAtgaacttgggtgaatgatgcgtcTTCCCTTACTgggaaaaaaaaaactttttcacaTGCAAATTCGTTTTGTGGCAAATTTAAGGCGAATTGTGAACTTCTGGAAAACAATTATGGGGAAACTTGTGGCTAACATTCTACTGTTTGCAAATTTGTTTCAAACTGTATGAATATGcaaataaaatctgatttttggttactgtgtgttaacatTTAAATGTATCAATATAAACCAAATCACGTCATTTTAAATAAACTTGCTTCTCACAAAGAAAactaaactatactgaacaaaaattaacacaacatgtaaagtgttggtcccatgtgagctgaaataaaatatcccagaaatgtttgatacgcacaaaaa
>XM_036958506.1
TCTACGTGCGTGTCCCTACAATTCCTGTAGCTTGAGAACAGACTGATATGTGAGGATATTTCTATAATCGTAATATTGTACAAATAACAATAGTCAACCAATATCTTCATTTTCTACAAGGGAATAGGTGACGATGCAGCATGACCAAAGATCCTATGCACCATGGCACAGACTGAAATGAATTGGGACCAACAGATACCTTTACCAAAGCTTTCCCCATTCCATGCCAAGATCGCTGTGGCACTAGTGGCACTGCTCTGCTTCATCAATAGCTATGATGGAGACTTTGTGTTCGATGATTCTGAAGCCATTGTCAATAACAAGGACCTGATCCCATCCACGCCTCTCAACAACATCTGGAGAAATGACTTCTGGGGAAGTAACCTGAGCAGCAACAACAGCCACAAGTCCTACAGGCCGCTCACTGTCCTCACTTTTAGGCTTAACTACCTCATGGCTGGTGGGCTGCACCCAGTTGGCTTCCATGTGCTGAACATCGGCCTGCACAGTCTCATATCAGCGCTGATGATCGACATGTTCTCCGTACTGATCGGTGGCTTGGCATACGATGGGAATGGGAACAGGCTCAACCACGCACCCAAAGCTTCTCTCCTGGCTGGTCTTCTCTTTGCAGCGCACCCCGTTCACACCGAAAGCgtGGCAGGGATTGTAGGCCGGGCGGACCTACTTTGTGCACTGTTCTTCCAGCTCTCCTTTCTGACCTACTGCAAAGCCTTCAGAGGAGGTAGGGAGAGCGAGGAGAAGTTTTCCATCCATTGGATTGCCGTGAGCCTCTTGCTGTGCGCTGCGGCCATGCTCTGCAAAGAACAAGGCATCACAGTCCTGgggGTGAACGCTGCCTTTGATGTCCTTCTCATCTGTAATGTAAATGTCTACGAGCTGAGCCAGAGGCTGTTCCTCAGAAGGAAAGCAGAAGACGTGAGTGAGCGGGTGCGGACGGGCCTCCTGATCCGATTGGCTCTGCTGGCCATGGGCGGAGCCTCCCTGCTGTACGCCCGCTGGAGAATCATGGGAACTGGGCCCCCCGCCTTCACTGAAGTAGACAACCCAGCATCCTTTGCAGACAATGTCTTTCTCAGAATAGTCAACTATAATTACTACTACTCACTGAATGCCTGGGTGCTGCTGTGTCCCTGGTGGCTGTGTTTTGATTGGTCCATGGGCTGTGTGCCCCTCATTAAGTCAGCGTTTGATTGGAGGACGGcctggctgctgctgctctggTGCTTCCTGATAGGCTTGATAAGCCAAGCCTTATGCTCACAGGACAGCCagaggaggagGACGTTGACCCTGGGTCTGGTGCTGCTGGTAGTCCCCTTCCTGCCCGCCTGCAACATATTCTTCAGGGTTGGCTTCGTCATTGCAGAGAgggtcctctacctctcctccgcTGGCTACTGTCTGCTACTGGCCTACGCCCTGGGACACTGCTGCGGCCGCTGGAGCAGATGCAAGGGGCTGCTCCGTGCCTCCCTGCTGGCCCTGCTATGTGTGTATGTGGCTCGCTGTGCCCTGCGCAGTCACCAGTGGCGGTCCGAGCAGAGCCTCTTCACCAGCGCCCTGTCAGTCTGTCCACTCAATGCCAagGTGCATTATAATGTGGGTAAGAACCTAGCAGACAGAGGGAACACCAGTGCTGCCATCAAGTACTACAGAGAGGCAGTCAGGCTGCACCCTACGTATGTCCACGCTATGAACAACCTAGGCAACATCCTGAAAGAGAGGAACGAATTGGTGGAGGCAGAGGAGCTTCTGGCAAAAGCTGTACTCGTACAGCCGGACTTTGCAGCAGCGTGGATGAATCTGGGAATAGTGAAAAACAGtctgaagaagtttaaggaagcAGAGCAGAGCTACTGGAACGCCATCCAATTCCGGAAGAAATACCCTGACTGTTACTACAACCTGGGACGCCTGTATGCAGACCTGAACAGACACCTAGATGCTCTGAATGCGTGGAGGAATGCTACAGTGCTAAAGCCTGACCACAGCCTGGCATGGAACAACATGGTCATACTACTGGACAACACTgGCAACCTAGCCCAGGCGGAGGCAATTGGCCGAGAGGCCCTAAAGCTCCTCCCTAACGACCACACCATCATGTTCTCATTGGCCAACGTCCTGGGCAAACTACAGAAGTATAAGGAGTCCGAAGGCTTCTTCCTCCAGGCTCTGAGGATCAACCCAAATGCTGCCAGTTGCCATGGCAATCTGGCGGTGCTGTACCATCGCTGGGGGAAGCTGGAGCTGGCGAAGAAGCACTACGAGCTGTCTCTGAAGCTGGATCCAGAAGCCCCAGGCACCCGGGACAACTACAACATGCTGCGACGCAAACTGGACCAGCTTTACAGGACCACACCACCCTGAGGGACTCAACCACTGACTGCatgctgcaacacacacacatacgcaaatAACCATTCATTCATTCCAGCTTTGTACCGTTTCCATTCTATTTAAGAAATAGACTGTTTTGTGTAACATGTTCTGTTGCTTGTCCCCCATTATGGGAAGGGGACTAGAttggtctctgtctgttcgtACTTTAGTCACACGCGATGTCTGACAGCACTGGCCCGATTTTAAAtgaacttgggtgaatgatgcgtcTTCCCTTACTgggaaaaaaaaaactttttcacaTGCAAATTCGTTTTGTGGCAAATTTAAGGCGAATTGTGAACTTCTGGAAAACAATTATGGGGAAACTTGTGGCTAACATTCTACTGTTTGCAAATTTGTTTCAAACTGTATGAATATGcaaataaaatctgatttttggttactgtgtgttaacatTTAAATGTATCAATATAAACCAAATCACGTCATTTTAAATAAACTTGCTTCTCACAAAGAAAactaaactatactgaacaaaaattaacacaacatgtaaagtgttggtcccatgtgagctgaaataaaatatcccagaaatgtttgatacgcacaaaaa
>XM_036958505.1
CGTCACCATCCAAACTAATTCCACGCGCCAGCCAACGAGGAAGTACCAGGCATGCATACAGTCGCGAGTTGTGTATttactagagacagacagacagtgttgacATATTGTTAGCGTTATACGTGACGGTCAACCTGCATTTCTCGCCGCCTTTTGAGTGTTTTCTTTCGGTGCATATGCAGACGTAGGAGTCACATTAGTTGCCGCTAGCCGGCTAACAGcatcagctaacgttagctggctaataGTTAGCGAGCAGTATTTCACTTGGCAACCTTTGCAATAATTGTAGTTTGCCTGAAGGCTATATGATTGGCTTTATTATCAGTTACTCTGATTATGCTTGAAACTAAATTACTTTAGTAAGATTAGCCAGCCAGCTTTAGCTAACTATCAAGCCGCTGCAATGGAACTCATGCTTACGTGCGCGTCCTCCAAAACGCCTTCCAATATAATGAGGGAATAGGTGACGATGCAGCATGACCAAAGATCCTATGCACCATGGCACAGACTGAAATGAATTGGGACCAACAGATACCTTTACCAAAGCTTTCCCCATTCCATGCCAAGATCGCTGTGGCACTAGTGGCACTGCTCTGCTTCATCAATAGCTATGATGGAGACTTTGTGTTCGATGATTCTGAAGCCATTGTCAATAACAAGGACCTGATCCCATCCACGCCTCTCAACAACATCTGGAGAAATGACTTCTGGGGAAGTAACCTGAGCAGCAACAACAGCCACAAGTCCTACAGGCCGCTCACTGTCCTCACTTTTAGGCTTAACTACCTCATGGCTGGTGGGCTGCACCCAGTTGGCTTCCATGTGCTGAACATCGGCCTGCACAGTCTCATATCAGCGCTGATGATCGACATGTTCTCCGTACTGATCGGTGGCTTGGCATACGATGGGAATGGGAACAGGCTCAACCACGCACCCAAAGCTTCTCTCCTGGCTGGTCTTCTCTTTGCAGCGCACCCCGTTCACACCGAAAGCgtGGCAGGGATTGTAGGCCGGGCGGACCTACTTTGTGCACTGTTCTTCCAGCTCTCCTTTCTGACCTACTGCAAAGCCTTCAGAGGAGGTAGGGAGAGCGAGGAGAAGTTTTCCATCCATTGGATTGCCGTGAGCCTCTTGCTGTGCGCTGCGGCCATGCTCTGCAAAGAACAAGGCATCACAGTCCTGgggGTGAACGCTGCCTTTGATGTCCTTCTCATCTGTAATGTAAATGTCTACGAGCTGAGCCAGAGGCTGTTCCTCAGAAGGAAAGCAGAAGACGTGAGTGAGCGGGTGCGGACGGGCCTCCTGATCCGATTGGCTCTGCTGGCCATGGGCGGAGCCTCCCTGCTGTACGCCCGCTGGAGAATCATGGGAACTGGGCCCCCCGCCTTCACTGAAGTAGACAACCCAGCATCCTTTGCAGACAATGTCTTTCTCAGAATAGTCAACTATAATTACTACTACTCACTGAATGCCTGGGTGCTGCTGTGTCCCTGGTGGCTGTGTTTTGATTGGTCCATGGGCTGTGTGCCCCTCATTAAGTCAGCGTTTGATTGGAGGACGGcctggctgctgctgctctggTGCTTCCTGATAGGCTTGATAAGCCAAGCCTTATGCTCACAGGACAGCCagaggaggagGACGTTGACCCTGGGTCTGGTGCTGCTGGTAGTCCCCTTCCTGCCCGCCTGCAACATATTCTTCAGGGTTGGCTTCGTCATTGCAGAGAgggtcctctacctctcctccgcTGGCTACTGTCTGCTACTGGCCTACGCCCTGGGACACTGCTGCGGCCGCTGGAGCAGATGCAAGGGGCTGCTCCGTGCCTCCCTGCTGGCCCTGCTATGTGTGTATGTGGCTCGCTGTGCCCTGCGCAGTCACCAGTGGCGGTCCGAGCAGAGCCTCTTCACCAGCGCCCTGTCAGTCTGTCCACTCAATGCCAagGTGCATTATAATGTGGGTAAGAACCTAGCAGACAGAGGGAACACCAGTGCTGCCATCAAGTACTACAGAGAGGCAGTCAGGCTGCACCCTACGTATGTCCACGCTATGAACAACCTAGGCAACATCCTGAAAGAGAGGAACGAATTGGTGGAGGCAGAGGAGCTTCTGGCAAAAGCTGTACTCGTACAGCCGGACTTTGCAGCAGCGTGGATGAATCTGGGAATAGTGAAAAACAGtctgaagaagtttaaggaagcAGAGCAGAGCTACTGGAACGCCATCCAATTCCGGAAGAAATACCCTGACTGTTACTACAACCTGGGACGCCTGTATGCAGACCTGAACAGACACCTAGATGCTCTGAATGCGTGGAGGAATGCTACAGTGCTAAAGCCTGACCACAGCCTGGCATGGAACAACATGGTCATACTACTGGACAACACTgGCAACCTAGCCCAGGCGGAGGCAATTGGCCGAGAGGCCCTAAAGCTCCTCCCTAACGACCACACCATCATGTTCTCATTGGCCAACGTCCTGGGCAAACTACAGAAGTATAAGGAGTCCGAAGGCTTCTTCCTCCAGGCTCTGAGGATCAACCCAAATGCTGCCAGTTGCCATGGCAATCTGGCGGTGCTGTACCATCGCTGGGGGAAGCTGGAGCTGGCGAAGAAGCACTACGAGCTGTCTCTGAAGCTGGATCCAGAAGCCCCAGGCACCCGGGACAACTACAACATGCTGCGACGCAAACTGGACCAGCTTTACAGGACCACACCACCCTGAGGGACTCAACCACTGACTGCatgctgcaacacacacacatacgcaaatAACCATTCATTCATTCCAGCTTTGTACCGTTTCCATTCTATTTAAGAAATAGACTGTTTTGTGTAACATGTTCTGTTGCTTGTCCCCCATTATGGGAAGGGGACTAGAttggtctctgtctgttcgtACTTTAGTCACACGCGATGTCTGACAGCACTGGCCCGATTTTAAAtgaacttgggtgaatgatgcgtcTTCCCTTACTgggaaaaaaaaaactttttcacaTGCAAATTCGTTTTGTGGCAAATTTAAGGCGAATTGTGAACTTCTGGAAAACAATTATGGGGAAACTTGTGGCTAACATTCTACTGTTTGCAAATTTGTTTCAAACTGTATGAATATGcaaataaaatctgatttttggttactgtgtgttaacatTTAAATGTATCAATATAAACCAAATCACGTCATTTTAAATAAACTTGCTTCTCACAAAGAAAactaaactatactgaacaaaaattaacacaacatgtaaagtgttggtcccatgtgagctgaaataaaatatcccagaaatgtttgatacgcacaaaaa

Function

symbol description
tmtc4 Predicted to enable dolichyl-phosphate-mannose-protein mannosyltransferase activity. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Is expressed in central nervous system; neural plate; and retinal ganglion cell layer. Orthologous to human TMTC4 (transmembrane O-mannosyltransferase targeting cadherins 4).

NR:

description
transmembrane and TPR repeat-containing protein 4

GO: NA

KEGG:

id description
K23424 TMTC; protein O-mannosyl-transferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958507.1 False 2888 mRNA 0.50 18 2899826 2950367
XM_036958506.1 False 2983 mRNA 0.50 18 2899826 2950391
XM_036958505.1 True 3322 mRNA 0.50 18 2899826 2950860

Neighbor

gene id symbol gene type direction distance location
zic5 zic5 coding downstream 410766 2484121 ~ 2489060 (-)
LOC110501251 NA coding downstream 432894 2442459 ~ 2466932 (-)
gpr183a ebi2 coding downstream 857056 2016068 ~ 2042770 (-)
gpr18 gpr18 coding downstream 886764 2007954 ~ 2013062 (-)
LOC118943628 NA coding downstream 1367852 1525947 ~ 1531974 (-)
nalcn nalcn coding upstream 65990 3016850 ~ 3312040 (-)
LOC118943626 NA coding upstream 237237 3188097 ~ 3190294 (-)
fgf14 fgf14 coding upstream 500515 3447431 ~ 3774567 (-)
shox shox coding upstream 1331118 4281978 ~ 4294159 (-)
si:ch211-269e2.1 LOC106581653 coding upstream 1611363 4562223 ~ 4609211 (-)
G1765841 NA non-coding downstream 24709 2874740 ~ 2875117 (-)
G1765834 NA non-coding downstream 41084 2858491 ~ 2858742 (-)
G1765833 NA non-coding downstream 43728 2855898 ~ 2856098 (-)
G1765830 NA non-coding downstream 50564 2848932 ~ 2849262 (-)
G1765815 NA non-coding downstream 70711 2828914 ~ 2829115 (-)
G1765910 NA non-coding upstream 60099 3010959 ~ 3012075 (-)
G1765911 NA non-coding upstream 61731 3012591 ~ 3014779 (-)
G1766061 NA non-coding upstream 296575 3247435 ~ 3248152 (-)
G1766114 NA non-coding upstream 367325 3318185 ~ 3318399 (-)
G1766446 itgbl1 non-coding upstream 380713 3331573 ~ 3353785 (-)
klf5b LOC106586047 other downstream 1472106 1420358 ~ 1428026 (-)
G1763459 NA other downstream 1680109 1218802 ~ 1219717 (-)
G1762219 LOC106593246 other downstream 2794469 86357 ~ 105357 (-)
G1766126 NA other upstream 374861 3325721 ~ 3326343 (-)
G1769281 NA other upstream 2849901 5800761 ~ 5825307 (-)
G1769618 NA other upstream 3009290 5960150 ~ 5960815 (-)
G1771092 NA other upstream 4300924 7251784 ~ 7256717 (-)

Expression


Co-expression Network