LOC110502106


Basic Information

Item Value
gene id LOC110502106
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 6003661 ~ 6014297 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470291.2
gtaaccgaaaagttgcaagattgaatccctgagctgacaagAAAAAGATTGCCTGGGACAAGCATTAAGGGTCCCAAACATGCTGGCAGCTGGATGGTTCTTTTGTGACCGAGACAAAGTCGACTGCTTTGTAGGAGGAGCATCAGACACACCAACTGAGGAGTGCCCGGGATTTCAAGCAGGGAATGTGCTGTGATCCAAACCCAAAACCCAAAAACTGGACATACAGTAACTGGTGTGTTTGGGATGGCGTGCAGGCACGAGCATCTACTGAAGTTCCTGAacctgaagagaggagagaaCCTGGAGATAAGGTTGAAGGCCACGGAGAAGAGAAACTGGATTGTACACTACACTGCGCAGCAATTTTGGAAAGTCTGCAAACTAAGAAGACTCACTGTCTGCTGGCCACAATCCATAGGCTTGTCCTGGAGTGCTCTTTCTATTGTGGCCTGGTCAGAAAGTATGCGGGTACTGAAGCCAATTCAGTGTTGAACACTGCATCACGCCCTGGCATATCACTGCTGTTGTTAACTCATTCACCCAGATGCTTTGAACTATATGAAAGAATTCTATCAAACTTCAAGATTTTCATTAGCATTTCTTAAAATAGTTTTTCAGATGGACAAACCATTGCTGTGCGGCTCTCCAGAAATATCAAGCAGACATCAGAGAATAAAACAGCAGATCAACGCCTACAATGGAAGGAACAAGTCACCTCAATTCCCCCCAATACTTGGGCAAAGTGTGGCCGAGCCAACATGCTTTCACCTGGGTGCCCTCTGTGCTGTCCGAAATGAAATGCAGAACATATTAAAGCTCCAGCAAGCATTTTCAATGTTGGCTGGTGATGGCCCAGTCAgcacagatgaagaggaggacagtGATTCAGAAACTGAAAGTGGTTGAGGAatgaatgtttgtgtgtgcgtgtgagttctATAGGGACAAACTATACACAGAGTATTCCAcaaattaggaacaccttcctaatattgagttgcaccccccctccaccttttgccctca
>TU2026775
GATAGAGATTAAGAGTGATTCAGCCGGTCCTTgtaccatggcatcagagccagaccgaggctcctgtaGTGGAGGATTGGGTGAGCTGGAACCTGCCACCCTGATCCGCTACAGACTCTGGCCTGCCACCCCCCATCTGCCACAAACAGCAATTTCAGTGGTCCTCCTGCGCCAGTTTTGAGCCCTGCAGCTGGAGCGTGGGGTGTCTTTGAGGGGAATTACCTTGGTTTTTCACAAATCCAATGCATGTTGGAAGGTTGTTATTGTATTTTAAATTGGAAATAAGAAAAAACATGTATGTGTTTTTTACTGTGAGGAGTAGTTTTATTTTCATTCTATCTACAGACAGTTGAGTTCTACCGGAAGCTCAGAAATTAGTCATTTGAGGAGTTCAAACACTGGCAGTTTGAACGAGAGACTGTCAGGAAGATGGCGATACTGACCTTGGACGGAACAAAGTGTCCTCTCTGTCCACAGcaggtagcctagtggttagagtgttggactagtaaccgaaaagttgcaagattgaatccctgagctgacaagAAAAAGATTGCCTGGGACAAGCATTAAGGGTCCCAAACATGCTGGCAGCTGGATGGTTCTTTTGTGACCGAGACAAAGTCGACTGCTTTGTAGGAGGAGCATCAGACACACCAACTGAGGAGTGCCCGGGATTTCAAGCAGGGAATGTGCTGTGATCCAAACCCAAAACCCAAAAACTGGACATACAGTAACTGGTGTGTTTGGGATGGCGTGCAGGCACGAGCATCTACTGAAGTTCCTGAacctgaagagaggagagaagacctgagccctaggaccatgcctcaggactacctggcatgatgactccttgctgtccccagtccacctggccgtgctgctgctccagtgctgcttctgcctgcggctatggaaccctgaactgttcaccggacgtgctacctgtcccaggcctgctgttttcaactctctagagacagcaggagcggtagagatactctcaatgatcggctatgaaaagccaactgacatttactccggaggtgctgacatgttgcaccctctacaaccactgtgattattattatttgaccctgaaggtcatctatgaacacagccagaagagcacagccagaagaggactggccacccctcatagcctggttcctctctatgtttcttcctaggtttaggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgatatatccgctgatgtaagaagggctatataaatacatttgatttgatcttagtTTTTTGTGGAGGGACAGCTTGACTGGGCCAGTTTTCTTTCATTCCCTAACCAATTCTAGAGGAAACAATAGCAAGAAAACACAATGGTAAAGACTACTGCATCACATTTTCATGTCAGAGTTATTCAGCTTTTTATCTAGCAGATGATTGAAAAAGTATCCCTTATATACTAAGAGTTATCTTTATTGTTTCACAACCAGAGGGACAGTGATGGATGTTTTGAATCTGGGTTTTACCAGGCAATATGAAACTAGAAGCAAAATACAAATAGCTACCCGGAAAAGTTAAAATAACATAACAATCAACATTATTATCACAACAGCAGAGGACAGGATCCAGGATTTGCATGTTATGTTTTCAGAATTTGATGTCATAACCCTCTGATAGCTAGCCaaggggaagaggtagggagggagtgcATTGGGACCAGGTGAGGGAATCCAATAGCCCGACAACAATGGATGAATGAATACTTAATTGTTCCAAGGTGGCATTTGTTTGGGAATAATGGCACACATGTAACAAATCACAGAACATTCAACACTTCACTTAAATACAACATAAATATCACAGGACATACTTCACAAGACAAGGTCAGACAGACAAATTAGATAGAGGTATACTGTAGGTGCTGAATTATGGTTTAGTCTTCCTGGATTGAGGAACCTAGTGCTGGTTAACATGAATGACTTGTGTGCCCCGTTTGTTCTACAGAGTGGGGATTTGAACCTTTGGCCTGGCAGCAACTGTTGGTACTGGTAGTATAGTGGGTGTCTTAGTAACATTTTCTGGATTTATGGATGGTTCTTGATTTGTAGAGTGATGTGATGCTTTGAGACTTGACCCTGCTGAACCGTACCACTCAAGGAAGCAGAAGGTTAAGATGCTTTCAATGAATGTCTAATATAAAAGGtgaatctttgtgggctatactcagccttgtctcaggatggtaagttggtggttgaagatatccctctagtggtgtgggggctgtgctttggcaaagtgggtggggttatatccttcctgtttggccctgtccgggggtgtcctcggagtgggccacagtgtctcctgacccctcctgtctcagcctccagtatttatgctgcagtagtttatgtgtcggggggctagggtcagtttgttatatctggagtacttctcctgtcctattcggtgtcctgtgtgaatctaagtgtgcgttctctaattctctccttctctctttctctctctcggaggacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctggctgtgctgctgctccagtttcaactgttctgccttattattattcgaccatgctgatcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccatcccacatatgctctctctaattctctctttctttctctctctcggaggacctgagccctaggaccatgccccaggaatacctgacatgatgactccttgctgtccccagtccacctgactgtgctgctgctccagtttcaactattctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttgaccatgttttgttataatctccacccggcacagccagaagaggactggccaccccacatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttcttcacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtacgaagggctatataaaataaatttgattgattgaaatttgaATCATCAGTAAGGCCGTAGGAAGATTCCTAAGTAGTCCTAAGCCAAATGTTTTGTCCAGAACCCAGGGAGATATTACAAAAAGACAAAACCCTTTCTTATGTTCACAGAATACAAAACGTTAATGACCCTCACCTCCACCACTCTCCGACAGTCCAGTTCAGGTGGCTGCCTCAGCCATCAAAGGCGACCCTCTCCTCGTTATTCCCTGGTCAAATAAGGCTTTCAGAATCTCTCTTTGTTCATGACAAATGTATGATCTTCTTTATCTTAAGAACAgaattatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggacgaatactttcgcaaggcactgtatatacagagaaaggagtcggcccgagaattgaaccctttggtacccccatagagactgccagaggtccagacaacaggccctccgatttgacacactgaactcggtctgcaaagtagttggtgaaccaggcgaggcagtcattagaaaaaccaatgctattgagtctgccgataag
>TU2026776
GATAGAGATTAAGAGTGATTCAGCCGGTCCTTgtaccatggcatcagagccagaccgaggctcctgtaGTGGAGGATTGGGTGAGCTGGAACCTGCCACCCTGATCCGCTACAGACTCTGGCCTGCCACCCCCCATCTGCCACAAACAGCAATTTCAGTGGTCCTCCTGCGCCAGTTTTGAGCCCTGCAGCTGGAGCGTGGGGTGTCTTTGAGGGGAATTACCTTGGTTTTTCACAAATCCAATGCATGTTGGAAGACAGTTGAGTTCTACCGGAAGCTCAGAAATTAGTCATTTGAGGAGTTCAAACACTGGCAGTTTGAACGAGAGACTGTCAGGAAGATGGCGATACTGACCTTGGACGGAACAAAGTGTCCTCTCTGTCCACAGcaggtagcctagtggttagagtgttggactagtaaccgaaaagttgcaagattgaatccctgagctgacaagAAAAAGATTGCCTGGGACAAGCATTAAGGGTCCCAAACATGCTGGCAGCTGGATGGTTCTTTTGTGACCGAGACAAAGTCGACTGCTTTGTAGGAGGAGCATCAGACACACCAACTGAGGAGTGCCCGGGATTTCAAGCAGGGAATGTGCTGTGATCCAAACCCAAAACCCAAAAACTGGACATACAGTAACTGGTGTGTTTGGGATGGCGTGCAGGCACGAGCATCTACTGAAGTTCCTGAacctgaagagaggagagaagacctgagccctaggaccatgcctcaggactacctggcatgatgactccttgctgtccccagtccacctggccgtgctgctgctccagtgctgcttctgcctgcggctatggaaccctgaactgttcaccggacgtgctacctgtcccaggcctgctgttttcaactctctagagacagcaggagcggtagagatactctcaatgatcggctatgaaaagccaactgacatttactccggaggtgctgacatgttgcaccctctacaaccactgtgattattattatttgaccctgaaggtcatctatgaacacagccagaagagcacagccagaagaggactggccacccctcatagcctggttcctctctatgtttcttcctaggtttaggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgatatatccgctgatgtaagaagggctatataaatacatttgatttgatcttagtTTTTTGTGGAGGGACAGCTTGACTGGGCCAGTTTTCTTTCATTCCCTAACCAATTCTAGAGGAAACAATAGCAAGAAAACACAATGGTAAAGACTACTGCATCACATTTTCATGTCAGAGTTATTCAGCTTTTTATCTAGCAGATGATTGAAAAAGTATCCCTTATATACTAAGAGTTATCTTTATTGTTTCACAACCAGAGGGACAGTGATGGATGTTTTGAATCTGGGTTTTACCAGGCAATATGAAACTAGAAGCAAAATACAAATAGCTACCCGGAAAAGTTAAAATAACATAACAATCAACATTATTATCACAACAGCAGAGGACAGGATCCAGGATTTGCATGTTATGTTTTCAGAATTTGATGTCATAACCCTCTGATAGCTAGCCaaggggaagaggtagggagggagtgcATTGGGACCAGGTGAGGGAATCCAATAGCCCGACAACAATGGATGAATGAATACTTAATTGTTCCAAGGTGGCATTTGTTTGGGAATAATGGCACACATGTAACAAATCACAGAACATTCAACACTTCACTTAAATACAACATAAATATCACAGGACATACTTCACAAGACAAGGTCAGACAGACAAATTAGATAGAGGTATACTGTAGGTGCTGAATTATGGTTTAGTCTTCCTGGATTGAGGAACCTAGTGCTGGTTAACATGAATGACTTGTGTGCCCCGTTTGTTCTACAGAGTGGGGATTTGAACCTTTGGCCTGGCAGCAACTGTTGGTACTGGTAGTATAGTGGGTGTCTTAGTAACATTTTCTGGATTTATGGATGGTTCTTGATTTGTAGAGTGATGTGATGCTTTGAGACTTGACCCTGCTGAACCGTACCACTCAAGGAAGCAGAAGGTTAAGATGCTTTCAATGAATGTCTAATATAAAAGttgaATCATCAGTAAGGCCGTAGGAAGATTCCTAAGTAGTCCTAAGCCAAATGTTTTGTCCAGAACCCAGGGAGATATTACAAAAAGACAAAACCCTTTCTTATGTTCACAGAATACAAAACGTTAATGACCCTCACCTCCACCACTCTCCGACAGTCCAGTTCAGGTGGCTGCCTCAGCCATCAAAGGCGACCCTCTCCTCGTTATTCCCTGGTCAAATAAGGCTTTCAGAATCTCTCTTTGTTCATGACAAATGTATGATCTTCTTTATCTTAAGAACAgaattatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggacgaatactttcgcaaggcactgtatatacagagaaaggagtcggcccgagaattgaaccctttggtacccccatagagactgccagaggtccagacaacaggccctccgatttgacacactgaactcggtctgcaaagtagttggtgaaccaggcgaggcagtcattagaaaaaccaatgctattgagtctgccgataag
>TU2026777
GATAGAGATTAAGAGTGATTCAGCCGGTCCTTgtaccatggcatcagagccagaccgaggctcctgtaGTGGAGGATTGGGTGAGCTGGAACCTGCCACCCTGATCCGCTACAGACTCTGGCCTGCCACCCCCCATCTGCCACAAACAGCAATTTCAGTGGTCCTCCTGCGCCAGTTTTGAGCCCTGCAGCTGGAGCGTGGGGTGTCTTTGAGGGGAATTACCTTGGTTTTTCACAAATCCAATGCATGTTGGAAGGTTGTTATTGTATTTTAAATTGGAAATAAGAAAAAACATGTATGTGTTTTTTACTGTGAGGAGTAGTTTTATTTTCATTCTATCTACAGACAGTTGAGTTCTACCGGAAGCTCAGAAATTAGTCATTTGAGGAGTTCAAACACTGGCAGTTTGAACGAGAGACTGTCAGGAAGATGGCGATACTGACCTTGGACGGAACAAAGTGTCCTCTCTGTCCACAGcaggtagcctagtggttagagtgttggactagtaaccgaaaagttgcaagattgaatccctgagctgacaagAAAAAGATTGCCTGGGACAAGCATTAAGGGTCCCAAACATGCTGGCAGCTGGATGGTTCTTTTGTGACCGAGACAAAGTCGACTGCTTTGTAGGAGGAGCATCAGACACACCAACTGAGGAGTGCCCGGGATTTCAAGCAGGGAATGTGCTGTGATCCAAACCCAAAACCCAAAAACTGGACATACAGTAACTGGTGTGTTTGGGATGGCGTGCAGGCACGAGCATCTACTGAAGTTCCTGAacctgaagagaggagagaagacctgagccctaggaccatgcctcaggactacctggcatgatgactccttgctgtccccagtccacctggccgtgctgctgctccagtgctgcttctgcctgcggctatggaaccctgaactgttcaccggacgtgctacctgtcccaggcctgctgttttcaactctctagagacagcaggagcggtagagatactctcaatgatcggctatgaaaagccaactgacatttactccggaggtgctgacatgttgcaccctctacaaccactgtgattattattatttgaccctgaaggtcatctatgaacacagccagaagagcacagccagaagaggactggccacccctcatagcctggttcctctctatgtttcttcctaggtttaggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgatatatccgctgatgtaagaagggctatataaatacatttgatttgatcttagtTTTTTGTGGAGGGACAGCTTGACTGGGCCAGTTTTCTTTCATTCCCTAACCAATTCTAGAGGAAACAATAGCAAGAAAACACAATGGTAAAGACTACTGCATCACATTTTCATGTCAGAGTTATTCAGCTTTTTATCTAGCAGATGATTGAAAAAGTATCCCTTATATACTAAGAGTTATCTTTATTGTTTCACAACCAGAGGGACAGTGATGGATGTTTTGAATCTGGGTTTTACCAGGCAATATGAAACTAGAAGCAAAATACAAATAGCTACCCGGAAAAGTTAAAATAACATAACAATCAACATTATTATCACAACAGCAGAGGACAGGATCCAGGATTTGCATGTTATGTTTTCAGAATTTGATGTCATAACCCTCTGATAGCTAGCCaaggggaagaggtagggagggagtgcATTGGGACCAGGTGAGGGAATCCAATAGCCCGACAACAATGGATGAATGAATACTTAATTGTTCCAAGGTGGCATTTGTTTGGGAATAATGGCACACATGTAACAAATCACAGAACATTCAACACTTCACTTAAATACAACATAAATATCACAGGACATACTTCACAAGACAAGGTCAGACAGACAAATTAGATAGAGGTATACTGTAGGTGCTGAATTATGGTTTAGTCTTCCTGGATTGAGGAACCTAGTGCTGGTTAACATGAATGACTTGTGTGCCCCGTTTGTTCTACAGAGTGGGGATTTGAACCTTTGGCCTGGCAGCAACTGTTGGTACTGGTAGTATAGTGGGTGTCTTAGTAACATTTTCTGGATTTATGGATGGTTCTTGATTTGTAGAGTGATGTGATGCTTTGAGACTTGACCCTGCTGAACCGTACCACTCAAGGAAGCAGAAGGTTAAGATGCTTTCAATGAATGTCTAATATAAAAGttgaATCATCAGTAAGGCCGTAGGAAGATTCCTAAGTAGTCCTAAGCCAAATGTTTTGTCCAGAACCCAGGGAGATATTACAAAAAGACAAAACCCTTTCTTATGTTCACAGAATACAAAACGTTAATGACCCTCACCTCCACCACTCTCCGACAGTCCAGTTCAGGTGGCTGCCTCAGCCATCAAAGGCGACCCTCTCCTCGTTATTCCCTGGTCAAATAAGGCTTTCAGAATCTCTCTTTGTTCATGACAAATGTATGATCTTCTTTATCTTAAGAACAgaattatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggacgaatactttcgcaaggcactgtatatacagagaaaggagtcggcccgagaattgaaccctttggtacccccatagagactgccagaggtccagacaacaggccctccgatttgacacactgaactcggtctgcaaagtagttggtgaaccaggcgaggcagtcattagaaaaaccaatgctattgagtctgccgataag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470291.2 False 1029 mRNA 0.46 4 6009831 6013646
TU2026775 False 3858 lncRNA 0.45 5 6003661 6014297
TU2026776 False 2787 lncRNA 0.45 7 6003661 6014297
TU2026777 True 2876 lncRNA 0.44 6 6003661 6014297

Neighbor

gene id symbol gene type direction distance location
trnas-cga-33 NA coding downstream 14184 5995566 ~ 5995647 (-)
nabp1a LOC106581684 coding downstream 14820 5970414 ~ 5995011 (-)
LOC110501285 LOC106581661 coding downstream 41286 5963937 ~ 5968545 (-)
LOC110501283 LOC106581680 coding downstream 109445 5805613 ~ 5900386 (-)
LOC110501282 LOC106581679 coding downstream 221163 5741280 ~ 5788668 (-)
LOC110501287 LOC106581685 coding upstream 5032 6018678 ~ 6042189 (-)
LOC110501288 LOC106581686 coding upstream 68734 6082380 ~ 6226566 (-)
LOC118943629 NA coding upstream 840440 6854086 ~ 6855433 (-)
slc39a10 slc39a10 coding upstream 1089931 7103577 ~ 7168382 (-)
LOC110501290 LOC106581993 coding upstream 1309951 7323597 ~ 7326019 (-)
G1769613 NA non-coding downstream 47535 5961640 ~ 5962296 (-)
G1769614 NA non-coding downstream 48384 5961028 ~ 5961447 (-)
G1769609 NA non-coding downstream 51016 5958597 ~ 5958815 (-)
G1769607 NA non-coding downstream 53061 5956528 ~ 5956770 (-)
G1769604 NA non-coding downstream 57692 5951923 ~ 5952139 (-)
G1769650 NA non-coding upstream 44288 6057934 ~ 6058153 (-)
G1769579 NA non-coding upstream 74714 6088360 ~ 6102892 (-)
G1769689 NA non-coding upstream 125014 6138660 ~ 6176150 (-)
G1769840 NA non-coding upstream 280644 6294290 ~ 6294596 (-)
G1769618 NA other downstream 49016 5960150 ~ 5960815 (-)
G1769281 NA other downstream 184524 5800761 ~ 5825307 (-)
fgf14 fgf14 other downstream 2235822 3447431 ~ 3774567 (-)
G1766126 NA other downstream 2683488 3325721 ~ 3326343 (-)
klf5b LOC106586047 other downstream 4582111 1420358 ~ 1428026 (-)
G1771092 NA other upstream 1238138 7251784 ~ 7256717 (-)
G1771426 LOC106582012 other upstream 1448567 7462213 ~ 7464692 (-)
LOC110501323 LOC106581977 other upstream 2611376 8624815 ~ 8684792 (-)
LOC110501325 LOC106581976 other upstream 2723533 8737175 ~ 8758540 (-)
LOC110502107 grk1 other upstream 2749646 8763292 ~ 8768047 (-)

Expression


Co-expression Network